Strain Fitness in Variovorax sp. SCN45

Strain Fitness in Variovorax sp. SCN45 around GFF7134

Experiment: M9 with Supernatant from Cyptococcus

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	M9 with Supernatant from Cyptococcus
				remove
1,197	+	GFF7133	0.40	-0.9
1,197	+	GFF7133	0.40	-0.5
1,198	-	GFF7133	0.40	-0.9
1,198	-	GFF7133	0.40	+1.5
1,198	-	GFF7133	0.40	-0.1
1,198	-	GFF7133	0.40	+0.3
1,198	-	GFF7133	0.40	-0.6
1,198	-	GFF7133	0.40	+0.9
1,198	-	GFF7133	0.40	-0.3
1,198	-	GFF7133	0.40	+0.2
1,206	+	GFF7133	0.40	-0.1
1,888	+			-0.1
1,888	+			-0.7
1,888	+			-0.5
1,889	-			-0.6
1,889	-			-2.5
1,889	-			+0.9
1,919	+			+0.1
1,919	+			-0.5
1,919	+			+0.2
1,919	+			+0.1
1,919	+			-0.5
1,919	+			-0.8
1,919	+			-0.1
1,919	+			-1.4
1,920	-			+0.3
1,920	-			+0.4
1,920	-			-0.3
1,920	-			-1.2
1,920	-			+0.9
2,230	+	GFF7134	0.20	+1.4
2,230	+	GFF7134	0.20	-0.5
2,230	+	GFF7134	0.20	-0.1
2,231	-	GFF7134	0.20	-0.3
2,231	-	GFF7134	0.20	-0.2
2,231	-	GFF7134	0.20	+0.3
2,231	-	GFF7134	0.20	-1.0
2,231	-	GFF7134	0.20	-0.2
2,343	+	GFF7134	0.28	-0.5
2,343	+	GFF7134	0.28	-0.5
2,343	+	GFF7134	0.28	+1.1
2,343	+	GFF7134	0.28	+0.2
2,344	-	GFF7134	0.28	-0.2
2,344	-	GFF7134	0.28	+0.1
2,344	-	GFF7134	0.28	-0.6
2,428	+	GFF7134	0.34	+0.3
2,428	+	GFF7134	0.34	-0.5
2,428	+	GFF7134	0.34	-0.0
2,428	+	GFF7134	0.34	-0.0
2,429	-	GFF7134	0.34	-0.7
2,429	-	GFF7134	0.34	-0.0
2,429	-	GFF7134	0.34	-0.9
2,429	-	GFF7134	0.34	-0.0
2,429	-	GFF7134	0.34	+0.3
2,429	-	GFF7134	0.34	-0.0
2,429	-	GFF7134	0.34	+0.4
2,503	+	GFF7134	0.39	-0.2
2,503	+	GFF7134	0.39	-0.7
2,503	+	GFF7134	0.39	+0.8
2,503	+	GFF7134	0.39	-1.0
2,504	-	GFF7134	0.39	+0.7
2,504	-	GFF7134	0.39	+0.7
2,504	-	GFF7134	0.39	+0.2
2,504	-	GFF7134	0.39	-2.2
2,504	-	GFF7134	0.39	-0.4
2,504	-	GFF7134	0.39	-0.5
2,504	-	GFF7134	0.39	-0.4
2,504	-	GFF7134	0.39	-1.1
2,725	+	GFF7134	0.54	-0.0
2,725	+	GFF7134	0.54	-0.5
2,725	+	GFF7134	0.54	+0.1
2,725	+	GFF7134	0.54	-1.2
2,725	+	GFF7134	0.54	-0.1
2,725	+	GFF7134	0.54	-1.1
2,726	-	GFF7134	0.54	-0.1
2,726	-	GFF7134	0.54	-0.8
2,726	-	GFF7134	0.54	-0.7
2,726	-	GFF7134	0.54	-0.3
2,857	+	GFF7134	0.63	-0.8
2,911	+	GFF7134	0.67	+1.6
2,912	-	GFF7134	0.67	+0.5
3,154	+	GFF7134	0.83	+0.5
3,154	+	GFF7134	0.83	-0.8
3,154	+	GFF7134	0.83	-1.9
3,154	+	GFF7134	0.83	-1.1
3,154	+	GFF7134	0.83	-0.1
3,154	+	GFF7134	0.83	-1.4
3,154	+	GFF7134	0.83	+0.3
3,154	+	GFF7134	0.83	+0.5
3,154	+	GFF7134	0.83	-0.7
3,154	+	GFF7134	0.83	+0.5
3,154	+	GFF7134	0.83	+1.5
3,154	+	GFF7134	0.83	+0.9
3,154	+	GFF7134	0.83	-1.6
3,154	+	GFF7134	0.83	+1.5
3,154	+	GFF7134	0.83	-0.3
