Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7162 and GFF7163 are separated by 85 nucleotides GFF7163 and GFF7164 are separated by 10 nucleotides GFF7164 and GFF7165 are separated by 8 nucleotides
GFF7162 - DNA helicase II related protein, at 26,055 to 27,818
GFF7162
GFF7163 - FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8), at 27,904 to 28,380
GFF7163
GFF7164 - hypothetical protein, at 28,391 to 29,077
GFF7164
GFF7165 - Adenylate cyclase (EC 4.6.1.1), at 29,086 to 30,669
GFF7165
Position (kb) 27
28
29 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 26.967 kb on + strand, within GFF7162 at 26.967 kb on + strand, within GFF7162 at 26.967 kb on + strand, within GFF7162 at 26.967 kb on + strand, within GFF7162 at 26.967 kb on + strand, within GFF7162 at 26.967 kb on + strand, within GFF7162 at 26.967 kb on + strand, within GFF7162 at 26.967 kb on + strand, within GFF7162 at 26.967 kb on + strand, within GFF7162 at 26.967 kb on + strand, within GFF7162 at 26.967 kb on + strand, within GFF7162 at 26.967 kb on + strand, within GFF7162 at 26.967 kb on + strand, within GFF7162 at 26.967 kb on + strand, within GFF7162 at 26.967 kb on + strand, within GFF7162 at 26.968 kb on - strand, within GFF7162 at 26.968 kb on - strand, within GFF7162 at 26.968 kb on - strand, within GFF7162 at 26.968 kb on - strand, within GFF7162 at 26.968 kb on - strand, within GFF7162 at 26.968 kb on - strand, within GFF7162 at 26.968 kb on - strand, within GFF7162 at 26.968 kb on - strand, within GFF7162 at 26.968 kb on - strand, within GFF7162 at 26.968 kb on - strand, within GFF7162 at 26.968 kb on - strand, within GFF7162 at 26.968 kb on - strand, within GFF7162 at 26.968 kb on - strand, within GFF7162 at 26.968 kb on - strand, within GFF7162 at 26.968 kb on - strand, within GFF7162 at 26.968 kb on - strand, within GFF7162 at 26.968 kb on - strand, within GFF7162 at 26.968 kb on - strand, within GFF7162 at 26.968 kb on - strand, within GFF7162 at 26.968 kb on - strand, within GFF7162 at 26.968 kb on - strand, within GFF7162 at 26.968 kb on - strand, within GFF7162 at 26.968 kb on - strand, within GFF7162 at 26.968 kb on - strand, within GFF7162 at 26.968 kb on - strand, within GFF7162 at 26.969 kb on - strand, within GFF7162 at 27.072 kb on + strand, within GFF7162 at 27.072 kb on + strand, within GFF7162 at 27.073 kb on - strand, within GFF7162 at 27.073 kb on - strand, within GFF7162 at 27.073 kb on - strand, within GFF7162 at 27.156 kb on + strand, within GFF7162 at 27.174 kb on + strand, within GFF7162 at 27.174 kb on + strand, within GFF7162 at 27.174 kb on + strand, within GFF7162 at 27.174 kb on + strand, within GFF7162 at 27.175 kb on - strand, within GFF7162 at 27.175 kb on - strand, within GFF7162 at 27.195 kb on + strand, within GFF7162 at 27.195 kb on + strand, within GFF7162 at 27.195 kb on + strand, within GFF7162 at 27.195 kb on + strand, within GFF7162 at 27.195 kb on + strand, within GFF7162 