Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6731 and GFF6732 overlap by 4 nucleotides GFF6732 and GFF6733 are separated by 4 nucleotides GFF6733 and GFF6734 are separated by 220 nucleotides
GFF6731 - Nucleoside ABC transporter, permease protein 1, at 41,497 to 42,435
GFF6731
GFF6732 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 42,432 to 43,310
GFF6732
GFF6733 - hypothetical protein, at 43,315 to 44,517
GFF6733
GFF6734 - Transcriptional regulator, AraC family, at 44,738 to 45,694
GFF6734
Position (kb) 43
44
45 Strain fitness (log2 ratio) -2
-1
0
1
2 at 42.490 kb on + strand at 42.490 kb on + strand at 42.491 kb on - strand at 42.523 kb on + strand, within GFF6732 at 42.526 kb on + strand, within GFF6732 at 42.526 kb on + strand, within GFF6732 at 42.526 kb on + strand, within GFF6732 at 42.526 kb on + strand, within GFF6732 at 42.526 kb on + strand, within GFF6732 at 42.527 kb on - strand, within GFF6732 at 42.527 kb on - strand, within GFF6732 at 42.527 kb on - strand, within GFF6732 at 42.527 kb on - strand, within GFF6732 at 42.632 kb on - strand, within GFF6732 at 42.632 kb on - strand, within GFF6732 at 42.662 kb on - strand, within GFF6732 at 43.219 kb on + strand, within GFF6732 at 43.253 kb on - strand at 43.253 kb on - strand at 43.453 kb on + strand, within GFF6733 at 43.453 kb on + strand, within GFF6733 at 43.453 kb on + strand, within GFF6733 at 43.454 kb on - strand, within GFF6733 at 43.616 kb on + strand, within GFF6733 at 43.700 kb on + strand, within GFF6733 at 43.701 kb on - strand, within GFF6733 at 43.701 kb on - strand, within GFF6733 at 43.736 kb on + strand, within GFF6733 at 43.737 kb on - strand, within GFF6733 at 44.336 kb on + strand, within GFF6733 at 44.975 kb on + strand, within GFF6734 at 44.976 kb on - strand, within GFF6734 at 45.065 kb on + strand, within GFF6734 at 45.065 kb on + strand, within GFF6734 at 45.066 kb on - strand, within GFF6734 at 45.083 kb on + strand, within GFF6734 at 45.084 kb on - strand, within GFF6734 at 45.242 kb on + strand, within GFF6734 at 45.242 kb on + strand, within GFF6734 at 45.510 kb on - strand, within GFF6734 at 45.510 kb on - strand, within GFF6734
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 42,490 + -0.6 42,490 + -0.4 42,491 - -0.8 42,523 + GFF6732 0.10 -0.2 42,526 + GFF6732 0.11 -0.4 42,526 + GFF6732 0.11 -0.4 42,526 + GFF6732 0.11 -0.2 42,526 + GFF6732 0.11 -0.6 42,526 + GFF6732 0.11 -0.7 42,527 - GFF6732 0.11 +0.3 42,527 - GFF6732 0.11 -1.6 42,527 - GFF6732 0.11 -0.1 42,527 - GFF6732 0.11 +0.8 42,632 - GFF6732 0.23 +0.3 42,632 - GFF6732 0.23 +1.6 42,662 - GFF6732 0.26 -1.9 43,219 + GFF6732 0.90 +0.5 43,253 - -1.5 43,253 - -0.9 43,453 + GFF6733 0.11 -2.1 43,453 + GFF6733 0.11 +2.3 43,453 + GFF6733 0.11 +1.1 43,454 - GFF6733 0.12 -0.4 43,616 + GFF6733 0.25 -1.4 43,700 + GFF6733 0.32 +0.2 43,701 - GFF6733 0.32 +0.1 43,701 - GFF6733 0.32 -0.3 43,736 + GFF6733 0.35 +0.6 43,737 - GFF6733 0.35 +1.0 44,336 + GFF6733 0.85 +0.0 44,975 + GFF6734 0.25 -1.6 44,976 - GFF6734 0.25 +0.7 45,065 + GFF6734 0.34 -0.8 45,065 + GFF6734 0.34 -0.6 45,066 - GFF6734 0.34 +1.1 45,083 + GFF6734 0.36 +0.4 45,084 - GFF6734 0.36 +0.3 45,242 + GFF6734 0.53 -1.0 45,242 + GFF6734 0.53 +0.0 45,510 - GFF6734 0.81 -2.0 45,510 - GFF6734 0.81 -0.0
Or see this region's nucleotide sequence