Strain Fitness in Variovorax sp. SCN45 around GFF6717

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6716 and GFF6717 are separated by 150 nucleotidesGFF6717 and GFF6718 are separated by 106 nucleotidesGFF6718 and GFF6719 are separated by 7 nucleotides GFF6716 - N-acyl-D-amino-acid deacylase (EC 3.5.1.81), at 24,520 to 26,001 GFF6716 GFF6717 - hypothetical protein, at 26,152 to 28,392 GFF6717 GFF6718 - no description, at 28,499 to 28,918 GFF6718 GFF6719 - hypothetical protein, at 28,926 to 29,489 GFF6719 Position (kb) 26 27 28 29Strain fitness (log2 ratio) -2 -1 0 1 2at 25.192 kb on + strand, within GFF6716at 25.390 kb on + strand, within GFF6716at 25.390 kb on + strand, within GFF6716at 25.391 kb on - strand, within GFF6716at 25.391 kb on - strand, within GFF6716at 25.391 kb on - strand, within GFF6716at 25.391 kb on - strand, within GFF6716at 25.396 kb on + strand, within GFF6716at 25.574 kb on - strand, within GFF6716at 25.870 kb on + strandat 25.870 kb on + strandat 25.870 kb on + strandat 25.870 kb on + strandat 26.043 kb on + strandat 26.069 kb on + strandat 26.163 kb on + strandat 26.253 kb on + strandat 26.253 kb on + strandat 26.254 kb on - strandat 26.254 kb on - strandat 26.357 kb on - strandat 26.479 kb on + strand, within GFF6717at 26.725 kb on + strand, within GFF6717at 26.725 kb on + strand, within GFF6717at 26.726 kb on - strand, within GFF6717at 26.752 kb on + strand, within GFF6717at 26.752 kb on + strand, within GFF6717at 26.753 kb on - strand, within GFF6717at 26.828 kb on + strand, within GFF6717at 26.829 kb on - strand, within GFF6717at 26.829 kb on - strand, within GFF6717at 26.852 kb on - strand, within GFF6717at 26.914 kb on + strand, within GFF6717at 26.914 kb on + strand, within GFF6717at 27.358 kb on + strand, within GFF6717at 27.359 kb on - strand, within GFF6717at 27.359 kb on - strand, within GFF6717at 27.359 kb on - strand, within GFF6717at 27.362 kb on - strand, within GFF6717at 27.362 kb on - strand, within GFF6717at 27.362 kb on - strand, within GFF6717at 27.403 kb on - strand, within GFF6717at 27.448 kb on - strand, within GFF6717at 27.448 kb on - strand, within GFF6717at 27.451 kb on + strand, within GFF6717at 27.452 kb on - strand, within GFF6717at 27.538 kb on + strand, within GFF6717at 27.539 kb on - strand, within GFF6717at 27.541 kb on + strand, within GFF6717at 27.541 kb on + strand, within GFF6717at 27.541 kb on + strand, within GFF6717at 27.542 kb on - strand, within GFF6717at 27.542 kb on - strand, within GFF6717at 27.684 kb on + strand, within GFF6717at 27.685 kb on - strand, within GFF6717at 27.685 kb on - strand, within GFF6717at 27.685 kb on - strand, within GFF6717at 27.685 kb on - strand, within GFF6717at 27.760 kb on + strand, within