Strain Fitness in Variovorax sp. SCN45 around GFF6274

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6271 and GFF6273 are separated by 50 nucleotidesGFF6273 and GFF6274 are separated by 65 nucleotidesGFF6274 and GFF6275 overlap by 4 nucleotidesGFF6275 and GFF6276 overlap by 11 nucleotides GFF6271 - Phosphatidylglycerophosphatase A (EC 3.1.3.27), at 63,831 to 64,358 GFF6271 GFF6273 - Nicotinamide-nucleotide amidase (EC 3.5.1.42), at 64,409 to 64,918 GFF6273 GFF6274 - Ketosteroid isomerase-related protein, at 64,984 to 65,478 GFF6274 GFF6275 - hypothetical protein, at 65,475 to 65,795 GFF6275 GFF6276 - Uncharacterized MFS-type transporter, at 65,785 to 66,972 GFF6276 Position (kb) 64 65 66Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 64.191 kb on + strand, within GFF6271at 64.192 kb on - strand, within GFF6271at 64.356 kb on + strandat 64.356 kb on + strandat 64.356 kb on + strandat 64.357 kb on - strandat 64.357 kb on - strandat 64.357 kb on - strandat 64.357 kb on - strandat 64.357 kb on - strandat 64.357 kb on - strandat 64.589 kb on + strand, within GFF6273at 64.589 kb on + strand, within GFF6273at 64.589 kb on + strand, within GFF6273at 64.589 kb on + strand, within GFF6273at 64.589 kb on + strand, within GFF6273at 64.589 kb on + strand, within GFF6273at 64.590 kb on - strand, within GFF6273at 64.590 kb on - strand, within GFF6273at 64.590 kb on - strand, within GFF6273at 64.590 kb on - strand, within GFF6273at 64.590 kb on - strand, within GFF6273at 64.590 kb on - strand, within GFF6273at 64.877 kb on + strandat 64.877 kb on + strandat 64.878 kb on - strandat 64.878 kb on - strandat 64.944 kb on + strandat 64.945 kb on - strandat 64.945 kb on - strandat 64.945 kb on - strandat 64.945 kb on - strandat 65.023 kb on + strandat 65.023 kb on + strandat 65.023 kb on + strandat 65.024 kb on - strandat 65.024 kb on - strandat 65.024 kb on - strandat 65.024 kb on - strandat 65.024 kb on - strandat 65.024 kb on - strandat 65.024 kb on - strandat 65.068 kb on + strand, within GFF6274at 65.068 kb on + strand, within GFF6274at 65.068 kb on + strand, within GFF6274at 65.069 kb on - strand, within GFF6274at 65.069 kb on - strand, within GFF6274at 65.069 kb on - strand, within GFF6274at 65.069 kb on - strand, within GFF6274at 65.248 kb on + strand, within GFF6274at 65.248 kb on + strand, within GFF6274at 65.458 kb on + strandat 65.458 kb on + strandat 65.458 kb on + strandat 65.458 kb on + strandat 65.458 kb on + strandat 65.459 kb on - strandat 65.459 kb on - strandat 65.459 kb on - strandat 65.459 kb on - strandat 65.459 kb on - strandat 65.459 kb on - strandat 65.459 kb on - strandat 65.459 kb on - strandat 65.459 kb on - strandat 65.529 kb on + strand, within GFF6275at 65.530 kb on - strand, within GFF6275at 65.562 kb on + strand, within GFF6275at 65.562 kb on + strand, within GFF6275at 65.562 kb on + strand, within GFF6275at 65.563 kb on - strand, within GFF6275at 65.563 kb on - strand, within GFF6275at 65.563 kb on - strand, within GFF6275at 65.563 kb on - strand, within GFF6275at 65.563 kb on - strand, within GFF6275at 65.571 kb on + strand, within GFF6275at 65.571 kb on + strand, within GFF6275at 65.571 kb on + strand, within GFF6275at 65.571 kb on + strand, within GFF6275at 65.571 kb on + strand, within GFF6275at 65.571 kb on + strand, within GFF6275at 65.572 kb on - strand, within GFF6275at 65.572 kb on - strand, within GFF6275at 65.572 kb on - strand, within GFF6275at 65.572 kb on - strand, within GFF6275at 65.572 kb on - strand, within GFF6275at 65.572 kb on - strand, within GFF6275at 65.572 kb on - strand, within GFF6275at 65.727 kb on + strand, within GFF6275at 65.727 kb on + strand, within GFF6275at 65.727 kb on + strand, within GFF6275at 65.727 kb on + strand, within GFF6275at 65.728 kb on - strand, within GFF6275at 65.728 kb on - strand, within GFF6275at 65.728 kb on - strand, within GFF6275at 65.728 kb on - strand, within GFF6275at 65.728 kb on - strand, within GFF6275at 65.728 kb on - strand, within GFF6275at 65.728 kb on - strand, within GFF6275at 65.728 kb on - strand, within GFF6275at 65.748 kb on + strand, within GFF6275at 65.749 kb on - strand, within GFF6275at 65.749 kb on - strand, within GFF6275at 65.749 kb on - strand, within GFF6275at 66.008 kb on + strand, within GFF6276at 66.009 kb on - strand, within GFF6276at 66.029 kb on + strand, within GFF6276at 66.029 kb on + strand, within GFF6276at 66.030 kb on - strand, within GFF6276at 66.030 kb on - strand, within GFF6276at 66.131 kb on + strand, within GFF6276at 66.131 kb on + strand, within GFF6276at 66.132 kb on - strand, within GFF6276at 66.132 kb on - strand, within GFF6276at 66.132 kb on - strand, within GFF6276at 66.263 kb on + strand, within GFF6276at 66.263 kb on + strand, within GFF6276at 66.264 kb on - strand, within GFF6276at 66.264 kb on - strand, within GFF6276at 66.326 kb on + strand, within GFF6276at 66.326 kb on + strand, within GFF6276at 66.326 kb on + strand, within GFF6276at 66.326 kb on + strand, within GFF6276at 66.326 kb on + strand, within GFF6276at 66.326 kb on + strand, within GFF6276at 66.326 kb on + strand, within GFF6276at 66.326 kb on + strand, within GFF6276at 66.326 kb on + strand, within GFF6276at 66.326 kb on + strand, within GFF6276at 66.326 kb on + strand, within GFF6276at 66.327 kb on - strand, within GFF6276at 66.327 kb on - strand, within GFF6276at 66.327 kb on - strand, within GFF6276at 66.327 kb on - strand, within GFF6276at 66.330 kb on + strand, within GFF6276at 66.330 kb on + strand, within GFF6276at 66.330 kb on + strand, within GFF6276at 66.331 kb on - strand, within GFF6276at 66.455 kb on + strand, within GFF6276at 66.455 kb on + strand, within GFF6276at 66.456 kb on - strand, within GFF6276at 66.456 kb on - strand, within GFF6276

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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64,191 + GFF6271 0.68 +0.3
64,192 - GFF6271 0.68 -0.1
64,356 + -0.4
64,356 + -0.3
64,356 + -1.7
64,357 - +0.0
64,357 - -0.3
64,357 - +0.5
64,357 - +1.9
64,357 - -0.4
64,357 - +0.3
64,589 + GFF6273 0.35 -0.3
64,589 + GFF6273 0.35 -0.8
64,589 + GFF6273 0.35 +1.5
