Strain Fitness in Variovorax sp. SCN45 around GFF585

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF584 and GFF585 are separated by 73 nucleotidesGFF585 and GFF586 are separated by 105 nucleotides GFF584 - Tripartite tricarboxylate transporter TctA family, at 631,440 to 633,014 GFF584 GFF585 - no description, at 633,088 to 633,504 GFF585 GFF586 - Pirin, at 633,610 to 634,533 GFF586 Position (kb) 633 634Strain fitness (log2 ratio) -2 -1 0 1 2 3at 632.283 kb on + strand, within GFF584at 632.284 kb on - strand, within GFF584at 632.284 kb on - strand, within GFF584at 632.574 kb on - strand, within GFF584at 632.610 kb on + strand, within GFF584at 632.610 kb on + strand, within GFF584at 632.611 kb on - strand, within GFF584at 632.611 kb on - strand, within GFF584at 632.611 kb on - strand, within GFF584at 632.616 kb on + strand, within GFF584at 632.616 kb on + strand, within GFF584at 632.616 kb on + strand, within GFF584at 632.616 kb on + strand, within GFF584at 632.616 kb on + strand, within GFF584at 632.616 kb on + strand, within GFF584at 632.616 kb on + strand, within GFF584at 632.616 kb on + strand, within GFF584at 632.617 kb on - strand, within GFF584at 632.617 kb on - strand, within GFF584at 632.617 kb on - strand, within GFF584at 632.617 kb on - strand, within GFF584at 632.617 kb on - strand, within GFF584at 632.617 kb on - strand, within GFF584at 632.617 kb on - strand, within GFF584at 632.617 kb on - strand, within GFF584at 632.617 kb on - strand, within GFF584at 632.617 kb on - strand, within GFF584at 632.658 kb on + strand, within GFF584at 632.658 kb on + strand, within GFF584at 632.659 kb on - strand, within GFF584at 632.659 kb on - strand, within GFF584at 632.659 kb on - strand, within GFF584at 632.905 kb on - strandat 633.012 kb on + strandat 633.012 kb on + strandat 633.012 kb on + strandat 633.012 kb on + strandat 633.012 kb on + strandat 633.012 kb on + strandat 633.013 kb on - strandat 633.013 kb on - strandat 633.013 kb on - strandat 633.013 kb on - strandat 633.013 kb on - strandat 633.013 kb on - strandat 633.090 kb on - strandat 633.090 kb on - strandat 633.233 kb on + strand, within GFF585at 633.233 kb on + strand, within GFF585at 633.234 kb on - strand, within GFF585at 633.248 kb on + strand, within GFF585at 633.248 kb on + strand, within GFF585at 633.248 kb on + strand, within GFF585at 633.248 kb on + strand, within GFF585at 633.248 kb on + strand, within GFF585at 633.248 kb on + strand, within GFF585at 633.249 kb on - strand, within GFF585at 633.249 kb on - strand, within GFF585at 633.249 kb on - strand, within GFF585at 633.249 kb on - strand, within GFF585at 633.249 kb on - strand, within GFF585at 633.249 kb on - strand, within GFF585at 633.249 kb on - strand, within GFF585at 633.249 kb on - strand, within GFF585at 633.299 kb on + strand, within GFF585at 633.299 kb on + strand, within GFF585at 633.300 kb on - strand, within GFF585at 633.365 kb on + strand, within GFF585at 633.365 kb on + strand, within GFF585at 633.365 kb on + strand, within GFF585at 633.365 