GFF6717at 27.761 kb on - strand, within GFF6717at 27.852 kb on + strand, within GFF6717at 27.852 kb on + strand, within GFF6717at 27.853 kb on - strand, within GFF6717at 27.853 kb on - strand, within GFF6717at 28.015 kb on + strand, within GFF6717at 28.015 kb on + strand, within GFF6717at 28.016 kb on - strand, within GFF6717at 28.047 kb on + strand, within GFF6717at 28.047 kb on + strand, within GFF6717at 28.102 kb on + strand, within GFF6717at 28.103 kb on - strand, within GFF6717at 28.118 kb on + strand, within GFF6717at 28.153 kb on + strand, within GFF6717at 28.177 kb on + strandat 28.177 kb on + strandat 28.177 kb on + strandat 28.177 kb on + strandat 28.177 kb on + strandat 28.177 kb on + strandat 28.177 kb on + strandat 28.178 kb on - strandat 28.178 kb on - strandat 28.178 kb on - strandat 28.178 kb on - strandat 28.178 kb on - strandat 28.178 kb on - strandat 28.178 kb on - strandat 28.178 kb on - strandat 28.178 kb on - strandat 28.178 kb on - strandat 28.179 kb on + strandat 28.179 kb on + strandat 28.179 kb on + strandat 28.180 kb on - strandat 28.288 kb on + strandat 28.315 kb on + strandat 28.315 kb on + strandat 28.316 kb on - strandat 28.316 kb on - strandat 28.575 kb on - strand, within GFF6718at 28.609 kb on + strand, within GFF6718at 28.839 kb on - strand, within GFF6718at 29.070 kb on - strand, within GFF6719at 29.079 kb on + strand, within GFF6719at 29.169 kb on + strand, within GFF6719at 29.169 kb on + strand, within GFF6719at 29.169 kb on + strand, within GFF6719at 29.169 kb on + strand, within GFF6719at 29.169 kb on + strand, within GFF6719at 29.170 kb on - strand, within GFF6719at 29.170 kb on - strand, within GFF6719at 29.170 kb on - strand, within GFF6719at 29.170 kb on - strand, within GFF6719at 29.170 kb on - strand, within GFF6719at 29.170 kb on - strand, within GFF6719at 29.170 kb on - strand, within GFF6719at 29.170 kb on - strand, within GFF6719at 29.220 kb on + strand, within GFF6719at 29.221 kb on - strand, within GFF6719at 29.221 kb on - strand, within GFF6719at 29.221 kb on - strand, within GFF6719at 29.221 kb on - strand, within GFF6719at 29.221 kb on - strand, within GFF6719at 29.334 kb on + strand, within GFF6719at 29.335 kb on - strand, within GFF6719at 29.335 kb on - strand, within GFF6719at 29.369 kb on + strand, within GFF6719at 29.370 kb on - strand, within GFF6719

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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25,192 + GFF6716 0.45 -0.8
25,390 + GFF6716 0.59 +1.0
25,390 + GFF6716 0.59 +0.1
25,391 - GFF6716 0.59 +0.6
25,391 - GFF6716 0.59 +0.4
25,391 - GFF6716 0.59 -1.9
25,391 - GFF6716 0.59 -0.4
25,396 + GFF6716 0.59 +1.8
25,574 - GFF6716 0.71 -0.4
25,870 + -1.3
25,870 + -0.1
