Strain Fitness in Variovorax sp. SCN45 around GFF7374

Experiment: M9 with Supernatant from Cyptococcus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF7373 and GFF7374 are separated by 16 nucleotidesGFF7374 and GFF7375 are separated by 4 nucleotides GFF7373 - CaiB/BaiF family protein, at 2,259 to 3,650 GFF7373 GFF7374 - FIG00984748: hypothetical protein, at 3,667 to 4,743 GFF7374 GFF7375 - Arginine:pyruvate transaminase, at 4,748 to 5,956 GFF7375 Position (kb) 3 4 5Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3.097 kb on + strand, within GFF7373at 3.097 kb on + strand, within GFF7373at 3.097 kb on + strand, within GFF7373at 3.097 kb on + strand, within GFF7373at 3.097 kb on + strand, within GFF7373at 3.097 kb on + strand, within GFF7373at 3.098 kb on - strand, within GFF7373at 3.098 kb on - strand, within GFF7373at 3.098 kb on - strand, within GFF7373at 3.098 kb on - strand, within GFF7373at 3.098 kb on - strand, within GFF7373at 3.098 kb on - strand, within GFF7373at 3.098 kb on - strand, within GFF7373at 3.098 kb on - strand, within GFF7373at 3.348 kb on + strand, within GFF7373at 3.348 kb on + strand, within GFF7373at 3.417 kb on - strand, within GFF7373at 3.508 kb on - strand, within GFF7373at 3.558 kb on - strandat 3.558 kb on - strandat 3.558 kb on - strandat 3.673 kb on + strandat 4.009 kb on + strand, within GFF7374at 4.111 kb on + strand, within GFF7374at 4.111 kb on + strand, within GFF7374at 4.111 kb on + strand, within GFF7374at 4.111 kb on + strand, within GFF7374at 4.111 kb on + strand, within GFF7374at 4.112 kb on - strand, within GFF7374at 4.112 kb on - strand, within GFF7374at 4.112 kb on - strand, within GFF7374at 4.114 kb on + strand, within GFF7374at 4.114 kb on + strand, within GFF7374at 4.114 kb on + strand, within GFF7374at 4.114 kb on + strand, within GFF7374at 4.114 kb on + strand, within GFF7374at 4.115 kb on - strand, within GFF7374at 4.115 kb on - strand, within GFF7374at 4.115 kb on - strand, within GFF7374at 4.115 kb on - strand, within GFF7374at 4.231 kb on + strand, within GFF7374at 4.231 kb on + strand, within GFF7374at 4.231 kb on + strand, within GFF7374at 4.345 kb on + strand, within GFF7374at 4.345 kb on + strand, within GFF7374at 4.345 kb on + strand, within GFF7374at 4.346 kb on - strand, within GFF7374at 4.346 kb on - strand, within GFF7374at 4.346 kb on - strand, within GFF7374at 4.346 kb on - strand, within GFF7374at 4.582 kb on + strand, within GFF7374at 4.582 kb on + strand, within GFF7374at 4.582 kb on + strand, within GFF7374at 4.582 kb on + strand, within GFF7374at 4.583 kb on - strand, within GFF7374at 4.583 kb on - strand, within GFF7374at 4.583 kb on - strand, within GFF7374at 4.583 kb on - strand, within GFF7374at 4.583 kb on - strand, within GFF7374at 4.583 kb on - strand, within GFF7374at 4.583 kb on - strand, within