Strain Fitness in Variovorax sp. SCN45 around GFF1121

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1119 and GFF1120 are separated by 65 nucleotidesGFF1120 and GFF1121 are separated by 22 nucleotidesGFF1121 and GFF1122 are separated by 4 nucleotidesGFF1122 and GFF1123 overlap by 4 nucleotides GFF1119 - Ribonuclease HI (EC 3.1.26.4), at 436,138 to 436,620 GFF1119 GFF1120 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 436,686 to 437,141 GFF1120 GFF1121 - Molybdopterin molybdenumtransferase (EC 2.10.1.1), at 437,164 to 438,474 GFF1121 GFF1122 - Molybdenum cofactor guanylyltransferase (EC 2.7.7.77), at 438,479 to 439,138 GFF1122 GFF1123 - GTP 3',8-cyclase (EC 4.1.99.22), at 439,135 to 440,292 GFF1123 Position (kb) 437 438 439Strain fitness (log2 ratio) -2 -1 0 1 2at 436.189 kb on + strand, within GFF1119at 436.189 kb on + strand, within GFF1119at 436.189 kb on + strand, within GFF1119at 436.189 kb on + strand, within GFF1119at 436.190 kb on - strand, within GFF1119at 436.190 kb on - strand, within GFF1119at 436.190 kb on - strand, within GFF1119at 436.191 kb on + strand, within GFF1119at 436.369 kb on + strand, within GFF1119at 436.370 kb on - strand, within GFF1119at 436.370 kb on - strand, within GFF1119at 436.370 kb on - strand, within GFF1119at 436.370 kb on - strand, within GFF1119at 436.384 kb on + strand, within GFF1119at 436.385 kb on - strand, within GFF1119at 436.385 kb on - strand, within GFF1119at 436.412 kb on + strand, within GFF1119at 436.719 kb on + strandat 436.719 kb on + strandat 436.719 kb on + strandat 436.968 kb on + strand, within GFF1120at 436.968 kb on + strand, within GFF1120at 436.968 kb on + strand, within GFF1120at 436.968 kb on + strand, within GFF1120at 436.968 kb on + strand, within GFF1120at 436.968 kb on + strand, within GFF1120at 436.968 kb on + strand, within GFF1120at 436.969 kb on - strand, within GFF1120at 436.969 kb on - strand, within GFF1120at 437.139 kb on + strandat 437.165 kb on + strandat 437.165 kb on + strandat 437.165 kb on + strandat 437.349 kb on - strand, within GFF1121at 437.737 kb on + strand, within GFF1121at 437.737 kb on + strand, within GFF1121at 437.737 kb on + strand, within GFF1121at 437.737 kb on + strand, within GFF1121at 437.737 kb on + strand, within GFF1121at 437.738 kb on - strand, within GFF1121at 437.738 kb on - strand, within GFF1121at 437.796 kb on - strand, within GFF1121at 437.796 kb on - strand, within GFF1121at 437.810 kb on + strand, within GFF1121at 437.810 kb on + strand, within GFF1121at 437.811 kb on - strand, within GFF1121at 437.811 kb on - strand, within GFF1121at 437.870 kb on + strand, within GFF1121at 437.870 kb on + strand, within GFF1121at 437.870 kb on + strand, within GFF1121at 437.870 kb on + strand, within GFF1121at 437.871 kb on - strand, within GFF1121at 437.871 kb on - strand, within GFF1121at 437.871 kb on - strand, within GFF1121at 438.082 kb on + strand, within GFF1121at 438.082 kb on + strand, within GFF1121at 438.082 kb on + strand, within GFF1121at 438.083 kb on - strand, within GFF1121at 438.083 kb on - strand, within GFF1121at 438.255 kb on - strand, within GFF1121at 438.255 kb on - strand, within GFF1121at 438.435 kb on - strandat 438.564 kb on - strand, within GFF1122at 438.882 kb on + strand, within GFF1122at 438.883 kb on - strand, within GFF1122at 438.883 kb on - strand, within GFF1122at 438.927 kb on + strand, within GFF1122at 438.927 kb on + strand, within GFF1122at 438.927 kb on + strand, within GFF1122at 438.927 kb on + strand, within GFF1122at 438.927 kb on + strand, within GFF1122at 438.927 kb on + strand, within GFF1122at 438.927 kb on + strand, within GFF1122at 438.928 kb on - strand, within GFF1122at 438.928 kb on - strand, within GFF1122at 438.928 kb on - strand, within GFF1122at 438.928 kb on - strand, within GFF1122at 438.928 kb on - strand, within GFF1122at 438.928 kb on - strand, within GFF1122at 438.928 kb on - strand, within GFF1122at 438.989 kb on + strand, within GFF1122at 438.989 kb on + strand, within GFF1122at 438.989 kb on + strand, within GFF1122at 438.990 kb on - strand, within GFF1122at 438.990 kb on - strand, within GFF1122at 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.149 kb on - strandat 439.149 kb on - strandat 439.149 kb on - strandat 439.149 kb on - strandat 439.149 kb on - strandat 439.149 kb on - strandat 439.149 kb on - strandat 439.229 kb on + strandat 439.229 kb on + strandat 439.230 kb on - strandat 439.346 kb on + strand, within GFF1123at 439.346 kb on + strand, within GFF1123at 439.346 kb on + strand, within GFF1123at 439.347 kb on - strand, within GFF1123at 439.347 kb on - strand, within GFF1123at 439.347 kb on - strand, within GFF1123at 439.347 kb on - strand, within GFF1123at 439.445 kb on + strand, within GFF1123at 439.445 kb on + strand, within GFF1123at 439.445 kb on + strand, within GFF1123at 439.446 kb on - strand, within GFF1123at 439.446 kb on - strand, within GFF1123at 439.446 kb on - strand, within GFF1123at 439.446 kb on - strand, within GFF1123

