Strain Fitness in Variovorax sp. SCN45 around GFF7088

Experiment: M9 with Supernatant from Cyptococcus

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus
9,742	+		GFF7087	0.19	-1.7
9,742	+		GFF7087	0.19	-1.0
9,742	+		GFF7087	0.19	-0.3
9,742	+		GFF7087	0.19	+0.5
9,743	-		GFF7087	0.19	-0.7
9,743	-		GFF7087	0.19	+0.2
9,743	-		GFF7087	0.19	-0.4
9,743	-		GFF7087	0.19	-0.9
9,743	-		GFF7087	0.19	-1.0
9,756	+		GFF7087	0.21	-0.6
9,756	+		GFF7087	0.21	-1.8
9,756	+		GFF7087	0.21	-0.5
9,756	+		GFF7087	0.21	-0.8
9,756	+		GFF7087	0.21	-0.2
9,757	-		GFF7087	0.21	+0.6
9,757	-		GFF7087	0.21	+0.2
9,757	-		GFF7087	0.21	-0.1
9,757	-		GFF7087	0.21	-1.3
9,802	+		GFF7087	0.25	+0.5
9,802	+		GFF7087	0.25	-1.6
9,803	-		GFF7087	0.25	-0.7
9,853	-		GFF7087	0.30	-1.6
9,853	-		GFF7087	0.30	-0.4
9,853	-		GFF7087	0.30	-1.0
9,853	-		GFF7087	0.30	-0.4
9,987	+		GFF7087	0.43	+0.2
9,987	+		GFF7087	0.43	-0.2
9,987	+		GFF7087	0.43	+1.9
9,987	+		GFF7087	0.43	+2.3
9,987	+		GFF7087	0.43	-0.4
9,988	-		GFF7087	0.43	+0.1
9,988	-		GFF7087	0.43	-0.0
9,988	-		GFF7087	0.43	-0.3
9,988	-		GFF7087	0.43	-0.0
10,004	+		GFF7087	0.45	-1.1
10,005	-		GFF7087	0.45	+0.0
10,029	+		GFF7087	0.47	+0.6
10,030	-		GFF7087	0.48	-0.8
10,030	-		GFF7087	0.48	-0.0
10,030	-		GFF7087	0.48	+0.8
10,030	-		GFF7087	0.48	-0.1
10,030	-		GFF7087	0.48	-0.7
10,331	+		GFF7087	0.77	-0.7
10,331	+		GFF7087	0.77	+1.2
10,331	+		GFF7087	0.77	-0.6
10,331	+		GFF7087	0.77	+0.1
10,331	+		GFF7087	0.77	-0.9
10,331	+		GFF7087	0.77	-0.3
10,332	-		GFF7087	0.77	+0.2
10,332	-		GFF7087	0.77	-1.0
10,332	-		GFF7087	0.77	-0.2
10,332	-		GFF7087	0.77	-0.9
10,332	-		GFF7087	0.77	-0.6
10,431	-		GFF7087	0.87	+0.5
10,464	+				+2.1
10,465	-				+0.6
10,465	-				+0.7
10,484	+				-1.7
10,485	-				-1.6
10,556	+				+0.6
10,557	-				-0.3
10,573	+				+1.4
10,573	+				-0.3
10,574	-				-0.3
10,574	-				-0.3
10,574	-				-0.5
10,616	+				-2.5
10,617	-				-1.4
10,617	-				-0.3
10,763	+		GFF7088	0.13	-0.4
10,763	+		GFF7088	0.13	+0.3
10,763	+		GFF7088	0.13	-0.5
10,763	+		GFF7088	0.13	-1.8
10,763	+		GFF7088	0.13	-0.1
10,763	+		GFF7088	0.13	+0.7
10,763	+		GFF7088	0.13	+0.1
10,764	-		GFF7088	0.13	-0.0
10,764	-		GFF7088	0.13	+0.6
10,764	-		GFF7088	0.13	+0.0
10,764	-		GFF7088	0.13	+0.4
10,764	-		GFF7088	0.13	+1.1
10,764	-		GFF7088	0.13	-0.7
10,764	-		GFF7088	0.13	-0.2
10,764	-		GFF7088	0.13	+0.3
10,874	+		GFF7088	0.21	+0.8
10,874	+		GFF7088	0.21	+0.1
10,875	-		GFF7088	0.21	-0.0
10,900	+		GFF7088	0.23	-0.0
10,900	+		GFF7088	0.23	-0.2
10,900	+		GFF7088	0.23	+1.3
10,900	+		GFF7088	0.23	-0.4
10,900	+		GFF7088	0.23	-0.1
10,901	-		GFF7088	0.23	-0.8
10,901	-		GFF7088	0.23	-0.1
10,901	-		GFF7088	0.23	+0.8
10,901	-		GFF7088	0.23	-0.4
10,901	-		GFF7088	0.23	-1.5
10,901	-		GFF7088	0.23	+0.1
10,901	-		GFF7088	0.23	-0.4
10,901	-		GFF7088	0.23	-0.5