3,154	+	GFF7134	0.83	-0.5
3,154	+	GFF7134	0.83	+0.0
3,154	+	GFF7134	0.83	+0.4
3,154	+	GFF7134	0.83	-0.1
3,154	+	GFF7134	0.83	-0.8
3,154	+	GFF7134	0.83	+0.2
3,154	+	GFF7134	0.83	-0.7
3,155	-	GFF7134	0.83	-1.5
3,155	-	GFF7134	0.83	+0.1
3,155	-	GFF7134	0.83	-0.4
3,155	-	GFF7134	0.83	-1.9
3,155	-	GFF7134	0.83	-0.3
3,155	-	GFF7134	0.83	-0.4
3,155	-	GFF7134	0.83	-1.2
3,155	-	GFF7134	0.83	-0.2
3,155	-	GFF7134	0.83	-0.9
3,155	-	GFF7134	0.83	-0.7
3,155	-	GFF7134	0.83	+0.1
3,155	-	GFF7134	0.83	-0.9
3,155	-	GFF7134	0.83	-0.0
3,155	-	GFF7134	0.83	-0.3
3,155	-	GFF7134	0.83	-0.4
3,155	-	GFF7134	0.83	-0.6
3,155	-	GFF7134	0.83	+0.3
3,155	-	GFF7134	0.83	-0.5
3,155	-	GFF7134	0.83	+0.4
3,155	-	GFF7134	0.83	-0.1
3,155	-	GFF7134	0.83	+0.5
3,155	-	GFF7134	0.83	+0.2
3,155	-	GFF7134	0.83	-1.1
3,155	-	GFF7134	0.83	+0.3
3,155	-	GFF7134	0.83	-0.6
3,155	-	GFF7134	0.83	-0.9
3,155	-	GFF7134	0.83	-1.3
3,155	-	GFF7134	0.83	-0.2
3,155	-	GFF7134	0.83	-0.6
3,155	-	GFF7134	0.83	+0.5
3,184	+	GFF7134	0.85	+1.5
3,184	+	GFF7134	0.85	-0.3
3,184	+	GFF7134	0.85	-0.4
3,184	+	GFF7134	0.85	-0.8
3,184	+	GFF7134	0.85	-1.5
3,185	-	GFF7134	0.86	-0.3
3,185	-	GFF7134	0.86	-1.7
3,185	-	GFF7134	0.86	-0.2
3,185	-	GFF7134	0.86	-1.8
3,185	-	GFF7134	0.86	-0.5
3,185	-	GFF7134	0.86	-0.4
3,185	-	GFF7134	0.86	-1.6
3,185	-	GFF7134	0.86	-1.6
3,208	+	GFF7134	0.87	+0.1
3,208	+	GFF7134	0.87	+0.1
3,208	+	GFF7134	0.87	-0.2
3,208	+	GFF7134	0.87	-0.4
3,209	-	GFF7134	0.87	+3.5
3,209	-	GFF7134	0.87	-0.0
3,209	-	GFF7134	0.87	+0.4
3,375	+			+0.0
3,375	+			-0.2
3,375	+			+0.4
3,376	-			+0.7
3,376	-			-0.4
3,376	-			-0.4
3,376	-			-0.1
3,376	-			-0.2
3,376	-			+0.4
3,376	-			-1.4
3,376	-			+0.9
3,376	-			-0.6
3,376	-			+2.3
3,440	+			-1.0
3,440	+			+0.1
3,441	-			+1.9
3,441	-			-0.2
3,441	-			-1.5
3,676	+	GFF7135	0.16	-0.5
3,676	+	GFF7135	0.16	-1.5
3,676	+	GFF7135	0.16	-0.7
3,676	+	GFF7135	0.16	-0.9
3,676	+	GFF7135	0.16	-0.6
3,676	+	GFF7135	0.16	+0.3
3,676	+	GFF7135	0.16	-0.2
3,676	+	GFF7135	0.16	+0.1
3,676	+	GFF7135	0.16	-0.9
3,676	+	GFF7135	0.16	+1.3
3,676	+	GFF7135	0.16	+0.4
3,676	+	GFF7135	0.16	-1.5
3,676	+	GFF7135	0.16	-0.6
3,676	+	GFF7135	0.16	-0.6
3,677	-	GFF7135	0.16	+0.3
3,677	-	GFF7135	0.16	-1.0
3,677	-	GFF7135	0.16	+0.5
3,677	-	GFF7135	0.16	-0.4
3,677	-	GFF7135	0.16	-0.9
3,677	-	GFF7135	0.16	+0.1
3,677	-	GFF7135	0.16	-0.1
3,677	-	GFF7135	0.16	+0.0
3,677	-	GFF7135	0.16	+0.9
3,677	-	GFF7135	0.16	-0.7
3,677	-	GFF7135	0.16	+0.2
3,677	-	GFF7135	0.16	+0.8
3,677	-	GFF7135	0.16	-0.0
3,677	-	GFF7135	0.16	+0.3
3,677	-	GFF7135	0.16	+0.9
3,677	-	GFF7135	0.16	+0.5
4,003	+	GFF7135	0.42	+0.5
