Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7244 and GFF7245 are separated by 196 nucleotides GFF7245 and GFF7246 are separated by 1 nucleotides GFF7246 and GFF7247 are separated by 11 nucleotides GFF7247 and GFF7248 are separated by 38 nucleotides GFF7248 and GFF7249 overlap by 4 nucleotides
GFF7244 - no description, at 25,237 to 25,764
GFF7244
GFF7245 - universal stress protein, UspA family, at 25,961 to 26,383
GFF7245
GFF7246 - HtrA protease/chaperone protein, at 26,385 to 27,824
GFF7246
GFF7247 - no description, at 27,836 to 28,369
GFF7247
GFF7248 - no description, at 28,408 to 28,563
GFF7248
GFF7249 - no description, at 28,560 to 28,865
GFF7249
Position (kb) 26
27
28 Strain fitness (log2 ratio) -2
-1
0
1
2 at 25.734 kb on - strand at 25.740 kb on - strand at 25.994 kb on + strand at 26.126 kb on + strand, within GFF7245 at 26.126 kb on + strand, within GFF7245 at 26.682 kb on + strand, within GFF7246 at 26.682 kb on + strand, within GFF7246 at 26.682 kb on + strand, within GFF7246 at 26.946 kb on + strand, within GFF7246 at 26.946 kb on + strand, within GFF7246 at 26.946 kb on + strand, within GFF7246 at 26.947 kb on - strand, within GFF7246 at 26.947 kb on - strand, within GFF7246 at 26.947 kb on - strand, within GFF7246 at 26.947 kb on - strand, within GFF7246 at 27.066 kb on + strand, within GFF7246 at 27.067 kb on - strand, within GFF7246 at 27.253 kb on + strand, within GFF7246 at 27.253 kb on + strand, within GFF7246 at 27.254 kb on - strand, within GFF7246 at 27.343 kb on - strand, within GFF7246 at 27.343 kb on - strand, within GFF7246 at 27.570 kb on + strand, within GFF7246 at 27.570 kb on + strand, within GFF7246 at 27.570 kb on + strand, within GFF7246 at 27.570 kb on + strand, within GFF7246 at 27.571 kb on - strand, within GFF7246 at 27.571 kb on - strand, within GFF7246 at 27.604 kb on + strand, within GFF7246 at 27.744 kb on + strand at 27.744 kb on + strand at 27.745 kb on - strand at 27.745 kb on - strand at 27.748 kb on + strand at 27.748 kb on + strand at 27.749 kb on - strand at 27.749 kb on - strand at 27.816 kb on - strand at 27.927 kb on + strand, within GFF7247 at 27.928 kb on - strand, within GFF7247 at 27.928 kb on - strand, within GFF7247 at 27.928 kb on - strand, within GFF7247 at 28.128 kb on - strand, within GFF7247 at 28.275 kb on - strand, within GFF7247 at 28.427 kb on + strand, within GFF7248 at 28.428 kb on - strand, within GFF7248 at 28.683 kb on + strand, within GFF7249
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 25,734 - -2.2 25,740 - +0.8 25,994 + -0.6 26,126 + GFF7245 0.39 +2.4 26,126 + GFF7245 0.39 -0.3 26,682 + GFF7246 0.21 -0.1 26,682 + GFF7246 0.21 +0.2 26,682 + GFF7246 0.21 +1.4 26,946 + GFF7246 0.39 -0.5 26,946 + GFF7246 0.39 -0.6 26,946 + GFF7246 0.39 -0.6 26,947 - GFF7246 0.39 +0.6 26,947 - GFF7246 0.39 -1.1 26,947 - GFF7246 0.39 -0.4 26,947 - GFF7246 0.39 -1.3 27,066 + GFF7246 0.47 -0.2 27,067 - GFF7246 0.47 +0.6 27,253 + GFF7246 0.60 -1.6 27,253 + GFF7246 0.60 -0.1 27,254 - GFF7246 0.60 -0.9 27,343 - GFF7246 0.67 +0.3 27,343 - GFF7246 0.67 +0.3 27,570 + GFF7246 0.82 +1.7 27,570 + GFF7246 0.82 +0.0 27,570 + GFF7246 0.82 +0.4 27,570 + GFF7246 0.82 -0.3 27,571 - GFF7246 0.82 +0.2 27,571 - GFF7246 0.82 +0.4 27,604 + GFF7246 0.85 +0.9 27,744 + -1.0 27,744 + -0.7 27,745 - -0.3 27,745 - +0.3 27,748 + -0.3 27,748 + +0.1 27,749 - +0.1 27,749 - -1.9 27,816 - -1.1 27,927 + GFF7247 0.17 -0.2 27,928 - GFF7247 0.17 -0.1 27,928 - GFF7247 0.17 +0.9 27,928 - GFF7247 0.17 -0.1 28,128 - GFF7247 0.55 -0.0 28,275 - GFF7247 0.82 -0.9 28,427 + GFF7248 0.12 -0.2 28,428 - GFF7248 0.13 -0.8 28,683 + GFF7249 0.40 -0.8
Or see this region's nucleotide sequence