Strain Fitness in Variovorax sp. SCN45 around GFF7122

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7121 and GFF7122 are separated by 176 nucleotidesGFF7122 and GFF7123 are separated by 16 nucleotides GFF7121 - CDP-6-deoxy-delta-3,4-glucoseen reductase-like, at 38,922 to 39,911 GFF7121 GFF7122 - no description, at 40,088 to 40,999 GFF7122 GFF7123 - BUG/TctC family periplasmic protein, at 41,016 to 42,008 GFF7123 Position (kb) 40 41Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 39.190 kb on + strand, within GFF7121at 39.190 kb on + strand, within GFF7121at 39.190 kb on + strand, within GFF7121at 39.191 kb on - strand, within GFF7121at 39.221 kb on - strand, within GFF7121at 39.221 kb on - strand, within GFF7121at 39.221 kb on - strand, within GFF7121at 39.221 kb on - strand, within GFF7121at 39.221 kb on - strand, within GFF7121at 39.340 kb on + strand, within GFF7121at 39.340 kb on + strand, within GFF7121at 39.340 kb on + strand, within GFF7121at 39.523 kb on + strand, within GFF7121at 39.523 kb on + strand, within GFF7121at 39.523 kb on + strand, within GFF7121at 39.523 kb on + strand, within GFF7121at 39.523 kb on + strand, within GFF7121at 39.523 kb on + strand, within GFF7121at 39.524 kb on - strand, within GFF7121at 39.524 kb on - strand, within GFF7121at 39.524 kb on - strand, within GFF7121at 39.524 kb on - strand, within GFF7121at 39.524 kb on - strand, within GFF7121at 39.524 kb on - strand, within GFF7121at 39.567 kb on + strand, within GFF7121at 39.567 kb on + strand, within GFF7121at 39.567 kb on + strand, within GFF7121at 39.567 kb on + strand, within GFF7121at 39.568 kb on - strand, within GFF7121at 39.568 kb on - strand, within GFF7121at 39.568 kb on - strand, within GFF7121at 39.568 kb on - strand, within GFF7121at 39.568 kb on - strand, within GFF7121at 39.568 kb on - strand, within GFF7121at 39.799 kb on + strand, within GFF7121at 39.800 kb on - strand, within GFF7121at 39.933 kb on + strandat 39.933 kb on + strandat 39.933 kb on + strandat 39.933 kb on + strandat 39.933 kb on + strandat 39.933 kb on + strandat 39.934 kb on - strandat 39.934 kb on - strandat 39.934 kb on - strandat 39.934 kb on - strandat 39.934 kb on - strandat 39.934 kb on - strandat 39.934 kb on - strandat 39.963 kb on + strandat 39.963 kb on + strandat 39.963 kb on + strandat 39.963 kb on + strandat 39.963 kb on + strandat 39.963 kb on + strandat 39.964 kb on - strandat 39.964 kb on - strandat 39.964 kb on - strandat 39.964 kb on - strandat 39.964 kb on - strandat 39.964 kb on - strandat 39.964 kb on - strandat 39.967 kb on + strandat 40.022 kb on - strandat 40.046 kb on + strandat 40.046 kb on + strandat 40.046 kb on + strandat 40.046 kb on + strandat 40.046 kb on + strandat 40.047 kb on - strandat 40.047 kb on - strandat 40.047 kb on - strandat 40.047 kb on - strandat 40.195 kb on - strand, within GFF7122at 40.277 kb on + strand, within GFF7122at 40.340 kb on + strand, within GFF7122at 40.361 kb on + strand, within GFF7122at 40.362 kb on - strand, within GFF7122at 40.362 kb on - strand, within GFF7122at 40.362 kb on - strand, within GFF7122at 40.362 kb on - strand, within GFF7122at 40.388 kb on - strand, within GFF7122at 40.517 kb on + strand, within GFF7122at 40.517 kb on + strand, within GFF7122at 40.517 kb on + strand, within GFF7122at 40.517 kb on + strand, within GFF7122at 40.517 kb on + strand, within GFF7122at 40.518 kb on - strand, within GFF7122at 40.518 kb on - strand, within GFF7122at 