4,003	+	GFF7135	0.42	+0.7
4,003	+	GFF7135	0.42	-1.1
4,003	+	GFF7135	0.42	-0.5
4,003	+	GFF7135	0.42	-0.8
4,003	+	GFF7135	0.42	+0.1
4,003	+	GFF7135	0.42	+0.5
4,003	+	GFF7135	0.42	+0.9
4,003	+	GFF7135	0.42	-0.9
4,003	+	GFF7135	0.42	-0.1
4,003	+	GFF7135	0.42	+0.1
4,003	+	GFF7135	0.42	-0.8
4,003	+	GFF7135	0.42	-0.3
4,003	+	GFF7135	0.42	+1.5
4,003	+	GFF7135	0.42	+1.0
4,004	-	GFF7135	0.42	-0.5
4,004	-	GFF7135	0.42	-0.5
4,004	-	GFF7135	0.42	-0.2
4,004	-	GFF7135	0.42	-0.8
4,004	-	GFF7135	0.42	+0.3
4,004	-	GFF7135	0.42	-0.5
4,004	-	GFF7135	0.42	+0.2
4,004	-	GFF7135	0.42	-0.7
4,004	-	GFF7135	0.42	+1.0
4,004	-	GFF7135	0.42	-0.1
4,004	-	GFF7135	0.42	-1.3
4,004	-	GFF7135	0.42	-0.5
4,004	-	GFF7135	0.42	+0.3
4,004	-	GFF7135	0.42	-1.1
4,186	+	GFF7135	0.57	-0.2
4,186	+	GFF7135	0.57	-0.4
4,186	+	GFF7135	0.57	+1.3
4,186	+	GFF7135	0.57	-0.6
4,186	+	GFF7135	0.57	-0.4
4,186	+	GFF7135	0.57	+0.9
4,186	+	GFF7135	0.57	-0.7
4,186	+	GFF7135	0.57	-0.1
4,186	+	GFF7135	0.57	-1.5
4,186	+	GFF7135	0.57	+0.4
4,186	+	GFF7135	0.57	-0.2
4,186	+	GFF7135	0.57	-0.3
4,186	+	GFF7135	0.57	-0.0
4,186	+	GFF7135	0.57	+0.2
4,186	+	GFF7135	0.57	-0.7
4,186	+	GFF7135	0.57	+0.4
4,187	-	GFF7135	0.57	+1.0
4,187	-	GFF7135	0.57	+0.1
4,187	-	GFF7135	0.57	-0.2
4,187	-	GFF7135	0.57	-3.2
4,187	-	GFF7135	0.57	+0.0
4,187	-	GFF7135	0.57	-1.8
4,187	-	GFF7135	0.57	-0.5
4,187	-	GFF7135	0.57	-1.0
4,187	-	GFF7135	0.57	-0.1
4,187	-	GFF7135	0.57	+0.9
4,187	-	GFF7135	0.57	-0.1
4,187	-	GFF7135	0.57	-1.1
4,187	-	GFF7135	0.57	-0.1
4,187	-	GFF7135	0.57	-2.0
4,187	-	GFF7135	0.57	+0.3
4,187	-	GFF7135	0.57	+0.0
4,192	+	GFF7135	0.57	-0.9
4,192	+	GFF7135	0.57	-0.7
4,192	+	GFF7135	0.57	+0.8
4,192	+	GFF7135	0.57	+0.3
4,192	+	GFF7135	0.57	-0.7
4,192	+	GFF7135	0.57	+0.5
4,192	+	GFF7135	0.57	+0.2
4,192	+	GFF7135	0.57	-1.4
4,192	+	GFF7135	0.57	+0.2
4,192	+	GFF7135	0.57	+1.1
4,192	+	GFF7135	0.57	-1.8
4,192	+	GFF7135	0.57	+0.3
4,192	+	GFF7135	0.57	+0.9
4,192	+	GFF7135	0.57	-0.6
4,192	+	GFF7135	0.57	-0.8
4,192	+	GFF7135	0.57	-1.9
4,192	+	GFF7135	0.57	+0.3
4,192	+	GFF7135	0.57	+0.2
4,193	-	GFF7135	0.57	-0.1
4,193	-	GFF7135	0.57	+0.3
4,193	-	GFF7135	0.57	-0.1
4,193	-	GFF7135	0.57	-1.0
4,193	-	GFF7135	0.57	-0.3
4,193	-	GFF7135	0.57	-0.3
4,193	-	GFF7135	0.57	-0.4
4,193	-	GFF7135	0.57	-0.9
4,193	-	GFF7135	0.57	+1.1
4,193	-	GFF7135	0.57	-0.3
4,193	-	GFF7135	0.57	-1.0
4,193	-	GFF7135	0.57	+0.8
4,193	-	GFF7135	0.57	+0.1
4,193	-	GFF7135	0.57	+1.9
4,193	-	GFF7135	0.57	+0.3
4,193	-	GFF7135	0.57	+0.9
4,193	-	GFF7135	0.57	-0.9
4,193	-	GFF7135	0.57	+0.3

Or see this region's nucleotide sequence