at 27.195 kb on + strand, within GFF7162 at 27.195 kb on + strand, within GFF7162 at 27.195 kb on + strand, within GFF7162 at 27.195 kb on + strand, within GFF7162 at 27.196 kb on - strand, within GFF7162 at 27.196 kb on - strand, within GFF7162 at 27.196 kb on - strand, within GFF7162 at 27.196 kb on - strand, within GFF7162 at 27.196 kb on - strand, within GFF7162 at 27.196 kb on - strand, within GFF7162 at 27.196 kb on - strand, within GFF7162 at 27.196 kb on - strand, within GFF7162 at 27.196 kb on - strand, within GFF7162 at 27.196 kb on - strand, within GFF7162 at 27.196 kb on - strand, within GFF7162 at 27.196 kb on - strand, within GFF7162 at 27.196 kb on - strand, within GFF7162 at 27.279 kb on + strand, within GFF7162 at 27.451 kb on - strand, within GFF7162 at 27.525 kb on + strand, within GFF7162 at 27.525 kb on + strand, within GFF7162 at 27.525 kb on + strand, within GFF7162 at 27.525 kb on + strand, within GFF7162 at 27.525 kb on + strand, within GFF7162 at 27.525 kb on + strand, within GFF7162 at 27.525 kb on + strand, within GFF7162 at 27.525 kb on + strand, within GFF7162 at 27.525 kb on + strand, within GFF7162 at 27.525 kb on + strand, within GFF7162 at 27.526 kb on - strand, within GFF7162 at 27.526 kb on - strand, within GFF7162 at 27.526 kb on - strand, within GFF7162 at 27.526 kb on - strand, within GFF7162 at 27.526 kb on - strand, within GFF7162 at 27.526 kb on - strand, within GFF7162 at 27.526 kb on - strand, within GFF7162 at 27.526 kb on - strand, within GFF7162 at 27.526 kb on - strand, within GFF7162 at 27.526 kb on - strand, within GFF7162 at 27.741 kb on + strand at 27.741 kb on + strand at 27.741 kb on + strand at 27.741 kb on + strand at 27.741 kb on + strand at 27.741 kb on + strand at 27.741 kb on + strand at 27.741 kb on + strand at 27.741 kb on + strand at 27.741 kb on + strand at 27.741 kb on + strand at 27.741 kb on + strand at 27.741 kb on + strand at 27.741 kb on + strand at 27.742 kb on - strand at 27.742 kb on - strand at 27.742 kb on - strand at 27.742 kb on - strand at 27.742 kb on - strand at 27.742 kb on - strand at 27.742 kb on - strand at 27.742 kb on - strand at 27.742 kb on - strand at 27.742 kb on - strand at 27.742 kb on - strand at 27.742 kb on - strand at 27.742 kb on - strand at 27.742 kb on - strand at 27.742 kb on - strand at 27.742 kb on - strand at 27.742 kb on - strand at 27.940 kb on + strand at 27.940 kb on + strand at 27.940 kb on + strand at 27.940 kb on + strand at 27.940 kb on + strand at 27.940 kb on + strand at 27.940 kb on + strand at 27.940 kb on + strand at 27.940 kb on + strand at 27.940 kb on + strand at 27.940 kb on + strand at 27.940 kb on + strand at 27.940 kb on + strand at 27.940 kb on + strand at 27.941 kb on - strand at 27.941 kb on - strand at 27.941 kb on - strand at 27.941 kb on - strand at 27.941 kb on - strand at 27.941 kb on - strand at 27.941 kb on - strand at 27.941 kb on - strand at 27.941 kb on - strand at 