Strain Fitness in Variovorax sp. SCN45 around GFF698

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF696 and GFF697 are separated by 3 nucleotidesGFF697 and GFF698 are separated by 121 nucleotidesGFF698 and GFF699 are separated by 77 nucleotidesGFF699 and GFF700 are separated by 34 nucleotides GFF696 - Glycosyl transferase, group 2 family, at 750,942 to 752,372 GFF696 GFF697 - FIG074102: hypothetical protein, at 752,376 to 753,200 GFF697 GFF698 - Transcriptional regulator, LysR family, at 753,322 to 754,206 GFF698 GFF699 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 754,284 to 755,006 GFF699 GFF700 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 755,041 to 756,987 GFF700 Position (kb) 753 754 755Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 752.448 kb on + strandat 752.448 kb on + strandat 752.448 kb on + strandat 752.449 kb on - strandat 752.449 kb on - strandat 752.449 kb on - strandat 752.659 kb on + strand, within GFF697at 752.659 kb on + strand, within GFF697at 752.660 kb on - strand, within GFF697at 752.794 kb on + strand, within GFF697at 752.794 kb on + strand, within GFF697at 752.794 kb on + strand, within GFF697at 752.795 kb on - strand, within GFF697at 752.795 kb on - strand, within GFF697at 752.795 kb on - strand, within GFF697at 752.795 kb on - strand, within GFF697at 752.923 kb on + strand, within GFF697at 752.924 kb on - strand, within GFF697at 752.935 kb on + strand, within GFF697at 752.935 kb on + strand, within GFF697at 752.935 kb on + strand, within GFF697at 752.935 kb on + strand, within GFF697at 752.935 kb on + strand, within GFF697at 752.936 kb on - strand, within GFF697at 752.936 kb on - strand, within GFF697at 752.936 kb on - strand, within GFF697at 752.936 kb on - strand, within GFF697at 752.960 kb on - strand, within GFF697at 752.960 kb on - strand, within GFF697at 752.960 kb on - strand, within GFF697at 752.965 kb on + strand, within GFF697at 752.965 kb on + strand, within GFF697at 752.965 kb on + strand, within GFF697at 752.965 kb on + strand, within GFF697at 752.965 kb on + strand, within GFF697at 752.966 kb on - strand, within GFF697at 752.966 kb on - strand, within GFF697at 752.966 kb on - strand, within GFF697at 752.966 kb on - strand, within GFF697at 752.966 kb on - strand, within GFF697at 752.966 kb on - strand, within GFF697at 752.966 kb on - strand, within GFF697at 753.100 kb on + strand, within GFF697at 753.100 kb on + strand, within GFF697at 753.100 kb on + strand, within GFF697at 753.101 kb on - strand, within GFF697at 753.101 kb on - strand, within GFF697at 753.101 kb on - strand, within GFF697at 753.101 kb on - strand, within GFF697at 753.160 kb on + strandat 753.160 kb on + strandat 753.160 kb on + strandat 753.161 kb on - strandat 753.161 kb on - strandat 753.377 kb on + strandat 753.377 kb on + strandat 753.377 kb on + strandat 753.377 kb on + strandat 753.377 kb on + strandat 753.377 kb on + strandat 753.377 kb on + strandat 753.377 kb on + strandat 753.377 kb on + strandat 753.377 kb on + strandat 753.377 kb on + strandat 753.377 kb on + strandat 753.377 kb on + strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.378 kb on - strandat 753.393 kb on - strandat 753.472 kb on + strand, within GFF698at 753.472 kb on + strand, within GFF698at 753.473 kb on - strand, within GFF698at 753.491 kb on + strand, within GFF698at 753.491 kb on + strand, within GFF698at 753.491 kb on + strand, within GFF698at 753.491 kb on + strand, within GFF698at 753.491 kb on + strand, within GFF698at 753.491 kb on + strand, within GFF698at 753.491 kb on + strand, within GFF698at 753.492 kb on - strand, within GFF698at 753.492 kb on - strand, within GFF698at 753.492 kb on - strand, within GFF698at 753.492 kb on - strand, within GFF698at 753.492 kb on - strand, within GFF698at 753.492 kb on - strand, within GFF698at 753.492 kb on - strand, within GFF698at 753.492 kb on - strand, within GFF698at 753.612 kb on - strand, within GFF698at 753.623 kb on + strand, within GFF698at 753.623 kb on + strand, within GFF698at 753.623 kb on + strand, within GFF698at 753.624 kb on - strand, within GFF698at 753.624 kb on - strand, within GFF698at 753.624 kb on - strand, within GFF698at 753.624 kb on - strand, within GFF698at 753.695 kb on + strand, within GFF698at 753.695 kb on + strand, within GFF698at 753.696 kb on - strand, within GFF698at 753.696 kb on - strand, within GFF698at 753.696 kb on - strand, within GFF698at 753.696 kb on - strand, within GFF698at 753.696 kb on - strand, within GFF698at 753.696 kb on - strand, within GFF698at 753.696 kb on - strand, within GFF698at 753.791 kb on + strand, within GFF698at 753.855 kb on - strand, within GFF698at 753.866 kb on + strand, within GFF698at 753.866 kb on + strand, within GFF698at 753.866 kb on + strand, within GFF698at 753.867 kb on - strand, within GFF698at 754.010 kb on + strand, within GFF698at 754.271 kb on + strandat 754.285 kb on + strandat 754.285 kb on + strandat 754.285 kb on + strandat 754.303 kb on + strandat 754.303 kb on + strandat 754.303 kb on + strandat 754.303 kb on + strandat 754.303 kb on + strandat 754.304 kb on - strandat 754.382 kb on - strand, within GFF699at 754.382 kb on - strand, within GFF699at 754.382 kb on - strand, within GFF699at 754.382 kb on - strand, within GFF699at 754.382 kb on - strand, within GFF699at 754.795 kb on + strand, within GFF699at 754.795 kb on + strand, within GFF699at 754.795 kb on + strand, within GFF699at 754.795 kb on + strand, within GFF699at 754.796 kb on - strand, within GFF699at 754.796 kb on - strand, within GFF699at 754.796 kb on - strand, within GFF699at 754.796 kb on - strand, within GFF699at 754.975 kb on + strandat 755.060 kb on + strandat 755.060 kb on + strandat 755.060 kb on + strandat 755.060 kb on + strandat 755.061 kb on - strandat 755.061 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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752,448 + +2.7
752,448 + -0.8
752,448 + +0.7
752,449 - -0.6
752,449 - +0.2
752,449 - -0.4
752,659 + GFF697 0.34 -1.2
752,659 + GFF697 0.34 +0.6
752,660 - GFF697 0.34 +0.5
752,794 + GFF697 0.51 +0.4
752,794 + GFF697 0.51 -0.9
752,794 + GFF697 0.51 +0.6
752,795 - GFF697 0.51 -0.1
752,795 - GFF697 0.51 -1.2
752,795 - GFF697 0.51 -0.3
752,795 - GFF697 0.51 -1.8
752,923 + GFF697 0.66 -1.2
752,924 - GFF697 0.66 -0.6
