Strain Fitness in Variovorax sp. SCN45 around GFF5976

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5974 and GFF5975 are separated by 10 nucleotidesGFF5975 and GFF5976 are separated by 226 nucleotidesGFF5976 and GFF5977 overlap by 29 nucleotidesGFF5977 and GFF5978 are separated by 56 nucleotides GFF5974 - hypothetical protein, at 30,031 to 30,378 GFF5974 GFF5975 - Two-component transcriptional response regulator, LuxR family, at 30,389 to 30,964 GFF5975 GFF5976 - Transcriptional regulator, AraC family, at 31,191 to 32,201 GFF5976 GFF5977 - Lysophospholipase (EC 3.1.1.5); Monoglyceride lipase (EC 3.1.1.23), at 32,173 to 33,060 GFF5977 GFF5978 - Nucleoside 2-deoxyribosyltransferase, at 33,117 to 33,677 GFF5978 Position (kb) 31 32 33Strain fitness (log2 ratio) -2 -1 0 1 2at 30.238 kb on + strand, within GFF5974at 30.239 kb on - strand, within GFF5974at 30.239 kb on - strand, within GFF5974at 30.377 kb on - strandat 30.480 kb on + strand, within GFF5975at 30.480 kb on + strand, within GFF5975at 30.480 kb on + strand, within GFF5975at 30.480 kb on + strand, within GFF5975at 30.481 kb on - strand, within GFF5975at 30.481 kb on - strand, within GFF5975at 30.481 kb on - strand, within GFF5975at 30.523 kb on - strand, within GFF5975at 30.523 kb on - strand, within GFF5975at 30.523 kb on - strand, within GFF5975at 30.523 kb on - strand, within GFF5975at 30.755 kb on - strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.856 kb on - strand, within GFF5975at 30.856 kb on - strand, within GFF5975at 30.856 kb on - strand, within GFF5975at 31.062 kb on + strandat 31.062 kb on + strandat 31.063 kb on - strandat 31.063 kb on - strandat 31.207 kb on + strandat 31.207 kb on + strandat 31.207 kb on + strandat 31.208 kb on - strandat 31.208 kb on - strandat 31.383 kb on + strand, within GFF5976at 31.383 kb on + strand, within GFF5976at 31.902 kb on + strand, within GFF5976at 31.902 kb on + strand, within GFF5976at 31.903 kb on - strand, within GFF5976at 31.903 kb on - strand, within GFF5976at 32.019 kb on + strand, within GFF5976at 32.019 kb on + strand, within GFF5976at 32.019 kb on + strand, within GFF5976at 32.019 kb on + strand, within GFF5976at 32.019 kb on + strand, within GFF5976at 32.019 kb on + strand, within GFF5976at 32.020 kb on - strand, within GFF5976at 32.020 kb on - strand, within GFF5976at 32.020 kb on - strand, within GFF5976at 32.020 kb on - strand, within GFF5976at 32.020 kb on - strand, within GFF5976at 32.020 kb on - strand, within GFF5976at 32.068 kb on - strand, within GFF5976at 32.097 kb on + strand, within GFF5976at 32.098 kb on - strand, within GFF5976at 32.098 kb on - strand, within GFF5976at 32.151 kb on + strandat 32.151 kb on + strandat 32.151 kb on + strandat 32.152 kb on - strandat 32.152 kb on - strandat 32.152 kb on - strandat 32.152 kb on - strandat 32.393 kb on + strand, within GFF5977at 32.393 kb on + strand, within GFF5977at 32.393 kb on + strand, within GFF5977at 32.394 kb on - strand, within GFF5977at 32.394 kb on - strand, within GFF5977at 32.394 kb on - strand, within GFF5977at 32.394 kb on - strand, within GFF5977at 32.394 kb on - strand, within GFF5977at 32.394 kb on - strand, within GFF5977at 32.516 kb on + strand, within GFF5977at 32.516 kb on + strand, within GFF5977at 32.516 kb on + strand, within GFF5977at 32.517 kb on - strand, within GFF5977at 32.517 kb on - strand, within