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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436,189 + GFF1119 0.11 -1.0
436,189 + GFF1119 0.11 +2.2
436,189 + GFF1119 0.11 -1.4
436,189 + GFF1119 0.11 +0.2
436,190 - GFF1119 0.11 -0.8
436,190 - GFF1119 0.11 +0.1
436,190 - GFF1119 0.11 +0.2
436,191 + GFF1119 0.11 +0.5
436,369 + GFF1119 0.48 -1.3
436,370 - GFF1119 0.48 -1.6
436,370 - GFF1119 0.48 -1.2
436,370 - GFF1119 0.48 +1.3
436,370 - GFF1119 0.48 -0.8
436,384 + GFF1119 0.51 +0.0
436,385 - GFF1119 0.51 -0.2
436,385 - GFF1119 0.51 -1.2
436,412 + GFF1119 0.57 +0.8
436,719 + +0.3
436,719 + -1.2
436,719 + -0.4
436,968 + GFF1120 0.62 -0.6
436,968 + GFF1120 0.62 -0.2
436,968 + GFF1120 0.62 -0.4
436,968 + GFF1120 0.62 -0.1
436,968 + GFF1120 0.62 -2.4
436,968 + GFF1120 0.62 -1.2
436,968 + GFF1120 0.62 -1.2
436,969 - GFF1120 0.62 +1.3
436,969 - GFF1120 0.62 +1.1
437,139 + -0.3
437,165 + -0.4
437,165 + -1.0
437,165 + -0.4
437,349 - GFF1121 0.14 -0.2
437,737 + GFF1121 0.44 -1.2
437,737 + GFF1121 0.44 -0.9
437,737 + GFF1121 0.44 +0.0
437,737 + GFF1121 0.44 -1.5
437,737 + GFF1121 0.44 -0.8
437,738 - GFF1121 0.44 -0.8
437,738 - GFF1121 0.44 -0.6
437,796 - GFF1121 0.48 +0.1
437,796 - GFF1121 0.48 -2.4
437,810 + GFF1121 0.49 -0.2
437,810 + GFF1121 0.49 -0.0
437,811 - GFF1121 0.49 +0.6
437,811 - GFF1121 0.49 +0.2
437,870 + GFF1121 0.54 -0.8
437,870 + GFF1121 0.54 +0.2
437,870 + GFF1121 0.54 -0.7
437,870 + GFF1121 0.54 -2.1
437,871 - GFF1121 0.54 +0.2
437,871 - GFF1121 0.54 -0.4
437,871 - GFF1121 0.54 -1.3
438,082 + GFF1121 0.70 -0.4
438,082 + GFF1121 0.70 -0.6
438,082 + GFF1121 0.70 -0.7
438,083 - GFF1121 0.70 +0.2
438,083 - GFF1121 0.70 -0.4
438,255 - GFF1121 0.83 -0.7
438,255 - GFF1121 0.83 -0.3
438,435 - +0.1
438,564 - GFF1122 0.13 -1.0
438,882 + GFF1122 0.61 -0.7
438,883 - GFF1122 0.61 -0.1
438,883 - GFF1122 0.61 -0.3
438,927 + GFF1122 0.68 -1.0
438,927 + GFF1122 0.68 +0.1
438,927 + GFF1122 0.68 +0.8
438,927 + GFF1122 0.68 +0.6
438,927 + GFF1122 0.68 -0.0
438,927 + GFF1122 0.68 -0.0
438,927 + GFF1122 0.68 -0.0
438,928 - GFF1122 0.68 -0.2
438,928 - GFF1122 0.68 -0.7
438,928 - GFF1122 0.68 +0.3
438,928 - GFF1122 0.68 +0.1
438,928 - GFF1122 0.68 -0.7
438,928 - GFF1122 0.68 +0.4
438,928 - GFF1122 0.68 +0.2
438,989 + GFF1122 0.77 -2.0
438,989 + GFF1122 0.77 -0.1
438,989 + GFF1122 0.77 +0.1
438,990 - GFF1122 0.77 -0.4
438,990 - GFF1122 0.77 +0.1
439,148 + -1.4
439,148 + +0.3
439,148 + +0.7
439,148 + -0.7
439,148 + +0.3
439,148 + +0.2
439,148 + -0.1
439,148 + -1.1
439,148 + +0.3
439,148 + +0.4
439,148 + -0.8
439,148 + -0.2
439,148 + -1.0
439,148 + -0.0
439,148 + -0.3
439,148 + -0.6
439,148 + -1.6
439,149 - +1.6
439,149 - -1.4
439,149 - -0.4
439,149 - +0.3
439,149 - +1.0
439,149 - -0.2
439,149 - -0.1
439,229 + +1.3
439,229 + -1.0
439,230 - -0.3
439,346 + GFF1123 0.18 +1.6
439,346 + GFF1123 0.18 -0.3
439,346 + GFF1123 0.18 -1.0
439,347 - GFF1123 0.18 -1.5
439,347 - GFF1123 0.18 -0.1
439,347 - GFF1123 0.18 -1.7
439,347 - GFF1123 0.18 -0.1
439,445 + GFF1123 0.27 +0.3
439,445 + GFF1123 0.27 -0.3
439,445 + GFF1123 0.27 -0.8
439,446 - GFF1123 0.27 -0.5
439,446 - GFF1123 0.27 +0.0
439,446 - GFF1123 0.27 +0.0
439,446 - GFF1123 0.27 -0.2

Or see this region's nucleotide sequence