752,935 + GFF697 0.68 +0.2
752,935 + GFF697 0.68 +0.1
752,935 + GFF697 0.68 -0.5
752,935 + GFF697 0.68 +1.4
752,935 + GFF697 0.68 -0.6
752,936 - GFF697 0.68 -1.5
752,936 - GFF697 0.68 -1.2
752,936 - GFF697 0.68 -1.4
752,936 - GFF697 0.68 -0.0
752,960 - GFF697 0.71 +1.0
752,960 - GFF697 0.71 +0.9
752,960 - GFF697 0.71 +0.3
752,965 + GFF697 0.71 +0.1
752,965 + GFF697 0.71 -2.2
752,965 + GFF697 0.71 -1.4
752,965 + GFF697 0.71 -0.6
752,965 + GFF697 0.71 -1.6
752,966 - GFF697 0.72 +0.0
752,966 - GFF697 0.72 -1.2
752,966 - GFF697 0.72 +0.2
752,966 - GFF697 0.72 +0.1
752,966 - GFF697 0.72 +0.2
752,966 - GFF697 0.72 +1.0
752,966 - GFF697 0.72 -0.1
753,100 + GFF697 0.88 +0.3
753,100 + GFF697 0.88 -0.1
753,100 + GFF697 0.88 +0.5
753,101 - GFF697 0.88 +0.5
753,101 - GFF697 0.88 +0.6
753,101 - GFF697 0.88 +0.0
753,101 - GFF697 0.88 +1.4
753,160 + -0.9
753,160 + -0.2
753,160 + -1.0
753,161 - +0.1
753,161 - +1.4
753,377 + +0.0
753,377 + +0.1
753,377 + +0.0
753,377 + +0.1
753,377 + -0.3
753,377 + -2.1
753,377 + +0.9
753,377 + +0.2
753,377 + -0.4
753,377 + +0.3
753,377 + -1.6
753,377 + -0.4
753,377 + -1.4
753,378 - +2.0
753,378 - -0.7
753,378 - -2.2
753,378 - -1.1
753,378 - +0.7
753,378 - +0.5
753,378 - -0.6
753,378 - -0.6
753,378 - -3.1
753,378 - -0.4
753,378 - -1.1
753,378 - +0.1
753,378 - +1.7
753,378 - +0.8
753,378 - -1.5
753,378 - +0.1
753,378 - -0.6
753,393 - +0.4
753,472 + GFF698 0.17 -1.5
753,472 + GFF698 0.17 -1.7
753,473 - GFF698 0.17 -0.2
753,491 + GFF698 0.19 +1.8
753,491 + GFF698 0.19 +0.4
753,491 + GFF698 0.19 -0.3
753,491 + GFF698 0.19 -0.6
753,491 + GFF698 0.19 -0.4
753,491 + GFF698 0.19 -0.7
753,491 + GFF698 0.19 -0.2
753,492 - GFF698 0.19 -1.1
753,492 - GFF698 0.19 +0.4
753,492 - GFF698 0.19 -0.0
753,492 - GFF698 0.19 -0.2
753,492 - GFF698 0.19 +0.1
753,492 - GFF698 0.19 -1.3
753,492 - GFF698 0.19 -0.2
753,492 - GFF698 0.19 -0.7
753,612 - GFF698 0.33 -0.9
753,623 + GFF698 0.34 +0.8
753,623 + GFF698 0.34 -0.5
753,623 + GFF698 0.34 -1.1
753,624 - GFF698 0.34 -1.2
753,624 - GFF698 0.34 +0.1
753,624 - GFF698 0.34 -0.5
753,624 - GFF698 0.34 -1.0
753,695 + GFF698 0.42 +0.1
753,695 + GFF698 0.42 -1.0
753,696 - GFF698 0.42 +0.2
753,696 - GFF698 0.42 -0.4
753,696 - GFF698 0.42 -1.1
753,696 - GFF698 0.42 +2.4
753,696 - GFF698 0.42 -0.3
753,696 - GFF698 0.42 +0.1
753,696 - GFF698 0.42 +0.0
753,791 + GFF698 0.53 +0.2
753,855 - GFF698 0.60 +0.3
753,866 + GFF698 0.61 -1.4
753,866 + GFF698 0.61 -0.6
753,866 + GFF698 0.61 -1.2
753,867 - GFF698 0.62 +0.4
754,010 + GFF698 0.78 -0.5
754,271 + -0.0
754,285 + -0.7
754,285 + -0.4
754,285 + -0.7
754,303 + +0.2
754,303 + +0.6
754,303 + -0.8
754,303 + +1.4
754,303 + -0.5
754,304 - -0.7
754,382 - GFF699 0.14 -0.1
754,382 - GFF699 0.14 +0.1
754,382 - GFF699 0.14 +0.8
754,382 - GFF699 0.14 -1.4
754,382 - GFF699 0.14 -0.9
754,795 + GFF699 0.71 -0.0
754,795 + GFF699 0.71 -0.8
754,795 + GFF699 0.71 +0.6
754,795 + GFF699 0.71 +0.4
754,796 - GFF699 0.71 +0.7
754,796 - GFF699 0.71 -0.7
754,796 - GFF699 0.71 +1.4
754,796 - GFF699 0.71 +0.6
754,975 + +2.7
755,060 + +0.8
755,060 + -0.2
755,060 + -0.8
755,060 + +0.5
755,061 - -1.8
755,061 - -0.8

Or see this region's nucleotide sequence