27.941 kb on - strand at 27.997 kb on + strand, within GFF7163 at 27.997 kb on + strand, within GFF7163 at 27.997 kb on + strand, within GFF7163 at 27.998 kb on - strand, within GFF7163 at 28.012 kb on + strand, within GFF7163 at 28.013 kb on - strand, within GFF7163 at 28.066 kb on + strand, within GFF7163 at 28.066 kb on + strand, within GFF7163 at 28.066 kb on + strand, within GFF7163 at 28.067 kb on - strand, within GFF7163 at 28.067 kb on - strand, within GFF7163 at 28.229 kb on - strand, within GFF7163 at 28.392 kb on + strand at 28.392 kb on + strand at 28.392 kb on + strand at 28.392 kb on + strand at 28.392 kb on + strand at 28.392 kb on + strand at 28.392 kb on + strand at 28.393 kb on - strand at 28.393 kb on - strand at 28.393 kb on - strand at 28.393 kb on - strand at 28.430 kb on + strand at 28.430 kb on + strand at 28.430 kb on + strand at 28.430 kb on + strand at 28.430 kb on + strand at 28.431 kb on - strand at 28.431 kb on - strand at 28.431 kb on - strand at 28.431 kb on - strand at 28.431 kb on - strand at 28.431 kb on - strand at 28.431 kb on - strand at 28.461 kb on + strand, within GFF7164 at 28.461 kb on + strand, within GFF7164 at 28.461 kb on + strand, within GFF7164 at 28.461 kb on + strand, within GFF7164 at 28.461 kb on + strand, within GFF7164 at 28.462 kb on - strand, within GFF7164 at 28.503 kb on + strand, within GFF7164 at 28.503 kb on + strand, within GFF7164 at 28.504 kb on - strand, within GFF7164 at 28.504 kb on - strand, within GFF7164 at 28.504 kb on - strand, within GFF7164 at 28.536 kb on + strand, within GFF7164 at 28.536 kb on + strand, within GFF7164 at 28.536 kb on + strand, within GFF7164 at 28.536 kb on + strand, within GFF7164 at 28.536 kb on + strand, within GFF7164 at 28.536 kb on + strand, within GFF7164 at 28.537 kb on - strand, within GFF7164 at 28.537 kb on - strand, within GFF7164 at 28.537 kb on - strand, within GFF7164 at 28.537 kb on - strand, within GFF7164 at 28.537 kb on - strand, within GFF7164 at 28.537 kb on - strand, within GFF7164 at 28.537 kb on - strand, within GFF7164 at 28.545 kb on + strand, within GFF7164 at 28.545 kb on + strand, within GFF7164 at 28.546 kb on - strand, within GFF7164 at 28.546 kb on - strand, within GFF7164 at 28.546 kb on - strand, within GFF7164 at 28.546 kb on - strand, within GFF7164 at 28.546 kb on - strand, within GFF7164 at 28.546 kb on - strand, within GFF7164 at 28.881 kb on + strand, within GFF7164 at 28.882 kb on - strand, within GFF7164 at 28.882 kb on - strand, within GFF7164 at 29.087 kb on + strand at 29.087 kb on + strand at 29.087 kb on + strand at 29.088 kb on - strand at 29.088 kb on - strand at 29.225 kb on + strand at 29.225 kb on + strand at 29.226 kb on - strand at 29.297 kb on + strand, within GFF7165 at 29.297 kb on + strand, within GFF7165 at 29.298 kb on - strand, within GFF7165 at 29.298 kb on - strand, within GFF7165 at 29.298 kb on - strand, within GFF7165 at 29.298 kb on - strand, within GFF7165 at 29.357 kb on + strand, within GFF7165 at 29.357 kb on + strand, within GFF7165 at 29.358 kb on - strand, within GFF7165 at 29.358 kb on - strand, within GFF7165 at 29.358 kb on - strand, within GFF7165 at 29.358 kb on - strand, within GFF7165 at 29.358 kb on - strand, within GFF7165 at 29.358 kb on - strand, within GFF7165
