Strain Fitness in Variovorax sp. SCN45 around GFF5986

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5985 and GFF5986 are separated by 77 nucleotidesGFF5986 and GFF5987 are separated by 67 nucleotidesGFF5987 and GFF5988 are separated by 16 nucleotides GFF5985 - dicarboxylic acid transporter PcaT, at 38,855 to 40,090 GFF5985 GFF5986 - hypothetical protein, at 40,168 to 40,761 GFF5986 GFF5987 - Response regulator BaeR, at 40,829 to 41,536 GFF5987 GFF5988 - Sensory histidine kinase BaeS, at 41,553 to 43,034 GFF5988 Position (kb) 40 41Strain fitness (log2 ratio) -2 -1 0 1 2at 39.206 kb on + strand, within GFF5985at 39.224 kb on + strand, within GFF5985at 39.224 kb on + strand, within GFF5985at 39.224 kb on + strand, within GFF5985at 39.224 kb on + strand, within GFF5985at 39.225 kb on - strand, within GFF5985at 39.225 kb on - strand, within GFF5985at 39.578 kb on + strand, within GFF5985at 39.578 kb on + strand, within GFF5985at 39.590 kb on + strand, within GFF5985at 39.632 kb on + strand, within GFF5985at 39.633 kb on - strand, within GFF5985at 39.633 kb on - strand, within GFF5985at 39.633 kb on - strand, within GFF5985at 39.633 kb on - strand, within GFF5985at 39.659 kb on + strand, within GFF5985at 39.660 kb on - strand, within GFF5985at 39.660 kb on - strand, within GFF5985at 39.660 kb on - strand, within GFF5985at 39.660 kb on - strand, within GFF5985at 39.660 kb on - strand, within GFF5985at 39.843 kb on - strand, within GFF5985at 39.843 kb on - strand, within GFF5985at 39.956 kb on + strand, within GFF5985at 40.007 kb on + strandat 40.071 kb on - strandat 40.094 kb on + strandat 40.094 kb on + strandat 40.094 kb on + strandat 40.141 kb on + strandat 40.141 kb on + strandat 40.141 kb on + strandat 40.142 kb on - strandat 40.142 kb on - strandat 40.142 kb on - strandat 40.142 kb on - strandat 40.142 kb on - strandat 40.193 kb on + strandat 40.193 kb on + strandat 40.193 kb on + strandat 40.220 kb on - strandat 40.435 kb on + strand, within GFF5986at 40.633 kb on + strand, within GFF5986at 40.633 kb on + strand, within GFF5986at 40.633 kb on + strand, within GFF5986at 40.633 kb on + strand, within GFF5986at 40.699 kb on - strand, within GFF5986at 40.699 kb on - strand, within GFF5986at 40.699 kb on - strand, within GFF5986at 40.699 kb on - strand, within GFF5986at 40.774 kb on + strandat 40.775 kb on - strandat 40.846 kb on + strandat 40.846 kb on + strandat 40.847 kb on - strandat 40.847 kb on - strandat 41.086 kb on + strand, within GFF5987at 41.086 kb on + strand, within GFF5987at 41.087 kb on - strand, within GFF5987at 41.088 kb on + strand, within GFF5987at 41.088 kb on + strand, within GFF5987at 41.088 kb on + strand, within GFF5987at 41.205 kb on + strand, within GFF5987at 41.205 kb on + strand, within GFF5987at 41.206 kb on - strand, within GFF5987at 41.439 kb on + strand, within GFF5987at 41.439 kb on + strand, within GFF5987at 41.440 kb on - strand, within GFF5987

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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39,206 + GFF5985 0.28 -0.1
39,224 + GFF5985 0.30 +0.4
39,224 + GFF5985 0.30 +0.0
39,224 + GFF5985 0.30 +0.1
39,224 + GFF5985 0.30 -1.9
39,225 - GFF5985 0.30 -0.7
39,225 - GFF5985 0.30 +0.0
39,578 + GFF5985 0.58 +0.7
39,578 + GFF5985 0.58 -1.1
39,590 + GFF5985 0.59 -1.2
39,632 + GFF5985 0.63 +1.7
39,633 - GFF5985 0.63 -0.4
39,633 - GFF5985 0.63 +2.1
39,633 - GFF5985 0.63 +0.8
39,633 - GFF5985 0.63 +0.2
39,659 + GFF5985 0.65 +0.6
39,660 - GFF5985 0.65 -1.7
39,660 - GFF5985 0.65 -0.9
39,660 - GFF5985 0.65 -1.5
39,660 - GFF5985 0.65 +0.1
39,660 - GFF5985 0.65 +0.5
39,843 - GFF5985 0.80 -1.6
39,843 - GFF5985 0.80 +0.1
39,956 + GFF5985 0.89 -0.0
40,007 + -0.3
40,071 - -1.4
40,094 + -1.0
40,094 + +0.6
40,094 + +0.2
40,141 + +1.9
40,141 + -0.1
40,141 + -0.5
40,142 - -0.5
40,142 - +0.5
40,142 - -0.3
40,142 - +1.2
40,142 - +0.0
40,193 + -0.3
40,193 + -0.5
40,193 + +0.8
40,220 - -0.3
40,435 + GFF5986 0.45 -0.8
40,633 + GFF5986 0.78 -0.2
40,633 + GFF5986 0.78 -1.2
40,633 + GFF5986 0.78 -0.4
40,633 + GFF5986 0.78 +0.6
40,699 - GFF5986 0.89 -1.2
40,699 - GFF5986 0.89 -1.0
40,699 - GFF5986 0.89 +0.1
40,699 - GFF5986 0.89 -1.3
40,774 + -0.0
40,775 - +1.2
40,846 + -0.3
40,846 + +1.5
40,847 - +0.1
40,847 - +0.0
41,086 + GFF5987 0.36 +0.4
41,086 + GFF5987 0.36 -0.7
41,087 - GFF5987 0.36 +2.2
41,088 + GFF5987 0.37 +0.1
41,088 + GFF5987 0.37 -0.7
41,088 + GFF5987 0.37 -0.1
41,205 + GFF5987 0.53 -0.5
41,205 + GFF5987 0.53 +2.3
41,206 - GFF5987 0.53 -0.5
41,439 + GFF5987 0.86 -0.9
41,439 + GFF5987 0.86 -0.1
41,440 - GFF5987 0.86 -0.7

Or see this region's nucleotide sequence