Strain Fitness in Variovorax sp. SCN45 around GFF7113

Experiment: M9 with Supernatant from Cyptococcus

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus
30,768	+		GFF7112	0.43	-0.8
30,768	+		GFF7112	0.43	-0.6
30,770	-		GFF7112	0.43	+0.7
30,843	+		GFF7112	0.48	-0.4
30,843	+		GFF7112	0.48	+1.5
30,843	+		GFF7112	0.48	+1.3
30,843	+		GFF7112	0.48	-0.2
30,843	+		GFF7112	0.48	-0.2
30,843	+		GFF7112	0.48	+0.1
30,843	+		GFF7112	0.48	+0.0
30,843	+		GFF7112	0.48	+0.1
30,843	+		GFF7112	0.48	+0.6
30,843	+		GFF7112	0.48	-0.9
30,843	+		GFF7112	0.48	-0.0
30,843	+		GFF7112	0.48	+0.9
30,843	+		GFF7112	0.48	+0.2
30,843	+		GFF7112	0.48	+0.4
30,843	+		GFF7112	0.48	+1.1
30,843	+		GFF7112	0.48	+1.2
30,843	+		GFF7112	0.48	+0.6
30,843	+		GFF7112	0.48	+0.5
30,844	-		GFF7112	0.48	-1.3
30,844	-		GFF7112	0.48	-0.1
30,844	-		GFF7112	0.48	-0.6
30,844	-		GFF7112	0.48	-0.4
30,844	-		GFF7112	0.48	+0.2
30,844	-		GFF7112	0.48	-0.7
30,844	-		GFF7112	0.48	-0.4
30,844	-		GFF7112	0.48	-1.2
30,844	-		GFF7112	0.48	+0.4
30,844	-		GFF7112	0.48	+0.2
30,844	-		GFF7112	0.48	-0.3
30,844	-		GFF7112	0.48	-0.2
30,844	-		GFF7112	0.48	-0.7
30,844	-		GFF7112	0.48	-0.1
30,844	-		GFF7112	0.48	+0.6
30,844	-		GFF7112	0.48	+0.1
30,844	-		GFF7112	0.48	-0.1
31,071	+		GFF7112	0.62	-1.9
31,071	+		GFF7112	0.62	-1.1
31,072	-		GFF7112	0.62	-2.2
31,185	+		GFF7112	0.69	-0.9
31,185	+		GFF7112	0.69	+0.7
31,185	+		GFF7112	0.69	-1.8
31,185	+		GFF7112	0.69	-0.7
31,185	+		GFF7112	0.69	+0.1
31,185	+		GFF7112	0.69	+0.6
31,185	+		GFF7112	0.69	-0.8
31,185	+		GFF7112	0.69	-0.8
31,185	+		GFF7112	0.69	+0.4
31,185	+		GFF7112	0.69	+0.1
31,186	-		GFF7112	0.69	-0.3
31,186	-		GFF7112	0.69	+0.4
31,186	-		GFF7112	0.69	+1.4
31,186	-		GFF7112	0.69	+0.5
31,186	-		GFF7112	0.69	-0.0
31,186	-		GFF7112	0.69	+0.3
31,260	+		GFF7112	0.74	-1.5
31,260	+		GFF7112	0.74	-1.6
31,260	+		GFF7112	0.74	-0.8
31,260	+		GFF7112	0.74	+0.3
31,261	-		GFF7112	0.74	-0.3
31,261	-		GFF7112	0.74	+0.3
31,290	+		GFF7112	0.76	+1.3
31,290	+		GFF7112	0.76	+0.4
31,291	-		GFF7112	0.76	+0.4
31,291	-		GFF7112	0.76	+0.3
31,291	-		GFF7112	0.76	-1.2
31,291	-		GFF7112	0.76	+0.9
31,291	-		GFF7112	0.76	-0.1
31,471	-		GFF7112	0.87	-0.4
31,471	-		GFF7112	0.87	+1.1
31,471	-		GFF7112	0.87	+1.6
31,471	-		GFF7112	0.87	+0.8
31,471	-		GFF7112	0.87	-1.0
31,479	+		GFF7112	0.88	+0.4
31,479	+		GFF7112	0.88	+1.2
31,479	+		GFF7112	0.88	-0.4
31,479	+		GFF7112	0.88	+1.6
31,479	+		GFF7112	0.88	-1.1
31,479	+		GFF7112	0.88	+0.1
31,479	+		GFF7112	0.88	+0.4
31,480	-		GFF7112	0.88	-2.4
31,480	-		GFF7112	0.88	-0.2
31,480	-		GFF7112	0.88	+0.3
31,480	-		GFF7112	0.88	+0.9
31,632	+				-1.6
31,632	+				+0.3
31,632	+				-0.4
31,633	-				+0.6
31,644	-				-0.5
31,751	+		GFF7113	0.11	-2.2
31,751	+		GFF7113	0.11	-0.6
31,751	+		GFF7113	0.11	-0.6
31,751	+		GFF7113	0.11	-0.1
31,751	+		GFF7113	0.11	-0.0