40.518 kb on - strand, within GFF7122at 40.518 kb on - strand, within GFF7122at 40.518 kb on - strand, within GFF7122at 40.518 kb on - strand, within GFF7122at 40.518 kb on - strand, within GFF7122at 40.700 kb on + strand, within GFF7122at 40.700 kb on + strand, within GFF7122at 40.700 kb on + strand, within GFF7122at 40.700 kb on + strand, within GFF7122at 40.701 kb on - strand, within GFF7122at 40.998 kb on - strandat 41.113 kb on - strandat 41.113 kb on - strandat 41.141 kb on + strand, within GFF7123at 41.141 kb on + strand, within GFF7123at 41.141 kb on + strand, within GFF7123at 41.141 kb on + strand, within GFF7123at 41.141 kb on + strand, within GFF7123at 41.141 kb on + strand, within GFF7123at 41.141 kb on + strand, within GFF7123at 41.142 kb on - strand, within GFF7123at 41.142 kb on - strand, within GFF7123at 41.142 kb on - strand, within GFF7123at 41.142 kb on - strand, within GFF7123at 41.145 kb on + strand, within GFF7123at 41.145 kb on + strand, within GFF7123at 41.145 kb on + strand, within GFF7123at 41.145 kb on + strand, within GFF7123at 41.145 kb on + strand, within GFF7123at 41.146 kb on - strand, within GFF7123at 41.146 kb on - strand, within GFF7123at 41.146 kb on - strand, within GFF7123at 41.146 kb on - strand, within GFF7123at 41.146 kb on - strand, within GFF7123at 41.146 kb on - strand, within GFF7123at 41.184 kb on + strand, within GFF7123at 41.184 kb on + strand, within GFF7123at 41.184 kb on + strand, within GFF7123at 41.184 kb on + strand, within GFF7123at 41.184 kb on + strand, within GFF7123at 41.184 kb on + strand, within GFF7123at 41.185 kb on - strand, within GFF7123at 41.185 kb on - strand, within GFF7123at 41.185 kb on - strand, within GFF7123at 41.185 kb on - strand, within GFF7123at 41.261 kb on + strand, within GFF7123at 41.262 kb on - strand, within GFF7123at 41.295 kb on + strand, within GFF7123at 41.349 kb on - strand, within GFF7123at 41.361 kb on + strand, within GFF7123at 41.361 kb on + strand, within GFF7123at 41.361 kb on + strand, within GFF7123at 41.361 kb on + strand, within GFF7123at 41.361 kb on + strand, within GFF7123at 41.361 kb on + strand, within GFF7123at 41.362 kb on - strand, within GFF7123at 41.362 kb on - strand, within GFF7123at 41.362 kb on - strand, within GFF7123at 41.362 kb on - strand, within GFF7123at 41.362 kb on - strand, within GFF7123at 41.469 kb on + strand, within GFF7123at 41.586 kb on + strand, within GFF7123at 41.586 kb on + strand, within GFF7123at 41.586 kb on + strand, within GFF7123at 41.586 kb on + strand, within GFF7123at 41.587 kb on - strand, within GFF7123at 41.587 kb on - strand, within GFF7123at 41.587 kb on - strand, within GFF7123at 41.740 kb on + strand, within GFF7123at 41.740 kb on + strand, within GFF7123at 41.741 kb on - strand, within GFF7123at 41.741 kb on - strand, within GFF7123at 41.741 kb on - strand, within GFF7123at 41.741 kb on - strand, within GFF7123

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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39,190 + GFF7121 0.27 +1.1
39,190 + GFF7121 0.27 +0.5
39,190 + GFF7121 0.27 -0.1
39,191 - GFF7121 0.27 -1.1
39,221 - GFF7121 0.30 +0.1
39,221 - GFF7121 0.30 -0.3
39,221 - GFF7121 0.30 +0.3
39,221 - GFF7121 0.30 -0.4
39,221 - GFF7121 0.30 +1.2
39,340 + GFF7121 0.42 +0.5
39,340 + GFF7121 0.42 +0.4
39,340 + GFF7121 0.42 -1.0
39,523 + GFF7121 0.61 -0.0
39,523 + GFF7121 0.61 -0.7
39,523 + GFF7121 0.61 -0.1
39,523 + GFF7121 0.61 +0.2
39,523 + GFF7121 0.61 -0.5
