Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF518 and GFF519 are separated by 145 nucleotides GFF519 and GFF520 overlap by 4 nucleotides
GFF518 - Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains, at 556,972 to 558,504
GFF518
GFF519 - Transcriptional regulator, AcrR family, at 558,650 to 559,345
GFF519
GFF520 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 559,342 to 560,868
GFF520
Position (kb) 558
559
560 Strain fitness (log2 ratio) -2
-1
0
1
2 at 557.957 kb on + strand, within GFF518 at 557.957 kb on + strand, within GFF518 at 557.957 kb on + strand, within GFF518 at 557.957 kb on + strand, within GFF518 at 557.957 kb on + strand, within GFF518 at 557.957 kb on + strand, within GFF518 at 557.958 kb on - strand, within GFF518 at 557.958 kb on - strand, within GFF518 at 557.958 kb on - strand, within GFF518 at 557.958 kb on - strand, within GFF518 at 557.993 kb on + strand, within GFF518 at 557.994 kb on - strand, within GFF518 at 558.364 kb on + strand at 558.364 kb on + strand at 558.364 kb on + strand at 558.364 kb on + strand at 558.365 kb on - strand at 558.365 kb on - strand at 558.515 kb on + strand at 558.516 kb on - strand at 558.516 kb on - strand at 558.582 kb on - strand at 558.606 kb on - strand at 558.606 kb on - strand at 558.606 kb on - strand at 558.639 kb on + strand at 558.639 kb on + strand at 558.827 kb on + strand, within GFF519 at 558.828 kb on - strand, within GFF519 at 558.828 kb on - strand, within GFF519 at 558.828 kb on - strand, within GFF519 at 558.830 kb on + strand, within GFF519 at 558.830 kb on + strand, within GFF519 at 558.830 kb on + strand, within GFF519 at 558.830 kb on + strand, within GFF519 at 558.830 kb on + strand, within GFF519 at 558.831 kb on - strand, within GFF519 at 558.831 kb on - strand, within GFF519 at 558.831 kb on - strand, within GFF519 at 558.831 kb on - strand, within GFF519 at 558.855 kb on - strand, within GFF519 at 558.949 kb on + strand, within GFF519 at 558.949 kb on + strand, within GFF519 at 558.950 kb on - strand, within GFF519 at 558.950 kb on - strand, within GFF519 at 558.950 kb on - strand, within GFF519 at 558.950 kb on - strand, within GFF519 at 558.950 kb on - strand, within GFF519 at 559.190 kb on + strand, within GFF519 at 559.191 kb on - strand, within GFF519 at 559.191 kb on - strand, within GFF519 at 559.191 kb on - strand, within GFF519 at 559.191 kb on - strand, within GFF519 at 559.191 kb on - strand, within GFF519 at 559.191 kb on - strand, within GFF519 at 559.191 kb on - strand, within GFF519 at 559.734 kb on + strand, within GFF520 at 559.734 kb on + strand, within GFF520 at 559.734 kb on + strand, within GFF520 at 559.734 kb on + strand, within GFF520 at 559.735 kb on - strand, within GFF520 at 559.735 kb on - strand, within GFF520 at 559.918 kb on + strand, within GFF520 at 559.918 kb on + strand, within GFF520 at 560.260 kb on + strand, within GFF520 at 560.261 kb on - strand, within GFF520 at 560.261 kb on - strand, within GFF520 at 560.261 kb on - strand, within GFF520 at 560.261 kb on - strand, within GFF520 at 560.261 kb on - strand, within GFF520
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 557,957 + GFF518 0.64 +0.8 557,957 + GFF518 0.64 -0.2 557,957 + GFF518 0.64 -1.1 557,957 + GFF518 0.64 +0.9 557,957 + GFF518 0.64 +0.8 557,957 + GFF518 0.64 +0.5 557,958 - GFF518 0.64 -0.9 557,958 - GFF518 0.64 -0.3 557,958 - GFF518 0.64 -0.4 557,958 - GFF518 0.64 +1.9 557,993 + GFF518 0.67 -1.2 557,994 - GFF518 0.67 -0.2 558,364 + +0.5 558,364 + +0.1 558,364 + -0.4 558,364 + -0.4 558,365 - -0.7 558,365 - +0.3 558,515 + +0.2 558,516 - -2.1 558,516 - -0.4 558,582 - +1.0 558,606 - -2.3 558,606 - +0.2 558,606 - +0.2 558,639 + -1.4 558,639 + -1.4 558,827 + GFF519 0.25 -1.2 558,828 - GFF519 0.26 +1.2 558,828 - GFF519 0.26 +0.0 558,828 - GFF519 0.26 +0.6 558,830 + GFF519 0.26 +0.4 558,830 + GFF519 0.26 +0.7 558,830 + GFF519 0.26 -0.2 558,830 + GFF519 0.26 +0.1 558,830 + GFF519 0.26 +0.9 558,831 - GFF519 0.26 +0.4 558,831 - GFF519 0.26 +1.0 558,831 - GFF519 0.26 +1.8 558,831 - GFF519 0.26 -0.8 558,855 - GFF519 0.29 -0.3 558,949 + GFF519 0.43 -1.6 558,949 + GFF519 0.43 -0.0 558,950 - GFF519 0.43 -0.5 558,950 - GFF519 0.43 +1.6 558,950 - GFF519 0.43 +0.2 558,950 - GFF519 0.43 +0.2 558,950 - GFF519 0.43 -0.2 559,190 + GFF519 0.78 +0.1 559,191 - GFF519 0.78 +0.4 559,191 - GFF519 0.78 -1.1 559,191 - GFF519 0.78 -0.5 559,191 - GFF519 0.78 -0.6 559,191 - GFF519 0.78 -0.0 559,191 - GFF519 0.78 +1.4 559,191 - GFF519 0.78 -0.5 559,734 + GFF520 0.26 -0.5 559,734 + GFF520 0.26 +0.1 559,734 + GFF520 0.26 -0.2 559,734 + GFF520 0.26 -2.1 559,735 - GFF520 0.26 -0.4 559,735 - GFF520 0.26 -0.6 559,918 + GFF520 0.38 -0.0 559,918 + GFF520 0.38 -0.5 560,260 + GFF520 0.60 -1.4 560,261 - GFF520 0.60 -0.3 560,261 - GFF520 0.60 +0.2 560,261 - GFF520 0.60 +1.4 560,261 - GFF520 0.60 -0.9 560,261 - GFF520 0.60 +0.4
Or see this region's nucleotide sequence