64,589 + GFF6273 0.35 +0.6
64,589 + GFF6273 0.35 +0.3
64,589 + GFF6273 0.35 -0.5
64,590 - GFF6273 0.35 +0.8
64,590 - GFF6273 0.35 +1.5
64,590 - GFF6273 0.35 -0.4
64,590 - GFF6273 0.35 -1.6
64,590 - GFF6273 0.35 -1.3
64,590 - GFF6273 0.35 +0.2
64,877 + +1.3
64,877 + +1.0
64,878 - -2.5
64,878 - -0.7
64,944 + -0.7
64,945 - -0.8
64,945 - -0.1
64,945 - +0.9
64,945 - -0.3
65,023 + +0.6
65,023 + -0.9
65,023 + -0.5
65,024 - +1.1
65,024 - -0.7
65,024 - -0.9
65,024 - +0.3
65,024 - -1.0
65,024 - +1.1
65,024 - -0.2
65,068 + GFF6274 0.17 -0.1
65,068 + GFF6274 0.17 -0.8
65,068 + GFF6274 0.17 +1.5
65,069 - GFF6274 0.17 +0.5
65,069 - GFF6274 0.17 +0.2
65,069 - GFF6274 0.17 -0.3
65,069 - GFF6274 0.17 +0.6
65,248 + GFF6274 0.53 -0.0
65,248 + GFF6274 0.53 +0.7
65,458 + +0.1
65,458 + +2.1
65,458 + -0.4
65,458 + +0.0
65,458 + -0.8
65,459 - -0.1
65,459 - -1.7
65,459 - -0.9
65,459 - -1.3
65,459 - -0.4
65,459 - +1.3
65,459 - -1.0
65,459 - -0.1
65,459 - +1.1
65,529 + GFF6275 0.17 -0.7
65,530 - GFF6275 0.17 +0.8
65,562 + GFF6275 0.27 -0.5
65,562 + GFF6275 0.27 +0.0
65,562 + GFF6275 0.27 +0.5
65,563 - GFF6275 0.27 -0.9
65,563 - GFF6275 0.27 -0.6
65,563 - GFF6275 0.27 -0.6
65,563 - GFF6275 0.27 +0.2
65,563 - GFF6275 0.27 +0.6
65,571 + GFF6275 0.30 -0.2
65,571 + GFF6275 0.30 +0.9
65,571 + GFF6275 0.30 +0.3
65,571 + GFF6275 0.30 -1.1
65,571 + GFF6275 0.30 +0.3
65,571 + GFF6275 0.30 -1.3
65,572 - GFF6275 0.30 +0.9
65,572 - GFF6275 0.30 -1.0
65,572 - GFF6275 0.30 +0.3
65,572 - GFF6275 0.30 -1.2
65,572 - GFF6275 0.30 -0.1
65,572 - GFF6275 0.30 -0.3
65,572 - GFF6275 0.30 +0.6
65,727 + GFF6275 0.79 -0.2
65,727 + GFF6275 0.79 +1.9
65,727 + GFF6275 0.79 -1.0
65,727 + GFF6275 0.79 +0.3
65,728 - GFF6275 0.79 -0.7
65,728 - GFF6275 0.79 -0.2
65,728 - GFF6275 0.79 -0.5
65,728 - GFF6275 0.79 +0.2
65,728 - GFF6275 0.79 -0.1
65,728 - GFF6275 0.79 -3.1
65,728 - GFF6275 0.79 +0.5
65,728 - GFF6275 0.79 -0.1
65,748 + GFF6275 0.85 +0.3
65,749 - GFF6275 0.85 -1.2
65,749 - GFF6275 0.85 -1.5
65,749 - GFF6275 0.85 -0.4
66,008 + GFF6276 0.19 -0.6
66,009 - GFF6276 0.19 -0.1
66,029 + GFF6276 0.21 +0.4
66,029 + GFF6276 0.21 +1.3
66,030 - GFF6276 0.21 -0.9
66,030 - GFF6276 0.21 -0.7
66,131 + GFF6276 0.29 +0.1
66,131 + GFF6276 0.29 -0.1
66,132 - GFF6276 0.29 -0.2
66,132 - GFF6276 0.29 +0.1
66,132 - GFF6276 0.29 -0.7
66,263 + GFF6276 0.40 -0.1
66,263 + GFF6276 0.40 -0.6
66,264 - GFF6276 0.40 -1.6
66,264 - GFF6276 0.40 -0.8
66,326 + GFF6276 0.46 -1.3
66,326 + GFF6276 0.46 -0.7
66,326 + GFF6276 0.46 -1.6
66,326 + GFF6276 0.46 +0.2
66,326 + GFF6276 0.46 +0.4
66,326 + GFF6276 0.46 +0.0
66,326 + GFF6276 0.46 -0.5
66,326 + GFF6276 0.46 -1.3
66,326 + GFF6276 0.46 -0.5
66,326 + GFF6276 0.46 -0.8
66,326 + GFF6276 0.46 -0.2
66,327 - GFF6276 0.46 -1.3
66,327 - GFF6276 0.46 +0.1
66,327 - GFF6276 0.46 -0.2
66,327 - GFF6276 0.46 -0.1
66,330 + GFF6276 0.46 -0.3
66,330 + GFF6276 0.46 -0.7
66,330 + GFF6276 0.46 -0.3
66,331 - GFF6276 0.46 +0.7
66,455 + GFF6276 0.56 -0.1
66,455 + GFF6276 0.56 -1.2
66,456 - GFF6276 0.56 -0.6
66,456 - GFF6276 0.56 +0.8

Or see this region's nucleotide sequence