39,523 + GFF7121 0.61 +0.6
39,524 - GFF7121 0.61 +0.9
39,524 - GFF7121 0.61 +0.9
39,524 - GFF7121 0.61 +2.3
39,524 - GFF7121 0.61 +0.2
39,524 - GFF7121 0.61 -0.9
39,524 - GFF7121 0.61 -1.0
39,567 + GFF7121 0.65 -2.0
39,567 + GFF7121 0.65 +0.4
39,567 + GFF7121 0.65 -0.2
39,567 + GFF7121 0.65 +0.7
39,568 - GFF7121 0.65 -0.4
39,568 - GFF7121 0.65 +0.4
39,568 - GFF7121 0.65 +1.9
39,568 - GFF7121 0.65 -0.9
39,568 - GFF7121 0.65 -0.6
39,568 - GFF7121 0.65 +1.9
39,799 + GFF7121 0.89 +0.9
39,800 - GFF7121 0.89 +0.0
39,933 + -0.9
39,933 + -0.3
39,933 + +0.8
39,933 + -0.7
39,933 + -0.3
39,933 + -0.0
39,934 - +1.0
39,934 - +0.5
39,934 - -2.0
39,934 - -0.7
39,934 - -3.0
39,934 - +0.3
39,934 - +1.3
39,963 + -0.8
39,963 + -0.1
39,963 + -0.6
39,963 + +0.3
39,963 + +0.1
39,963 + -0.6
39,964 - -0.4
39,964 - +2.5
39,964 - -0.2
39,964 - +0.3
39,964 - -0.6
39,964 - -0.3
39,964 - +0.2
39,967 + -0.2
40,022 - -0.6
40,046 + -0.6
40,046 + +0.1
40,046 + +0.1
40,046 + +0.9
40,046 + +0.0
40,047 - +0.2
40,047 - +0.3
40,047 - +1.1
40,047 - -0.3
40,195 - GFF7122 0.12 -0.3
40,277 + GFF7122 0.21 -0.4
40,340 + GFF7122 0.28 -1.2
40,361 + GFF7122 0.30 +0.1
40,362 - GFF7122 0.30 -1.6
40,362 - GFF7122 0.30 -0.8
40,362 - GFF7122 0.30 -0.2
40,362 - GFF7122 0.30 -0.8
40,388 - GFF7122 0.33 -0.9
40,517 + GFF7122 0.47 -0.9
40,517 + GFF7122 0.47 -0.4
40,517 + GFF7122 0.47 -0.2
40,517 + GFF7122 0.47 +0.2
40,517 + GFF7122 0.47 -1.0
40,518 - GFF7122 0.47 -0.6
40,518 - GFF7122 0.47 -0.6
40,518 - GFF7122 0.47 +0.6
40,518 - GFF7122 0.47 -2.5
40,518 - GFF7122 0.47 -0.9
40,518 - GFF7122 0.47 -1.0
40,518 - GFF7122 0.47 -0.3
40,700 + GFF7122 0.67 -0.3
40,700 + GFF7122 0.67 +0.4
40,700 + GFF7122 0.67 +1.1
40,700 + GFF7122 0.67 +2.2
40,701 - GFF7122 0.67 -0.2
40,998 - -0.4
41,113 - +0.5
41,113 - +0.1
41,141 + GFF7123 0.13 +0.2
41,141 + GFF7123 0.13 -0.8
41,141 + GFF7123 0.13 -0.7
41,141 + GFF7123 0.13 -1.6
41,141 + GFF7123 0.13 +0.2
41,141 + GFF7123 0.13 -0.4
41,141 + GFF7123 0.13 +0.0
41,142 - GFF7123 0.13 -0.4
41,142 - GFF7123 0.13 -1.8
41,142 - GFF7123 0.13 +0.0
41,142 - GFF7123 0.13 +0.3
41,145 + GFF7123 0.13 +0.5
41,145 + GFF7123 0.13 -0.1
41,145 + GFF7123 0.13 -0.0
41,145 + GFF7123 0.13 -0.9
41,145 + GFF7123 0.13 -0.6
41,146 - GFF7123 0.13 +0.9
41,146 - GFF7123 0.13 +0.2
41,146 - GFF7123 0.13 +0.8
41,146 - GFF7123 0.13 +1.0
41,146 - GFF7123 0.13 -1.1
41,146 - GFF7123 0.13 -0.3
41,184 + GFF7123 0.17 -0.1
41,184 + GFF7123 0.17 +0.0
41,184 + GFF7123 0.17 -2.4
41,184 + GFF7123 0.17 +0.8
41,184 + GFF7123 0.17 +0.8
41,184 + GFF7123 0.17 -0.1
41,185 - GFF7123 0.17 -1.7
41,185 - GFF7123 0.17 +0.1
41,185 - GFF7123 0.17 -0.4
41,185 - GFF7123 0.17 +1.4
41,261 + GFF7123 0.25 +0.2
41,262 - GFF7123 0.25 +0.7
41,295 + GFF7123 0.28 -0.1
41,349 - GFF7123 0.34 -0.1
41,361 + GFF7123 0.35 +0.5
41,361 + GFF7123 0.35 -0.6
41,361 + GFF7123 0.35 +0.2
41,361 + GFF7123 0.35 -0.4
41,361 + GFF7123 0.35 -1.5
41,361 + GFF7123 0.35 -2.4
41,362 - GFF7123 0.35 +1.1
41,362 - GFF7123 0.35 +0.3
41,362 - GFF7123 0.35 -0.2
41,362 - GFF7123 0.35 -0.2
41,362 - GFF7123 0.35 -0.6
41,469 + GFF7123 0.46 +0.6
41,586 + GFF7123 0.57 +0.3
41,586 + GFF7123 0.57 +0.3
41,586 + GFF7123 0.57 -1.6
41,586 + GFF7123 0.57 +0.5
41,587 - GFF7123 0.58 +0.6
41,587 - GFF7123 0.58 -0.6
41,587 - GFF7123 0.58 -0.3
41,740 + GFF7123 0.73 -0.9
41,740 + GFF7123 0.73 +1.4
41,741 - GFF7123 0.73 +0.9
41,741 - GFF7123 0.73 -0.1
41,741 - GFF7123 0.73 -0.9
41,741 - GFF7123 0.73 +0.6

Or see this region's nucleotide sequence