Strain Fitness in Variovorax sp. SCN45 around GFF6349

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6347 and GFF6348 are separated by 107 nucleotidesGFF6348 and GFF6349 are separated by 36 nucleotidesGFF6349 and GFF6350 are separated by 78 nucleotides GFF6347 - AAA+ ATPase superfamily protein YifB/ComM, associated with DNA recombination, at 9,530 to 10,933 GFF6347 GFF6348 - no description, at 11,041 to 11,322 GFF6348 GFF6349 - no description, at 11,359 to 11,658 GFF6349 GFF6350 - T6SS Serine/threonine protein kinase (EC 2.7.11.1) PpkA, at 11,737 to 13,650 GFF6350 Position (kb) 11 12Strain fitness (log2 ratio) -2 -1 0 1 2at 10.700 kb on + strand, within GFF6347at 10.701 kb on - strand, within GFF6347at 10.904 kb on + strandat 10.972 kb on + strandat 10.972 kb on + strandat 10.973 kb on - strandat 10.973 kb on - strandat 10.973 kb on - strandat 10.973 kb on - strandat 10.973 kb on - strandat 10.973 kb on - strandat 11.113 kb on + strand, within GFF6348at 11.113 kb on + strand, within GFF6348at 11.113 kb on + strand, within GFF6348at 11.113 kb on + strand, within GFF6348at 11.113 kb on + strand, within GFF6348at 11.113 kb on + strand, within GFF6348at 11.114 kb on - strand, within GFF6348at 11.114 kb on - strand, within GFF6348at 11.114 kb on - strand, within GFF6348at 11.114 kb on - strand, within GFF6348at 11.114 kb on - strand, within GFF6348at 11.141 kb on + strand, within GFF6348at 11.142 kb on - strand, within GFF6348at 11.142 kb on - strand, within GFF6348at 11.172 kb on - strand, within GFF6348at 11.251 kb on + strand, within GFF6348at 11.251 kb on + strand, within GFF6348at 11.251 kb on + strand, within GFF6348at 11.251 kb on + strand, within GFF6348at 11.252 kb on - strand, within GFF6348at 11.252 kb on - strand, within GFF6348at 11.252 kb on - strand, within GFF6348at 11.252 kb on - strand, within GFF6348at 11.252 kb on - strand, within GFF6348at 11.299 kb on + strandat 11.300 kb on - strandat 11.300 kb on - strandat 11.320 kb on + strandat 11.321 kb on - strandat 11.405 kb on - strand, within GFF6349at 11.515 kb on + strand, within GFF6349at 11.515 kb on + strand, within GFF6349at 11.516 kb on - strand, within GFF6349at 11.559 kb on - strand, within GFF6349at 11.559 kb on - strand, within GFF6349at 11.671 kb on - strandat 11.671 kb on - strandat 11.738 kb on + strandat 11.738 kb on + strandat 11.739 kb on - strandat 11.801 kb on + strandat 11.802 kb on - strandat 11.837 kb on + strandat 11.837 kb on + strandat 11.837 kb on + strandat 11.837 kb on + strandat 11.838 kb on - strandat 11.838 kb on - strandat 11.838 kb on - strandat 11.838 kb on - strandat 12.068 kb on + strand, within GFF6350at 12.069 kb on - strand, within GFF6350at 12.069 kb on - strand, within GFF6350at 12.077 kb on + strand, within GFF6350at 12.077 kb on + strand, within GFF6350at 12.378 kb on + strand, within GFF6350

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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10,700 + GFF6347 0.83 -0.6
10,701 - GFF6347 0.83 -0.5
10,904 + +1.6
10,972 + -1.3
10,972 + +0.6
10,973 - -0.5
10,973 - +0.0
10,973 - +0.1
10,973 - +1.0
10,973 - -0.2
10,973 - -0.5
11,113 + GFF6348 0.26 -0.0
11,113 + GFF6348 0.26 +0.0
11,113 + GFF6348 0.26 +2.0
11,113 + GFF6348 0.26 +0.5
11,113 + GFF6348 0.26 -2.5
11,113 + GFF6348 0.26 +0.0
11,114 - GFF6348 0.26 -0.1
11,114 - GFF6348 0.26 -1.5
11,114 - GFF6348 0.26 +2.0
11,114 - GFF6348 0.26 +0.5
11,114 - GFF6348 0.26 +0.7
11,141 + GFF6348 0.35 -1.7
11,142 - GFF6348 0.36 +0.4
11,142 - GFF6348 0.36 -2.1
11,172 - GFF6348 0.46 -0.0
11,251 + GFF6348 0.74 -2.7
11,251 + GFF6348 0.74 +0.7
11,251 + GFF6348 0.74 -0.0
11,251 + GFF6348 0.74 -1.2
11,252 - GFF6348 0.75 +0.1
11,252 - GFF6348 0.75 +0.8
11,252 - GFF6348 0.75 -0.4
11,252 - GFF6348 0.75 +0.2
11,252 - GFF6348 0.75 -0.1
11,299 + -0.2
11,300 - -0.4
11,300 - -0.9
11,320 + -0.6
11,321 - -0.5
11,405 - GFF6349 0.15 +0.2
11,515 + GFF6349 0.52 -0.6
11,515 + GFF6349 0.52 -1.0
11,516 - GFF6349 0.52 -1.4
11,559 - GFF6349 0.67 -1.0
11,559 - GFF6349 0.67 -1.0
11,671 - +0.2
11,671 - -0.1
11,738 + +2.3
11,738 + -1.0
11,739 - -0.4
11,801 + +0.6
11,802 - +1.0
11,837 + -0.5
11,837 + -0.7
11,837 + -0.4
11,837 + +0.3
11,838 - +0.1
11,838 - +2.7
11,838 - +1.4
11,838 - -1.5
12,068 + GFF6350 0.17 -1.4
12,069 - GFF6350 0.17 -0.9
12,069 - GFF6350 0.17 +2.3
12,077 + GFF6350 0.18 +0.5
12,077 + GFF6350 0.18 +0.2
12,378 + GFF6350 0.33 -0.0

Or see this region's nucleotide sequence