GFF7374at 4.583 kb on - strand, within GFF7374at 4.607 kb on - strand, within GFF7374at 4.615 kb on + strand, within GFF7374at 4.616 kb on - strand, within GFF7374at 4.830 kb on + strandat 4.831 kb on - strandat 4.831 kb on - strandat 5.034 kb on + strand, within GFF7375at 5.034 kb on + strand, within GFF7375at 5.034 kb on + strand, within GFF7375at 5.034 kb on + strand, within GFF7375at 5.035 kb on - strand, within GFF7375at 5.035 kb on - strand, within GFF7375at 5.035 kb on - strand, within GFF7375at 5.035 kb on - strand, within GFF7375at 5.035 kb on - strand, within GFF7375at 5.035 kb on - strand, within GFF7375at 5.145 kb on + strand, within GFF7375at 5.145 kb on + strand, within GFF7375at 5.145 kb on + strand, within GFF7375at 5.145 kb on + strand, within GFF7375at 5.145 kb on + strand, within GFF7375at 5.145 kb on + strand, within GFF7375at 5.145 kb on + strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.277 kb on + strand, within GFF7375at 5.371 kb on - strand, within GFF7375at 5.415 kb on - strand, within GFF7375at 5.437 kb on + strand, within GFF7375at 5.493 kb on + strand, within GFF7375at 5.493 kb on + strand, within GFF7375at 5.493 kb on + strand, within GFF7375at 5.493 kb on + strand, within GFF7375at 5.493 kb on + strand, within GFF7375at 5.493 kb on + strand, within GFF7375at 5.494 kb on - strand, within GFF7375at 5.494 kb on - strand, within GFF7375at 5.494 kb on - strand, within GFF7375at 5.494 kb on - strand, within GFF7375at 5.494 kb on - strand, within GFF7375at 5.541 kb on + strand, within GFF7375at 5.541 kb on + strand, within GFF7375at 5.542 kb on - strand, within GFF7375at 5.542 kb on - strand, within GFF7375at 5.542 kb on - strand, within GFF7375at 5.542 kb on - strand, within GFF7375at 5.653 kb on - strand, within GFF7375at 5.653 kb on - strand, within GFF7375at 5.727 kb on + strand, within GFF7375at 5.727 kb on + strand, within GFF7375at 5.727 kb on + strand, within GFF7375at 5.727 kb on + strand, within GFF7375at 5.728 kb on - strand, within GFF7375at 5.728 kb on - strand, within GFF7375at 5.728 kb on - strand, within GFF7375at 5.728 kb on - strand, within GFF7375at 5.728 kb on - strand, within GFF7375at 5.728 kb on - strand, within GFF7375

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
remove
3,097 + GFF7373 0.60 -0.8
3,097 + GFF7373 0.60 -0.8
3,097 + GFF7373 0.60 +0.5
3,097 + GFF7373 0.60 -0.8
3,097 + GFF7373 0.60 +0.3
3,097 + GFF7373 0.60 +1.3
3,098 - GFF7373 0.60 +0.0
3,098 - GFF7373 0.60 +0.1
3,098 - GFF7373 0.60 +1.4
3,098 - GFF7373 0.60 -0.1
3,098 - GFF7373 0.60 -0.5
3,098 - GFF7373 0.60 -0.2
3,098 - GFF7373 0.60 -0.9
3,098 - GFF7373 0.60 -0.9
3,348 + GFF7373 0.78 -2.6
3,348 + GFF7373 0.78 +0.3
3,417 - GFF7373 0.83 -0.1
3,508 - GFF7373 0.90 -0.5
3,558 - -0.9
3,558 - -0.2
3,558 - +0.6
3,673 + -0.2
4,009 + GFF7374 0.32 -0.3
4,111 + GFF7374 0.41 -0.1