kb on + strand, within GFF585at 633.365 kb on + strand, within GFF585at 633.366 kb on - strand, within GFF585at 633.366 kb on - strand, within GFF585at 633.366 kb on - strand, within GFF585at 633.366 kb on - strand, within GFF585at 633.366 kb on - strand, within GFF585at 633.366 kb on - strand, within GFF585at 633.366 kb on - strand, within GFF585at 633.465 kb on - strandat 633.489 kb on + strandat 633.490 kb on - strandat 633.490 kb on - strandat 633.490 kb on - strandat 633.490 kb on - strandat 633.504 kb on + strandat 633.504 kb on + strandat 633.504 kb on + strandat 633.504 kb on + strandat 633.504 kb on + strandat 633.504 kb on + strandat 633.504 kb on + strandat 633.504 kb on + strandat 633.504 kb on + strandat 633.504 kb on + strandat 633.505 kb on - strandat 633.505 kb on - strandat 633.505 kb on - strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.576 kb on + strandat 633.577 kb on - strandat 633.577 kb on - strandat 633.577 kb on - strandat 633.577 kb on - strandat 633.577 kb on - strandat 633.577 kb on - strandat 633.630 kb on + strandat 633.776 kb on + strand, within GFF586at 633.776 kb on + strand, within GFF586at 633.776 kb on + strand, within GFF586at 633.776 kb on + strand, within GFF586at 633.776 kb on + strand, within GFF586at 633.777 kb on - strand, within GFF586at 633.777 kb on - strand, within GFF586at 633.777 kb on - strand, within GFF586at 633.777 kb on - strand, within GFF586at 633.777 kb on - strand, within GFF586at 633.926 kb on + strand, within GFF586at 633.926 kb on + strand, within GFF586at 633.927 kb on - strand, within GFF586at 633.927 kb on - strand, within GFF586at 633.995 kb on + strand, within GFF586at 633.995 kb on + strand, within GFF586at 633.995 kb on + strand, within GFF586at 633.996 kb on - strand, within GFF586at 634.181 kb on + strand, within GFF586at 634.181 kb on + strand, within GFF586at 634.181 kb on + strand, within GFF586at 634.181 kb on + strand, within GFF586at 634.182 kb on - strand, within GFF586at 634.182 kb on - strand, within GFF586at 634.182 kb on - strand, within GFF586at 634.182 kb on - strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.323 kb on - strand, within GFF586at 634.323 kb on - strand, within GFF586at 634.323 kb on - strand, within GFF586at 634.323 kb on - strand, within GFF586at 634.323 kb on - strand, within GFF586

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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632,283 + GFF584 0.54 -0.1
632,284 - GFF584 0.54 -0.4
632,284 - GFF584 0.54 -1.6
632,574 - GFF584 0.72 -0.5
632,610 + GFF584 0.74 -1.6
632,610 + GFF584 0.74 +0.3
632,611 - GFF584 0.74 -0.6
632,611 - GFF584 0.74 -0.9
632,611 - GFF584 0.74 -1.5
632,616 + GFF584 0.75 -0.6
632,616 + GFF584 0.75 +0.0
632,616 + GFF584 0.75 +0.6
632,616 + GFF584 0.75 -1.6
632,616 + GFF584 0.75 -0.5
632,616 + GFF584 0.75 -0.3
632,616 + GFF584 0.75 -0.9
632,616 + GFF584 0.75 +0.7
632,617 - GFF584 0.75 +0.2
632,617 - GFF584 0.75 -0.2
632,617 - GFF584 0.75 -0.5
632,617 - GFF584 0.75 -2.1
632,617 - GFF584 0.75 -1.4