GFF5977at 32.517 kb on - strand, within GFF5977at 32.693 kb on + strand, within GFF5977at 32.693 kb on + strand, within GFF5977at 32.693 kb on + strand, within GFF5977at 32.693 kb on + strand, within GFF5977at 32.693 kb on + strand, within GFF5977at 32.693 kb on + strand, within GFF5977at 32.693 kb on + strand, within GFF5977at 32.693 kb on - strand, within GFF5977at 32.694 kb on - strand, within GFF5977at 32.694 kb on - strand, within GFF5977at 32.694 kb on - strand, within GFF5977at 32.696 kb on + strand, within GFF5977at 32.696 kb on + strand, within GFF5977at 32.697 kb on - strand, within GFF5977at 32.892 kb on - strand, within GFF5977at 32.892 kb on - strand, within GFF5977at 33.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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30,238 + GFF5974 0.59 -0.6
30,239 - GFF5974 0.60 -1.9
30,239 - GFF5974 0.60 +0.4
30,377 - -1.0
30,480 + GFF5975 0.16 +0.9
30,480 + GFF5975 0.16 -0.5
30,480 + GFF5975 0.16 +0.1
30,480 + GFF5975 0.16 +0.9
30,481 - GFF5975 0.16 -0.9
30,481 - GFF5975 0.16 -0.2
30,481 - GFF5975 0.16 +0.7
30,523 - GFF5975 0.23 +0.3
30,523 - GFF5975 0.23 +0.5
30,523 - GFF5975 0.23 -0.0
30,523 - GFF5975 0.23 +0.1
30,755 - GFF5975 0.64 -0.2
30,855 + GFF5975 0.81 +0.1
30,855 + GFF5975 0.81 +1.0
30,855 + GFF5975 0.81 -0.9
30,855 + GFF5975 0.81 -0.3
30,855 + GFF5975 0.81 -0.1
30,855 + GFF5975 0.81 +0.5
30,855 + GFF5975 0.81 +0.1
30,855 + GFF5975 0.81 +0.5
30,855 + GFF5975 0.81 -0.1
30,855 + GFF5975 0.81 -0.2
30,855 + GFF5975 0.81 -1.0
30,855 + GFF5975 0.81 -0.3
30,855 + GFF5975 0.81 -2.1
30,855 + GFF5975 0.81 -0.3
30,856 - GFF5975 0.81 -0.8
30,856 - GFF5975 0.81 +1.7
30,856 - GFF5975 0.81 -0.4
31,062 + +0.0
31,062 + -0.2
31,063 - +0.3
31,063 - -0.6
31,207 + -0.3
31,207 + -0.2
31,207 + +0.5
31,208 - +0.3
31,208 - -0.5
31,383 + GFF5976 0.19 -0.1
31,383 + GFF5976 0.19 +0.7
31,902 + GFF5976 0.70 +0.3
31,902 + GFF5976 0.70 -0.0
31,903 - GFF5976 0.70 +0.9
31,903 - GFF5976 0.70 -0.9
32,019 + GFF5976 0.82 +1.9
32,019 + GFF5976 0.82 -1.4
32,019 + GFF5976 0.82 +0.3
32,019 + GFF5976 0.82 +1.0
32,019 + GFF5976 0.82 +1.1
32,019 + GFF5976 0.82 -0.6
32,020 - GFF5976 0.82 +1.3
32,020 - GFF5976 0.82 -0.5
32,020 - GFF5976 0.82 -0.7
32,020 - GFF5976 0.82 -0.0
32,020 - GFF5976 0.82 +0.1
32,020 - GFF5976 0.82 -0.1
32,068 - GFF5976 0.87 +0.1
32,097 + GFF5976 0.90 -0.1
32,098 - GFF5976 0.90 -0.3
32,098 - GFF5976 0.90 +0.3
32,151 + -0.1
32,151 + -0.3
32,151 + -0.2
32,152 - +0.1
32,152 - +0.4
32,152 - +0.9
32,152 - -1.1
32,393 + GFF5977 0.25 -0.0
32,393 + GFF5977 0.25 +0.2
32,393 + GFF5977 0.25 +0.1
32,394 - GFF5977 0.25 -1.0
32,394 - GFF5977 0.25 -0.3
32,394 - GFF5977 0.25 -1.0
32,394 - GFF5977 0.25 -0.1
32,394 - GFF5977 0.25 -0.2
32,394 - GFF5977 0.25 +0.1
32,516 + GFF5977 0.39 -0.2
32,516 + GFF5977 0.39 +0.8
32,516 + GFF5977 0.39 -0.0
32,517 - GFF5977 0.39 +0.3
32,517 - GFF5977 0.39 +0.4
32,517 - GFF5977 0.39 +0.1
32,693 + GFF5977 0.59 -0.2
32,693 + GFF5977 0.59 -1.5
32,693 + GFF5977 0.59 +0.8
32,693 + GFF5977 0.59 +1.3
32,693 + GFF5977 0.59 -0.3
32,693 + GFF5977 0.59 -0.8
32,693 + GFF5977 0.59 +1.5
32,693 - GFF5977 0.59 +0.4
32,694 - GFF5977 0.59 -1.3
32,694 - GFF5977 0.59 -0.2
32,694 - GFF5977 0.59 +0.1
32,696 + GFF5977 0.59 +1.4
32,696 + GFF5977 0.59 -1.4
32,697 - GFF5977 0.59 -0.0
32,892 - GFF5977 0.81 -0.3
32,892 - GFF5977 0.81 -2.0
33,093 - -0.7

Or see this region's nucleotide sequence