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 26,967 + GFF7162 0.52 -0.2 26,967 + GFF7162 0.52 +0.7 26,967 + GFF7162 0.52 -0.5 26,967 + GFF7162 0.52 -1.6 26,967 + GFF7162 0.52 -1.9 26,967 + GFF7162 0.52 -1.1 26,967 + GFF7162 0.52 -1.2 26,967 + GFF7162 0.52 -0.3 26,967 + GFF7162 0.52 -0.9 26,967 + GFF7162 0.52 -0.5 26,967 + GFF7162 0.52 +0.5 26,967 + GFF7162 0.52 +2.0 26,967 + GFF7162 0.52 +0.7 26,967 + GFF7162 0.52 +0.5 26,967 + GFF7162 0.52 +0.5 26,968 - GFF7162 0.52 -0.9 26,968 - GFF7162 0.52 -0.8 26,968 - GFF7162 0.52 +1.1 26,968 - GFF7162 0.52 -0.4 26,968 - GFF7162 0.52 -0.0 26,968 - GFF7162 0.52 -0.6 26,968 - GFF7162 0.52 -0.2 26,968 - GFF7162 0.52 -0.1 26,968 - GFF7162 0.52 -0.5 26,968 - GFF7162 0.52 +0.3 26,968 - GFF7162 0.52 +0.0 26,968 - GFF7162 0.52 +1.9 26,968 - GFF7162 0.52 -1.5 26,968 - GFF7162 0.52 +0.2 26,968 - GFF7162 0.52 +0.6 26,968 - GFF7162 0.52 -0.7 26,968 - GFF7162 0.52 -0.6 26,968 - GFF7162 0.52 -0.3 26,968 - GFF7162 0.52 -0.5 26,968 - GFF7162 0.52 -0.3 26,968 - GFF7162 0.52 -0.1 26,968 - GFF7162 0.52 -0.9 26,968 - GFF7162 0.52 -0.0 26,968 - GFF7162 0.52 -0.3 26,968 - GFF7162 0.52 -0.3 26,969 - GFF7162 0.52 +0.9 27,072 + GFF7162 0.58 +0.4 27,072 + GFF7162 0.58 +0.1 27,073 - GFF7162 0.58 +0.9 27,073 - GFF7162 0.58 +1.9 27,073 - GFF7162 0.58 +1.9 27,156 + GFF7162 0.62 +0.2 27,174 + GFF7162 0.63 -0.7 27,174 + GFF7162 0.63 -0.7 27,174 + GFF7162 0.63 -0.7 27,174 + GFF7162 0.63 -0.6 27,175 - GFF7162 0.63 -2.0 27,175 - GFF7162 0.63 -0.6 27,195 + GFF7162 0.65 -2.3 27,195 + GFF7162 0.65 -0.7 27,195 + GFF7162 0.65 -0.2 27,195 + GFF7162 0.65 -1.3 27,195 + GFF7162 0.65 +2.5 27,195 + GFF7162 0.65 -1.2 27,195 + GFF7162 0.65 -0.4 27,195 + GFF7162 0.65 +1.2 27,195 + GFF7162 0.65 +0.1 27,196 - GFF7162 0.65 +0.3 27,196 - GFF7162 0.65 -0.1 27,196 - GFF7162 0.65 -0.2 27,196 - GFF7162 0.65 -0.1 27,196 - GFF7162 0.65 -1.5 27,196 - GFF7162 0.65 +0.3 27,196 - GFF7162 0.65 -0.5 27,196 - GFF7162 0.65 -0.2 27,196 - GFF7162 0.65 +0.1 27,196 - GFF7162 0.65 +0.2 27,196 - GFF7162 0.65 +0.1 27,196 - GFF7162 0.65 -0.2 27,196 - GFF7162 0.65 -1.1 27,279 + GFF7162 0.69 -0.4 27,451 - GFF7162 0.79 +0.1 27,525 + GFF7162 0.83 -0.3 27,525 + GFF7162 0.83 +0.0 27,525 + GFF7162 0.83 +0.2 27,525 + GFF7162 0.83 -0.3 27,525 + GFF7162 0.83 -0.6 27,525 + GFF7162 0.83 +0.3 27,525 + GFF7162 0.83 +0.0 27,525 + GFF7162 0.83 -1.3 27,525 + GFF7162 0.83 -0.5 27,525 + GFF7162 0.83 -1.0 27,526 - GFF7162 0.83 -0.1 27,526 - GFF7162 0.83 -0.6 27,526 - GFF7162 0.83 -0.5 27,526 - GFF7162 0.83 -0.1 27,526 - GFF7162 0.83 +0.4 27,526 - GFF7162 0.83 +1.5 27,526 - GFF7162 0.83 -0.2 27,526 - GFF7162 