Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1226 and GFF1227 are separated by 34 nucleotides GFF1227 and GFF1228 are separated by 146 nucleotides
GFF1226 - Heavy-chain fibroin (Fragment), at 545,917 to 547,248
GFF1226
GFF1227 - no description, at 547,283 to 547,840
GFF1227
GFF1228 - Fructose-bisphosphate aldolase class I (EC 4.1.2.13), at 547,987 to 549,051
GFF1228
Position (kb) 547
548 Strain fitness (log2 ratio) -2
-1
0
1
2 at 546.296 kb on + strand, within GFF1226 at 546.296 kb on + strand, within GFF1226 at 546.297 kb on - strand, within GFF1226 at 546.297 kb on - strand, within GFF1226 at 546.297 kb on - strand, within GFF1226 at 546.386 kb on + strand, within GFF1226 at 546.386 kb on + strand, within GFF1226 at 546.545 kb on + strand, within GFF1226 at 546.545 kb on + strand, within GFF1226 at 546.545 kb on + strand, within GFF1226 at 546.545 kb on + strand, within GFF1226 at 546.545 kb on + strand, within GFF1226 at 546.545 kb on + strand, within GFF1226 at 546.545 kb on + strand, within GFF1226 at 546.546 kb on - strand, within GFF1226 at 546.546 kb on - strand, within GFF1226 at 546.546 kb on - strand, within GFF1226 at 546.546 kb on - strand, within GFF1226 at 546.546 kb on - strand, within GFF1226 at 546.546 kb on - strand, within GFF1226 at 546.548 kb on + strand, within GFF1226 at 546.548 kb on + strand, within GFF1226 at 546.548 kb on + strand, within GFF1226 at 546.548 kb on + strand, within GFF1226 at 546.548 kb on + strand, within GFF1226 at 546.548 kb on + strand, within GFF1226 at 546.548 kb on + strand, within GFF1226 at 546.548 kb on + strand, within GFF1226 at 546.548 kb on + strand, within GFF1226 at 546.549 kb on - strand, within GFF1226 at 546.549 kb on - strand, within GFF1226 at 546.549 kb on - strand, within GFF1226 at 546.549 kb on - strand, within GFF1226 at 546.549 kb on - strand, within GFF1226 at 546.549 kb on - strand, within GFF1226 at 546.788 kb on + strand, within GFF1226 at 546.788 kb on + strand, within GFF1226 at 546.788 kb on + strand, within GFF1226 at 546.788 kb on + strand, within GFF1226 at 546.789 kb on - strand, within GFF1226 at 546.789 kb on - strand, within GFF1226 at 546.789 kb on - strand, within GFF1226 at 547.482 kb on + strand, within GFF1227 at 547.482 kb on + strand, within GFF1227 at 547.482 kb on + strand, within GFF1227 at 547.483 kb on - strand, within GFF1227 at 547.483 kb on - strand, within GFF1227 at 547.566 kb on + strand, within GFF1227 at 547.566 kb on + strand, within GFF1227 at 547.580 kb on - strand, within GFF1227 at 547.659 kb on - strand, within GFF1227 at 547.874 kb on + strand at 547.875 kb on - strand at 547.983 kb on + strand at 547.983 kb on + strand at 547.983 kb on + strand at 547.984 kb on - strand at 547.984 kb on - strand at 548.589 kb on - strand, within GFF1228 at 548.591 kb on + strand, within GFF1228 at 548.592 kb on - strand, within GFF1228 at 548.592 kb on - strand, within GFF1228
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 546,296 + GFF1226 0.28 -0.1 546,296 + GFF1226 0.28 +1.3 546,297 - GFF1226 0.29 -2.7 546,297 - GFF1226 0.29 -0.4 546,297 - GFF1226 0.29 -0.7 546,386 + GFF1226 0.35 -0.7 546,386 + GFF1226 0.35 +0.6 546,545 + GFF1226 0.47 +0.1 546,545 + GFF1226 0.47 -0.4 546,545 + GFF1226 0.47 -0.7 546,545 + GFF1226 0.47 -1.8 546,545 + GFF1226 0.47 +0.4 546,545 + GFF1226 0.47 -0.8 546,545 + GFF1226 0.47 -0.7 546,546 - GFF1226 0.47 +0.6 546,546 - GFF1226 0.47 +0.4 546,546 - GFF1226 0.47 -0.4 546,546 - GFF1226 0.47 +2.3 546,546 - GFF1226 0.47 -1.0 546,546 - GFF1226 0.47 -0.7 546,548 + GFF1226 0.47 +0.3 546,548 + GFF1226 0.47 +1.3 546,548 + GFF1226 0.47 -0.5 546,548 + GFF1226 0.47 -0.4 546,548 + GFF1226 0.47 -0.0 546,548 + GFF1226 0.47 +1.5 546,548 + GFF1226 0.47 -0.5 546,548 + GFF1226 0.47 +0.1 546,548 + GFF1226 0.47 -0.3 546,549 - GFF1226 0.47 -1.8 546,549 - GFF1226 0.47 -0.4 546,549 - GFF1226 0.47 +0.0 546,549 - GFF1226 0.47 -0.7 546,549 - GFF1226 0.47 +1.1 546,549 - GFF1226 0.47 -0.2 546,788 + GFF1226 0.65 +0.4 546,788 + GFF1226 0.65 +0.2 546,788 + GFF1226 0.65 +0.6 546,788 + GFF1226 0.65 -1.0 546,789 - GFF1226 0.65 +0.1 546,789 - GFF1226 0.65 -1.5 546,789 - GFF1226 0.65 -0.3 547,482 + GFF1227 0.36 -1.5 547,482 + GFF1227 0.36 -0.4 547,482 + GFF1227 0.36 +0.3 547,483 - GFF1227 0.36 +0.7 547,483 - GFF1227 0.36 +0.5 547,566 + GFF1227 0.51 +0.5 547,566 + GFF1227 0.51 -0.6 547,580 - GFF1227 0.53 +0.4 547,659 - GFF1227 0.67 -0.3 547,874 + -1.6 547,875 - +0.6 547,983 + -1.1 547,983 + -0.7 547,983 + -1.7 547,984 - -0.1 547,984 - -0.2 548,589 - GFF1228 0.57 -0.1 548,591 + GFF1228 0.57 -0.3 548,592 - GFF1228 0.57 -0.7 548,592 - GFF1228 0.57 -1.2
Or see this region's nucleotide sequence