10,901	-		GFF7088	0.23	+0.4
10,910	+		GFF7088	0.23	-0.6
10,911	-		GFF7088	0.24	+2.3
10,925	+		GFF7088	0.25	-0.3
10,925	+		GFF7088	0.25	+0.1
10,926	-		GFF7088	0.25	+0.1
10,926	-		GFF7088	0.25	-0.5
10,926	-		GFF7088	0.25	+0.2
10,926	-		GFF7088	0.25	+0.6
10,926	-		GFF7088	0.25	-0.1
10,973	+		GFF7088	0.28	-0.3
10,973	+		GFF7088	0.28	-0.2
10,973	+		GFF7088	0.28	-0.3
10,974	-		GFF7088	0.28	+0.3
10,984	+		GFF7088	0.29	-0.6
10,984	+		GFF7088	0.29	-0.5
10,984	+		GFF7088	0.29	-1.4
10,985	-		GFF7088	0.29	-0.3
10,985	-		GFF7088	0.29	-1.0
11,033	+		GFF7088	0.32	+0.0
11,033	+		GFF7088	0.32	-0.5
11,033	+		GFF7088	0.32	-1.0
11,033	+		GFF7088	0.32	+0.3
11,033	+		GFF7088	0.32	-0.8
11,034	-		GFF7088	0.33	-0.4
11,034	-		GFF7088	0.33	-0.4
11,034	-		GFF7088	0.33	-1.1
11,034	-		GFF7088	0.33	+0.6
11,079	+		GFF7088	0.36	-0.3
11,080	-		GFF7088	0.36	-1.6
11,080	-		GFF7088	0.36	+0.1
11,087	+		GFF7088	0.36	-0.9
11,087	+		GFF7088	0.36	+1.2
11,087	+		GFF7088	0.36	+0.2
11,087	+		GFF7088	0.36	-0.6
11,088	-		GFF7088	0.36	-0.3
11,088	-		GFF7088	0.36	-2.7
11,088	-		GFF7088	0.36	-0.9
11,088	-		GFF7088	0.36	-0.7
11,088	-		GFF7088	0.36	-1.2
11,088	-		GFF7088	0.36	+0.0
11,088	-		GFF7088	0.36	-1.1
11,088	-		GFF7088	0.36	-0.6
11,088	-		GFF7088	0.36	-0.6
11,088	-		GFF7088	0.36	-0.8
11,088	-		GFF7088	0.36	+0.3
11,230	+		GFF7088	0.47	+0.3
11,230	+		GFF7088	0.47	-0.4
11,230	+		GFF7088	0.47	-0.8
11,231	-		GFF7088	0.47	-0.6
11,234	+		GFF7088	0.47	+0.2
11,234	+		GFF7088	0.47	-0.5
11,234	+		GFF7088	0.47	-0.1
11,234	+		GFF7088	0.47	-0.7
11,234	+		GFF7088	0.47	-0.9
11,234	+		GFF7088	0.47	-0.7
11,234	+		GFF7088	0.47	+0.0
11,234	+		GFF7088	0.47	-0.1
11,234	+		GFF7088	0.47	+0.3
11,234	+		GFF7088	0.47	-0.6
11,234	+		GFF7088	0.47	+0.7
11,235	-		GFF7088	0.47	-1.0
11,235	-		GFF7088	0.47	+0.2
11,235	-		GFF7088	0.47	-0.6
11,235	-		GFF7088	0.47	-0.4
11,235	-		GFF7088	0.47	-2.7
11,235	-		GFF7088	0.47	+1.3
11,235	-		GFF7088	0.47	-1.3
11,324	+		GFF7088	0.54	-0.4
11,414	+		GFF7088	0.60	-0.5
11,414	+		GFF7088	0.60	+0.0
11,414	+		GFF7088	0.60	-1.6
11,414	+		GFF7088	0.60	-2.5
11,414	+		GFF7088	0.60	-0.2
11,414	+		GFF7088	0.60	+0.3
11,414	+		GFF7088	0.60	-0.8
11,415	-		GFF7088	0.60	-1.3
11,441	+		GFF7088	0.62	-2.6
11,441	+		GFF7088	0.62	-1.3
11,442	-		GFF7088	0.62	-0.9
11,476	+		GFF7088	0.65	-0.5
11,476	+		GFF7088	0.65	-0.3
11,476	+		GFF7088	0.65	+0.2
11,476	+		GFF7088	0.65	+0.5
11,476	+		GFF7088	0.65	-0.8
11,477	-		GFF7088	0.65	-0.5
11,477	-		GFF7088	0.65	-0.5
11,522	+		GFF7088	0.68	-0.5
11,522	+		GFF7088	0.68	-0.3
11,522	+		GFF7088	0.68	-0.6
11,523	-		GFF7088	0.68	+1.2
11,643	+		GFF7088	0.77	+0.4
11,643	+		GFF7088	0.77	-0.3
11,644	-		GFF7088	0.77	-0.5
11,644	-		GFF7088	0.77	-1.0
11,644	-		GFF7088	0.77	+0.2
11,644	-		GFF7088	0.77	+0.5
11,644	-		GFF7088	0.77	-0.3