0.83 -0.0 27,526 - GFF7162 0.83 +1.0 27,526 - GFF7162 0.83 +3.0 27,741 + -0.9 27,741 + -0.9 27,741 + +1.9 27,741 + -0.0 27,741 + -0.7 27,741 + -1.5 27,741 + -0.4 27,741 + -0.4 27,741 + +0.6 27,741 + -0.6 27,741 + +1.9 27,741 + +1.4 27,741 + -0.7 27,741 + -0.6 27,742 - -0.4 27,742 - -1.5 27,742 - +0.6 27,742 - +0.6 27,742 - -0.8 27,742 - -0.9 27,742 - -0.1 27,742 - -1.1 27,742 - -0.7 27,742 - -0.7 27,742 - -0.3 27,742 - +0.1 27,742 - -2.0 27,742 - +0.3 27,742 - +0.3 27,742 - -0.4 27,742 - +1.6 27,940 + +0.8 27,940 + -0.1 27,940 + -0.4 27,940 + +0.4 27,940 + +0.1 27,940 + +0.4 27,940 + +0.0 27,940 + +0.7 27,940 + +0.5 27,940 + +1.1 27,940 + -0.8 27,940 + -0.8 27,940 + +0.4 27,940 + -0.4 27,941 - +0.9 27,941 - -0.1 27,941 - +0.2 27,941 - +0.1 27,941 - -0.7 27,941 - +2.3 27,941 - -1.4 27,941 - -0.2 27,941 - +0.3 27,941 - -0.4 27,997 + GFF7163 0.19 -1.3 27,997 + GFF7163 0.19 -0.0 27,997 + GFF7163 0.19 -0.7 27,998 - GFF7163 0.20 -1.3 28,012 + GFF7163 0.23 -1.5 28,013 - GFF7163 0.23 -1.1 28,066 + GFF7163 0.34 +0.2 28,066 + GFF7163 0.34 +1.5 28,066 + GFF7163 0.34 -1.1 28,067 - GFF7163 0.34 -0.1 28,067 - GFF7163 0.34 +0.5 28,229 - GFF7163 0.68 -0.4 28,392 + +0.3 28,392 + +0.1 28,392 + -0.2 28,392 + -0.4 28,392 + -0.4 28,392 + +0.1 28,392 + -0.9 28,393 - +0.9 28,393 - -0.5 28,393 - +0.0 28,393 - -0.8 28,430 + -0.9 28,430 + -0.1 28,430 + -0.8 28,430 + -0.9 28,430 + +0.1 28,431 - +0.1 28,431 - -0.8 28,431 - -0.0 28,431 - +0.2 28,431 - -0.3 28,431 - -0.2 28,431 - -0.1 28,461 + GFF7164 0.10 -0.5 28,461 + GFF7164 0.10 -0.3 28,461 + GFF7164 0.10 -0.5 28,461 + GFF7164 0.10 -0.5 28,461 + GFF7164 0.10 -0.0 28,462 - GFF7164 0.10 +0.5 28,503 + GFF7164 0.16 +0.9 28,503 + GFF7164 0.16 +1.5 28,504 - GFF7164 0.16 +0.8 28,504 - GFF7164 0.16 -2.0 28,504 - GFF7164 0.16 +0.8 28,536 + GFF7164 0.21 -0.0 28,536 + GFF7164 0.21 +1.3 28,536 + GFF7164 0.21 +0.2 28,536 + GFF7164 0.21 -0.2 28,536 + GFF7164 0.21 +0.1 28,536 + GFF7164 0.21 +0.3 28,537 - GFF7164 0.21 -0.1 28,537 - GFF7164 0.21 +1.4 28,537 - GFF7164 0.21 -1.6 28,537 - GFF7164 0.21 +0.4 28,537 - GFF7164 0.21 -0.0 28,537 - GFF7164 0.21 -0.8 28,537 - GFF7164 0.21 +0.6 28,545 + GFF7164 0.22 -0.7 28,545 + GFF7164 0.22 -0.0 28,546 - GFF7164 0.23 +0.4 28,546 - GFF7164 0.23 -0.9 28,546 - GFF7164 0.23 +0.2 28,546 - GFF7164 0.23 -0.9 28,546 - GFF7164 0.23 -1.1 28,546 - GFF7164 0.23 -0.1 28,881 + GFF7164 0.71 +1.4 28,882 - GFF7164 0.71 +0.0 28,882 - GFF7164 0.71 -0.2 29,087 + -0.1 29,087 + -1.3 29,087 + -0.8 29,088 - -0.6 29,088 - +0.1 29,225 + -0.4 29,225 + -0.6 29,226 - -1.0 29,297 + GFF7165 0.13 -0.1 29,297 + GFF7165 0.13 +1.0 29,298 - GFF7165 0.13 -0.7 29,298 - GFF7165 0.13 +0.1 29,298 - GFF7165 0.13 -1.3 29,298 - GFF7165 0.13 -0.3 29,357 + GFF7165 0.17 -0.0 29,357 + GFF7165 0.17 +0.3 29,358 - GFF7165 0.17 +0.9 29,358 - GFF7165 0.17 -1.1 29,358 - GFF7165 0.17 +0.6 29,358 - GFF7165 0.17 -0.5 29,358 - GFF7165 0.17 -0.5 29,358 - GFF7165 0.17 +0.9
Or see this region's nucleotide sequence