Strain Fitness in Variovorax sp. SCN45 around GFF5257

Experiment: M9 with Supernatant from Cyptococcus

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus
121,791	+		GFF5256	0.29	-0.2
121,791	+		GFF5256	0.29	+1.0
121,792	-		GFF5256	0.30	+1.4
121,792	-		GFF5256	0.30	-0.3
121,792	-		GFF5256	0.30	-1.3
121,792	-		GFF5256	0.30	-0.5
122,018	+		GFF5256	0.51	-1.4
122,157	+		GFF5256	0.64	-0.2
122,157	+		GFF5256	0.64	-0.2
122,157	+		GFF5256	0.64	-0.9
122,157	+		GFF5256	0.64	-0.2
122,157	+		GFF5256	0.64	-1.0
122,157	+		GFF5256	0.64	-0.7
122,157	+		GFF5256	0.64	-1.3
122,157	+		GFF5256	0.64	+0.5
122,157	+		GFF5256	0.64	-0.3
122,157	+		GFF5256	0.64	+0.0
122,157	+		GFF5256	0.64	-0.9
122,157	+		GFF5256	0.64	+1.0
122,157	+		GFF5256	0.64	+0.6
122,157	+		GFF5256	0.64	+0.8
122,157	+		GFF5256	0.64	+1.1
122,157	+		GFF5256	0.64	-1.3
122,157	+		GFF5256	0.64	-0.1
122,158	-		GFF5256	0.64	+1.0
122,158	-		GFF5256	0.64	-0.0
122,158	-		GFF5256	0.64	-0.7
122,158	-		GFF5256	0.64	+1.6
122,158	-		GFF5256	0.64	+0.1
122,158	-		GFF5256	0.64	+1.0
122,158	-		GFF5256	0.64	-0.2
122,158	-		GFF5256	0.64	-1.8
122,158	-		GFF5256	0.64	-0.0
122,220	+		GFF5256	0.69	+0.8
122,220	+		GFF5256	0.69	+0.0
122,220	+		GFF5256	0.69	+0.2
122,221	-		GFF5256	0.70	-1.2
122,221	-		GFF5256	0.70	-0.6
122,221	-		GFF5256	0.70	+0.1
122,331	+		GFF5256	0.80	+0.4
122,331	+		GFF5256	0.80	+0.0
122,331	+		GFF5256	0.80	+0.2
122,331	+		GFF5256	0.80	-1.0
122,331	+		GFF5256	0.80	+0.2
122,332	-		GFF5256	0.80	-0.9
122,332	-		GFF5256	0.80	+0.0
122,332	-		GFF5256	0.80	-0.7
122,332	-		GFF5256	0.80	-0.2
122,332	-		GFF5256	0.80	-0.8
122,332	-		GFF5256	0.80	-0.8
122,795	+		GFF5257	0.24	+0.0
122,795	+		GFF5257	0.24	+0.6
122,795	+		GFF5257	0.24	-0.5
122,795	+		GFF5257	0.24	-1.7
122,795	+		GFF5257	0.24	+0.9
122,796	-		GFF5257	0.24	+0.8
122,796	-		GFF5257	0.24	+2.1
122,796	-		GFF5257	0.24	+0.4
122,796	-		GFF5257	0.24	+1.5
122,909	+		GFF5257	0.35	-0.1
122,910	-		GFF5257	0.35	+0.3
123,059	+		GFF5257	0.50	-0.2
123,059	+		GFF5257	0.50	-0.5
123,059	+		GFF5257	0.50	+2.1
123,060	-		GFF5257	0.50	-0.2
123,060	-		GFF5257	0.50	-0.9
123,060	-		GFF5257	0.50	-1.0
123,060	-		GFF5257	0.50	-0.2
123,230	+		GFF5257	0.66	-0.0
123,230	+		GFF5257	0.66	+0.5
123,230	+		GFF5257	0.66	+0.2
123,231	-		GFF5257	0.66	-0.9
123,231	-		GFF5257	0.66	-1.3
123,231	-		GFF5257	0.66	-0.5
123,231	-		GFF5257	0.66	-1.0
123,231	-		GFF5257	0.66	-0.3
123,231	-		GFF5257	0.66	-0.2
123,293	+		GFF5257	0.72	-0.3
123,293	+		GFF5257	0.72	-0.0
123,293	+		GFF5257	0.72	-1.8
123,293	+		GFF5257	0.72	+0.3
123,293	+		GFF5257	0.72	-0.3
123,293	+		GFF5257	0.72	+2.4
123,294	-		GFF5257	0.72	+1.4
123,294	-		GFF5257	0.72	+0.6
123,294	-		GFF5257	0.72	+0.1
123,294	-		GFF5257	0.72	+0.6
123,294	-		GFF5257	0.72	-0.9
123,294	-		GFF5257	0.72	-1.0
123,294	-		GFF5257	0.72	+1.2
123,356	+		GFF5257	0.78	-0.2