25,870 + +0.5
25,870 + -0.2
26,043 + -0.6
26,069 + +1.0
26,163 + -0.8
26,253 + -0.1
26,253 + -0.5
26,254 - -0.7
26,254 - +0.9
26,357 - +0.4
26,479 + GFF6717 0.15 -0.4
26,725 + GFF6717 0.26 -0.5
26,725 + GFF6717 0.26 +1.6
26,726 - GFF6717 0.26 -0.6
26,752 + GFF6717 0.27 -0.7
26,752 + GFF6717 0.27 -0.2
26,753 - GFF6717 0.27 -1.9
26,828 + GFF6717 0.30 -0.6
26,829 - GFF6717 0.30 -1.1
26,829 - GFF6717 0.30 -0.8
26,852 - GFF6717 0.31 -0.5
26,914 + GFF6717 0.34 -0.4
26,914 + GFF6717 0.34 +0.9
27,358 + GFF6717 0.54 -1.0
27,359 - GFF6717 0.54 -1.6
27,359 - GFF6717 0.54 -0.5
27,359 - GFF6717 0.54 -0.1
27,362 - GFF6717 0.54 -0.7
27,362 - GFF6717 0.54 -1.2
27,362 - GFF6717 0.54 -0.1
27,403 - GFF6717 0.56 -0.0
27,448 - GFF6717 0.58 +0.2
27,448 - GFF6717 0.58 -0.6
27,451 + GFF6717 0.58 +0.4
27,452 - GFF6717 0.58 +0.6
27,538 + GFF6717 0.62 +0.9
27,539 - GFF6717 0.62 +0.3
27,541 + GFF6717 0.62 +0.3
27,541 + GFF6717 0.62 -0.0
27,541 + GFF6717 0.62 -0.0
27,542 - GFF6717 0.62 -0.2
27,542 - GFF6717 0.62 +0.2
27,684 + GFF6717 0.68 -0.6
27,685 - GFF6717 0.68 +0.9
27,685 - GFF6717 0.68 -1.0
27,685 - GFF6717 0.68 -0.2
27,685 - GFF6717 0.68 -0.4
27,760 + GFF6717 0.72 +0.4
27,761 - GFF6717 0.72 +0.3
27,852 + GFF6717 0.76 -0.5
27,852 + GFF6717 0.76 -0.4
27,853 - GFF6717 0.76 -0.1
27,853 - GFF6717 0.76 +0.1
28,015 + GFF6717 0.83 -0.2
28,015 + GFF6717 0.83 -2.0
28,016 - GFF6717 0.83 -0.3
28,047 + GFF6717 0.85 +0.9
28,047 + GFF6717 0.85 -1.1
28,102 + GFF6717 0.87 -0.1
28,103 - GFF6717 0.87 +0.1
28,118 + GFF6717 0.88 -0.0
28,153 + GFF6717 0.89 -0.9
28,177 + -0.2
28,177 + -0.3
28,177 + -1.4
28,177 + +1.3
28,177 + +1.2
28,177 + -0.2
28,177 + +0.1
28,178 - -0.5
28,178 - +1.1
28,178 - -0.6
28,178 - -0.0
28,178 - -0.5
28,178 - -0.1
28,178 - +0.4
28,178 - -0.1
28,178 - -0.3
28,178 - -0.6
28,179 + -0.7
28,179 + +0.3
28,179 + +0.3
28,180 - +0.2
28,288 + -0.8
28,315 + -0.1
28,315 + +0.3
28,316 - -0.3
28,316 - -1.2
28,575 - GFF6718 0.18 +1.3
28,609 + GFF6718 0.26 -0.3
28,839 - GFF6718 0.81 +1.0
29,070 - GFF6719 0.26 +0.2
29,079 + GFF6719 0.27 +0.5
29,169 + GFF6719 0.43 -1.2
29,169 + GFF6719 0.43 +0.4
29,169 + GFF6719 0.43 -0.3
29,169 + GFF6719 0.43 +0.9
29,169 + GFF6719 0.43 +0.8
29,170 - GFF6719 0.43 +0.2
29,170 - GFF6719 0.43 -1.5
29,170 - GFF6719 0.43 +0.6
29,170 - GFF6719 0.43 +1.2
29,170 - GFF6719 0.43 -0.5
29,170 - GFF6719 0.43 -0.2
29,170 - GFF6719 0.43 -0.9
29,170 - GFF6719 0.43 +0.4
29,220 + GFF6719 0.52 -0.4
29,221 - GFF6719 0.52 +0.6
29,221 - GFF6719 0.52 -0.1
29,221 - GFF6719 0.52 -0.3
29,221 - GFF6719 0.52 -1.0
29,221 - GFF6719 0.52 +1.0
29,334 + GFF6719 0.72 -1.7
29,335 - GFF6719 0.73 -2.5
29,335 - GFF6719 0.73 -0.9
29,369 + GFF6719 0.79 -0.7
29,370 - GFF6719 0.79 -1.6

Or see this region's nucleotide sequence