632,617 - GFF584 0.75 -1.3
632,617 - GFF584 0.75 -1.6
632,617 - GFF584 0.75 +0.7
632,617 - GFF584 0.75 +0.4
632,617 - GFF584 0.75 -2.0
632,658 + GFF584 0.77 -1.5
632,658 + GFF584 0.77 -1.0
632,659 - GFF584 0.77 -0.3
632,659 - GFF584 0.77 -0.2
632,659 - GFF584 0.77 +0.1
632,905 - +0.2
633,012 + +0.2
633,012 + +0.9
633,012 + -2.1
633,012 + +0.1
633,012 + +0.4
633,012 + +0.6
633,013 - -0.2
633,013 - -0.6
633,013 - -0.7
633,013 - +2.1
633,013 - -0.0
633,013 - -0.8
633,090 - -1.2
633,090 - -1.2
633,233 + GFF585 0.35 +0.1
633,233 + GFF585 0.35 -0.6
633,234 - GFF585 0.35 +1.2
633,248 + GFF585 0.38 -1.4
633,248 + GFF585 0.38 +0.4
633,248 + GFF585 0.38 +0.0
633,248 + GFF585 0.38 +1.0
633,248 + GFF585 0.38 +0.4
633,248 + GFF585 0.38 -0.1
633,249 - GFF585 0.39 +0.6
633,249 - GFF585 0.39 +0.4
633,249 - GFF585 0.39 -1.6
633,249 - GFF585 0.39 +0.5
633,249 - GFF585 0.39 -0.3
633,249 - GFF585 0.39 +0.7
633,249 - GFF585 0.39 -0.2
633,249 - GFF585 0.39 -0.1
633,299 + GFF585 0.51 -0.6
633,299 + GFF585 0.51 +0.5
633,300 - GFF585 0.51 +0.2
633,365 + GFF585 0.66 -0.3
633,365 + GFF585 0.66 -1.1
633,365 + GFF585 0.66 +1.6
633,365 + GFF585 0.66 +0.7
633,365 + GFF585 0.66 -0.1
633,366 - GFF585 0.67 -0.7
633,366 - GFF585 0.67 -0.2
633,366 - GFF585 0.67 +0.3
633,366 - GFF585 0.67 -1.6
633,366 - GFF585 0.67 +0.2
633,366 - GFF585 0.67 -1.2
633,366 - GFF585 0.67 -0.2
633,465 - -0.2
633,489 + -1.4
633,490 - +0.3
633,490 - +1.0
633,490 - -0.9
633,490 - +0.5
633,504 + +0.4
633,504 + +1.0
633,504 + -1.2
633,504 + -1.2
633,504 + +0.4
633,504 + -0.6
633,504 + -0.4
633,504 + -0.4
633,504 + +0.2
633,504 + -0.8
633,505 - -1.3
633,505 - -0.2
633,505 - -0.0
633,576 + -0.9
633,576 + +1.0
633,576 + +0.9
633,576 + -0.4
633,576 + -0.4
633,576 + +0.2
633,576 + -0.6
633,576 + -2.4
633,576 + -0.4
633,576 + -1.2
633,576 + +0.1
633,576 + -0.2
633,576 + +0.0
633,577 - +3.7
633,577 - +0.8
633,577 - -0.4
633,577 - +0.0
633,577 - +1.4
633,577 - +0.1
633,630 + -2.4
633,776 + GFF586 0.18 -1.3
633,776 + GFF586 0.18 +0.3
633,776 + GFF586 0.18 -0.7
633,776 + GFF586 0.18 -0.1
633,776 + GFF586 0.18 +0.7
633,777 - GFF586 0.18 -0.6
633,777 - GFF586 0.18 -1.0
633,777 - GFF586 0.18 +1.1
633,777 - GFF586 0.18 -0.2
633,777 - GFF586 0.18 +0.6
633,926 + GFF586 0.34 -2.1
633,926 + GFF586 0.34 -1.4
633,927 - GFF586 0.34 -0.8
633,927 - GFF586 0.34 +0.0
633,995 + GFF586 0.42 +0.5
633,995 + GFF586 0.42 -0.7
633,995 + GFF586 0.42 -1.1
633,996 - GFF586 0.42 -0.4
634,181 + GFF586 0.62 -0.0
634,181 + GFF586 0.62 +0.1
634,181 + GFF586 0.62 +0.5
634,181 + GFF586 0.62 -1.6
634,182 - GFF586 0.62 -0.4
634,182 - GFF586 0.62 -1.1
634,182 - GFF586 0.62 +0.9
634,182 - GFF586 0.62 -0.5
634,322 + GFF586 0.77 -0.3
634,322 + GFF586 0.77 +0.4
634,322 + GFF586 0.77 -0.5
634,322 + GFF586 0.77 -0.8
634,322 + GFF586 0.77 -1.2
634,322 + GFF586 0.77 +0.7
634,322 + GFF586 0.77 -1.4
634,322 + GFF586 0.77 -1.4
634,323 - GFF586 0.77 -0.3
634,323 - GFF586 0.77 -0.1
634,323 - GFF586 0.77 -0.0
634,323 - GFF586 0.77 -0.8
634,323 - GFF586 0.77 -0.5

Or see this region's nucleotide sequence