4,111 + GFF7374 0.41 -0.1
4,111 + GFF7374 0.41 +0.2
4,111 + GFF7374 0.41 -1.0
4,111 + GFF7374 0.41 +1.0
4,112 - GFF7374 0.41 -0.8
4,112 - GFF7374 0.41 -0.6
4,112 - GFF7374 0.41 -0.2
4,114 + GFF7374 0.42 +0.7
4,114 + GFF7374 0.42 +0.1
4,114 + GFF7374 0.42 -1.3
4,114 + GFF7374 0.42 +1.4
4,114 + GFF7374 0.42 +1.0
4,115 - GFF7374 0.42 +0.9
4,115 - GFF7374 0.42 -0.7
4,115 - GFF7374 0.42 -0.3
4,115 - GFF7374 0.42 +0.1
4,231 + GFF7374 0.52 +0.3
4,231 + GFF7374 0.52 -0.6
4,231 + GFF7374 0.52 -0.2
4,345 + GFF7374 0.63 -2.0
4,345 + GFF7374 0.63 -0.6
4,345 + GFF7374 0.63 +0.3
4,346 - GFF7374 0.63 +0.1
4,346 - GFF7374 0.63 -0.3
4,346 - GFF7374 0.63 -1.8
4,346 - GFF7374 0.63 +0.9
4,582 + GFF7374 0.85 +0.3
4,582 + GFF7374 0.85 -0.4
4,582 + GFF7374 0.85 -2.1
4,582 + GFF7374 0.85 +2.2
4,583 - GFF7374 0.85 -0.6
4,583 - GFF7374 0.85 +0.4
4,583 - GFF7374 0.85 +0.0
4,583 - GFF7374 0.85 -0.2
4,583 - GFF7374 0.85 -0.5
4,583 - GFF7374 0.85 +0.9
4,583 - GFF7374 0.85 -1.4
4,583 - GFF7374 0.85 +0.7
4,607 - GFF7374 0.87 +0.4
4,615 + GFF7374 0.88 +0.3
4,616 - GFF7374 0.88 +0.7
4,830 + -0.3
4,831 - +0.8
4,831 - -0.1
5,034 + GFF7375 0.24 +0.2
5,034 + GFF7375 0.24 -0.4
5,034 + GFF7375 0.24 -0.6
5,034 + GFF7375 0.24 +1.6
5,035 - GFF7375 0.24 -0.7
5,035 - GFF7375 0.24 -0.2
5,035 - GFF7375 0.24 -0.9
5,035 - GFF7375 0.24 +1.7
5,035 - GFF7375 0.24 -1.5
5,035 - GFF7375 0.24 +0.2
5,145 + GFF7375 0.33 -0.9
5,145 + GFF7375 0.33 -0.1
5,145 + GFF7375 0.33 +0.3
5,145 + GFF7375 0.33 +3.1
5,145 + GFF7375 0.33 -0.2
5,145 + GFF7375 0.33 -1.5
5,145 + GFF7375 0.33 +0.7
5,146 - GFF7375 0.33 +0.1
5,146 - GFF7375 0.33 -0.3
5,146 - GFF7375 0.33 -0.1
5,146 - GFF7375 0.33 -0.3
5,146 - GFF7375 0.33 +0.1
5,146 - GFF7375 0.33 -0.9
5,146 - GFF7375 0.33 -1.3
5,146 - GFF7375 0.33 -1.0
5,146 - GFF7375 0.33 +0.3
5,146 - GFF7375 0.33 -0.1
5,146 - GFF7375 0.33 +0.7
5,146 - GFF7375 0.33 -0.5
5,146 - GFF7375 0.33 -0.0
5,146 - GFF7375 0.33 -1.3
5,146 - GFF7375 0.33 -0.2
5,277 + GFF7375 0.44 -0.9
5,371 - GFF7375 0.52 +0.2
5,415 - GFF7375 0.55 +1.0
5,437 + GFF7375 0.57 -0.5
5,493 + GFF7375 0.62 -0.3
5,493 + GFF7375 0.62 -0.7
5,493 + GFF7375 0.62 -0.9
5,493 + GFF7375 0.62 +0.5
5,493 + GFF7375 0.62 -2.4
5,493 + GFF7375 0.62 -0.9
5,494 - GFF7375 0.62 -0.4
5,494 - GFF7375 0.62 -1.0
5,494 - GFF7375 0.62 +0.1
5,494 - GFF7375 0.62 +1.8
5,494 - GFF7375 0.62 -0.3
5,541 + GFF7375 0.66 -0.7
5,541 + GFF7375 0.66 +0.2
5,542 - GFF7375 0.66 +2.0
5,542 - GFF7375 0.66 -1.3
5,542 - GFF7375 0.66 -0.1
5,542 - GFF7375 0.66 -0.2
5,653 - GFF7375 0.75 +0.9
5,653 - GFF7375 0.75 -0.6
5,727 + GFF7375 0.81 +0.4
5,727 + GFF7375 0.81 -1.1
5,727 + GFF7375 0.81 -1.1
5,727 + GFF7375 0.81 -0.6
5,728 - GFF7375 0.81 +0.4
5,728 - GFF7375 0.81 -1.0
5,728 - GFF7375 0.81 -0.9
5,728 - GFF7375 0.81 -0.7
5,728 - GFF7375 0.81 -0.7
5,728 - GFF7375 0.81 +0.1

Or see this region's nucleotide sequence