11,659	+		GFF7088	0.78	+0.8
11,659	+		GFF7088	0.78	+0.4
11,659	+		GFF7088	0.78	-1.2
11,659	+		GFF7088	0.78	-0.1
11,660	-		GFF7088	0.78	-0.6
11,660	-		GFF7088	0.78	-0.7
11,663	+		GFF7088	0.79	-0.9
11,663	+		GFF7088	0.79	-0.4
11,663	+		GFF7088	0.79	+0.4
11,663	+		GFF7088	0.79	-0.8
11,663	+		GFF7088	0.79	+0.4
11,663	+		GFF7088	0.79	-1.0
11,663	+		GFF7088	0.79	-0.4
11,664	-		GFF7088	0.79	+0.5
11,664	-		GFF7088	0.79	+0.8
11,664	-		GFF7088	0.79	+1.3
11,664	-		GFF7088	0.79	-0.9
11,664	-		GFF7088	0.79	-2.4
11,666	+		GFF7088	0.79	+0.3
11,666	+		GFF7088	0.79	-0.3
11,666	+		GFF7088	0.79	-0.3
11,666	+		GFF7088	0.79	+0.3
11,666	+		GFF7088	0.79	+0.1
11,666	+		GFF7088	0.79	-0.1
11,666	+		GFF7088	0.79	-0.8
11,666	+		GFF7088	0.79	-0.3
11,666	+		GFF7088	0.79	+1.2
11,666	+		GFF7088	0.79	+0.7
11,666	+		GFF7088	0.79	-2.1
11,666	+		GFF7088	0.79	+0.6
11,666	+		GFF7088	0.79	-0.6
11,667	-		GFF7088	0.79	+0.3
11,667	-		GFF7088	0.79	-0.4
11,667	-		GFF7088	0.79	-0.3
11,667	-		GFF7088	0.79	-0.0
11,667	-		GFF7088	0.79	+0.9
11,667	-		GFF7088	0.79	-0.4
11,667	-		GFF7088	0.79	-0.1
11,667	-		GFF7088	0.79	+0.4
11,667	-		GFF7088	0.79	-0.1
11,667	-		GFF7088	0.79	+1.2
11,667	-		GFF7088	0.79	-1.6
11,667	-		GFF7088	0.79	-2.2
11,726	+		GFF7088	0.83	-0.4
11,726	+		GFF7088	0.83	-1.0
11,726	+		GFF7088	0.83	-0.1
11,727	-		GFF7088	0.83	-1.3
11,777	+		GFF7088	0.87	-0.0
11,777	+		GFF7088	0.87	+0.3
11,778	-		GFF7088	0.87	-1.2
11,778	-		GFF7088	0.87	-0.1
11,885	+				+1.3
11,885	+				-0.8
11,885	+				-0.8
11,885	+				-0.5
11,886	-				-1.1
11,886	-				-0.7
11,886	-				-0.4
11,886	-				-0.4
11,886	-				-0.1
11,886	-				-0.3
12,207	+		GFF7089	0.31	+1.0
12,321	+		GFF7089	0.46	+0.6
12,321	+		GFF7089	0.46	+0.3
12,321	+		GFF7089	0.46	-0.1
12,321	+		GFF7089	0.46	-2.1
12,321	+		GFF7089	0.46	-0.7
12,321	+		GFF7089	0.46	+1.5
12,322	-		GFF7089	0.46	+0.2
12,322	-		GFF7089	0.46	-0.1
12,322	-		GFF7089	0.46	-0.9
12,322	-		GFF7089	0.46	-0.1
12,322	-		GFF7089	0.46	-1.6
12,426	+		GFF7089	0.59	-0.2
12,426	+		GFF7089	0.59	+0.1
12,426	+		GFF7089	0.59	-0.1
12,427	-		GFF7089	0.59	-0.8
12,474	+		GFF7089	0.65	-0.6
12,475	-		GFF7089	0.65	-1.6
12,475	-		GFF7089	0.65	-0.3
12,475	-		GFF7089	0.65	-0.8
12,608	-		GFF7089	0.82	-0.3
12,637	+		GFF7089	0.86	+1.0
12,638	-		GFF7089	0.86	+0.4
12,718	-				+0.7
12,826	+				-0.1
12,827	-				+0.1
12,845	+		GFF7090	0.12	-0.2
12,845	+		GFF7090	0.12	-1.6
12,846	-		GFF7090	0.12	+0.7
12,848	+		GFF7090	0.13	-0.6
12,848	+		GFF7090	0.13	-3.4
12,848	+		GFF7090	0.13	-0.2
12,848	+		GFF7090	0.13	-0.6
12,848	+		GFF7090	0.13	+1.2
12,848	+		GFF7090	0.13	+0.1
12,849	-		GFF7090	0.13	-0.3
12,849	-		GFF7090	0.13	-0.1
12,849	-		GFF7090	0.13	+0.7
12,953	+		GFF7090	0.30	-0.6
12,954	-		GFF7090	0.30	+1.2
12,954	-		GFF7090	0.30	+0.4
12,954	-		GFF7090	0.30	+0.1