31,751	+		GFF7113	0.11	-0.1
31,751	+		GFF7113	0.11	-0.7
31,751	+		GFF7113	0.11	+0.3
31,751	+		GFF7113	0.11	-0.9
31,751	+		GFF7113	0.11	+0.5
31,752	-		GFF7113	0.12	+0.4
31,752	-		GFF7113	0.12	+1.2
31,752	-		GFF7113	0.12	-0.7
31,752	-		GFF7113	0.12	-0.1
31,752	-		GFF7113	0.12	-0.0
31,752	-		GFF7113	0.12	-0.4
31,752	-		GFF7113	0.12	-0.7
31,793	+		GFF7113	0.19	+1.3
31,799	+		GFF7113	0.20	-0.1
31,800	-		GFF7113	0.21	-0.5
31,800	-		GFF7113	0.21	-0.9
31,850	+		GFF7113	0.30	+1.2
31,850	+		GFF7113	0.30	-0.8
31,850	+		GFF7113	0.30	-0.7
31,850	+		GFF7113	0.30	+1.2
31,850	+		GFF7113	0.30	+0.1
31,850	+		GFF7113	0.30	-0.8
31,850	+		GFF7113	0.30	-0.3
31,850	+		GFF7113	0.30	-2.1
31,851	-		GFF7113	0.30	-1.5
31,851	-		GFF7113	0.30	-1.1
31,851	-		GFF7113	0.30	+0.1
31,851	-		GFF7113	0.30	-0.6
31,851	-		GFF7113	0.30	-1.1
31,851	-		GFF7113	0.30	-1.4
31,851	-		GFF7113	0.30	-0.4
31,868	+		GFF7113	0.33	-0.8
31,868	+		GFF7113	0.33	+0.0
31,869	-		GFF7113	0.34	-0.3
32,066	+		GFF7113	0.70	+1.9
32,067	-		GFF7113	0.71	+0.3
32,067	-		GFF7113	0.71	-1.3
32,190	+				+0.2
32,242	+				+0.2
32,242	+				-0.7
32,632	+		GFF7114	0.32	+0.6
32,632	+		GFF7114	0.32	-0.1
32,632	+		GFF7114	0.32	-0.4
32,656	+		GFF7114	0.34	-0.4
32,656	+		GFF7114	0.34	-0.6
32,656	+		GFF7114	0.34	+0.3
32,656	+		GFF7114	0.34	-0.6
32,656	+		GFF7114	0.34	+1.9
32,656	+		GFF7114	0.34	+1.2
32,656	+		GFF7114	0.34	+0.3
32,656	+		GFF7114	0.34	-0.2
32,656	+		GFF7114	0.34	-1.2
32,656	+		GFF7114	0.34	+0.2
32,657	-		GFF7114	0.34	-0.2
32,657	-		GFF7114	0.34	-0.4
32,657	-		GFF7114	0.34	+0.7
32,657	-		GFF7114	0.34	-0.0
32,657	-		GFF7114	0.34	+1.4
32,657	-		GFF7114	0.34	-0.0
32,657	-		GFF7114	0.34	-0.1
32,657	-		GFF7114	0.34	-0.3
32,707	+		GFF7114	0.38	+1.0
32,707	+		GFF7114	0.38	-0.7
32,707	+		GFF7114	0.38	-1.6
32,707	+		GFF7114	0.38	-0.2
32,707	+		GFF7114	0.38	-0.5
32,707	+		GFF7114	0.38	-0.6
32,707	+		GFF7114	0.38	+0.2
32,707	+		GFF7114	0.38	-0.1
32,707	+		GFF7114	0.38	-1.6
32,708	-		GFF7114	0.38	-1.0
32,708	-		GFF7114	0.38	+1.1
32,708	-		GFF7114	0.38	+0.3
32,708	-		GFF7114	0.38	-0.8
32,708	-		GFF7114	0.38	-0.5
32,708	-		GFF7114	0.38	-0.5
32,708	-		GFF7114	0.38	-1.1
32,708	-		GFF7114	0.38	-0.4
32,708	-		GFF7114	0.38	-1.3
32,797	+		GFF7114	0.45	+0.2
32,798	-		GFF7114	0.45	+0.3
32,798	-		GFF7114	0.45	-1.8
32,807	+		GFF7114	0.45	-0.8
32,808	-		GFF7114	0.45	+0.9
32,808	-		GFF7114	0.45	-1.0
32,808	-		GFF7114	0.45	+0.1
32,855	-		GFF7114	0.49	-0.8
32,967	+		GFF7114	0.58	+0.2
32,967	+		GFF7114	0.58	-0.8
32,968	-		GFF7114	0.58	-0.8
32,968	-		GFF7114	0.58	+0.7
32,968	-		GFF7114	0.58	-0.6
32,968	-		GFF7114	0.58	-0.1
32,968	-		GFF7114	0.58	+1.5
33,160	+		GFF7114	0.73	+0.3
33,160	+		GFF7114	0.73	-0.3
33,161	-		GFF7114	0.73	-0.0
33,161	-		GFF7114	0.73	-1.8
33,161	-		GFF7114	0.73	-0.1
33,161	-		GFF7114	0.73	-0.5
33,161	-		GFF7114	0.73	-1.0