123,357	-		GFF5257	0.78	+2.0
123,357	-		GFF5257	0.78	-1.1
123,578	+				+0.0
123,592	-				+0.0
123,627	+				-0.2
123,627	+				+0.4
123,627	+				+2.0
123,627	+				-0.8
123,628	-				-0.4
123,628	-				+1.4
123,629	+				-0.1
123,629	+				-0.9
123,629	+				-0.2
123,629	+				-2.2
123,630	-				-0.0
123,630	-				+0.1
123,630	-				+1.0
123,726	+		GFF5258	0.28	+0.7
123,727	-		GFF5258	0.29	-0.2
123,768	+		GFF5258	0.52	-0.1
123,768	+		GFF5258	0.52	-0.7
123,768	+		GFF5258	0.52	+1.3
123,768	+		GFF5258	0.52	+0.0
123,768	+		GFF5258	0.52	-0.3
123,769	-		GFF5258	0.52	+0.1
123,769	-		GFF5258	0.52	-0.5
123,769	-		GFF5258	0.52	-1.1
123,774	+		GFF5258	0.55	-0.0
123,774	+		GFF5258	0.55	+0.0
123,774	+		GFF5258	0.55	+0.3
123,774	+		GFF5258	0.55	+1.3
123,775	-		GFF5258	0.56	+0.1
123,775	-		GFF5258	0.56	+0.8
123,775	-		GFF5258	0.56	+0.4
123,823	-		GFF5258	0.82	+0.5
123,834	+		GFF5258	0.88	-0.6
123,835	-		GFF5258	0.89	-1.2
124,049	+		GFF5259	0.13	+0.7
124,050	-		GFF5259	0.13	+0.2
124,050	-		GFF5259	0.13	-0.0
124,050	-		GFF5259	0.13	+0.5
124,058	+		GFF5259	0.14	-1.2
124,058	+		GFF5259	0.14	-0.1
124,059	-		GFF5259	0.14	+0.2
124,059	-		GFF5259	0.14	-0.2
124,059	-		GFF5259	0.14	+1.3
124,059	-		GFF5259	0.14	+0.2
124,088	+		GFF5259	0.16	-0.8
124,089	-		GFF5259	0.16	+0.3
124,103	+		GFF5259	0.17	-0.2
124,103	+		GFF5259	0.17	+1.0
124,103	+		GFF5259	0.17	-0.2
124,124	+		GFF5259	0.18	+0.6
124,125	-		GFF5259	0.18	-0.3
124,125	-		GFF5259	0.18	-0.4
124,125	-		GFF5259	0.18	+0.7
124,125	-		GFF5259	0.18	-0.3
124,125	-		GFF5259	0.18	-0.2
124,125	-		GFF5259	0.18	+0.1
124,220	+		GFF5259	0.24	+1.1
124,221	-		GFF5259	0.24	-0.9
124,289	+		GFF5259	0.29	+0.7
124,289	+		GFF5259	0.29	+0.3
124,289	+		GFF5259	0.29	-0.6
124,289	+		GFF5259	0.29	+1.6
124,289	+		GFF5259	0.29	-0.8
124,289	+		GFF5259	0.29	-0.4
124,290	-		GFF5259	0.29	+0.2
124,290	-		GFF5259	0.29	+0.3
124,290	-		GFF5259	0.29	-1.3
124,290	-		GFF5259	0.29	-1.2
124,290	-		GFF5259	0.29	-0.7
124,290	-		GFF5259	0.29	+1.6
124,290	-		GFF5259	0.29	-0.7
124,290	-		GFF5259	0.29	-0.3
124,388	+		GFF5259	0.35	+0.8
124,388	+		GFF5259	0.35	-0.0
124,388	+		GFF5259	0.35	-0.8
124,389	-		GFF5259	0.36	+1.0
124,389	-		GFF5259	0.36	-1.0
124,394	+		GFF5259	0.36	-0.9
124,394	+		GFF5259	0.36	-1.1
124,394	+		GFF5259	0.36	-1.2
124,395	-		GFF5259	0.36	+0.1
124,395	-		GFF5259	0.36	+0.6
124,451	+		GFF5259	0.40	-0.0
124,451	+		GFF5259	0.40	+0.5
124,451	+		GFF5259	0.40	-1.5
124,451	+		GFF5259	0.40	-0.2
124,451	+		GFF5259	0.40	+0.6
124,452	-		GFF5259	0.40	-0.0
124,452	-		GFF5259	0.40	-0.3
124,452	-		GFF5259	0.40	-0.4
124,452	-		GFF5259	0.40	+0.4
124,452	-		GFF5259	0.40	-0.6
124,452	-		GFF5259	0.40	-0.2
124,452	-		GFF5259	0.40	+0.5
124,452	-		GFF5259	0.40	-0.4
124,452	-		GFF5259	0.40	+0.6
124,452	-		GFF5259	0.40	-0.4
124,452	-		GFF5259	0.40	+0.1
124,452	-		GFF5259	0.40	+0.1
124,452	-		GFF5259	0.40	+0.2