Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5102 and GFF5103 are separated by 19 nucleotides GFF5103 and GFF5104 are separated by 13 nucleotides GFF5104 and GFF5105 are separated by 95 nucleotides
GFF5102 - BUG/TctC family periplasmic protein, at 203,645 to 204,640
GFF5102
GFF5103 - Class II aldolase/adducin, N-terminal, at 204,660 to 205,451
GFF5103
GFF5104 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 205,465 to 206,454
GFF5104
GFF5105 - Transcriptional regulator, MerR family, at 206,550 to 207,563
GFF5105
Position (kb) 205
206
207 Strain fitness (log2 ratio) -1
0
1 at 204.753 kb on + strand, within GFF5103 at 204.792 kb on + strand, within GFF5103 at 204.792 kb on + strand, within GFF5103 at 204.792 kb on + strand, within GFF5103 at 204.792 kb on + strand, within GFF5103 at 204.792 kb on + strand, within GFF5103 at 204.792 kb on + strand, within GFF5103 at 204.793 kb on - strand, within GFF5103 at 204.793 kb on - strand, within GFF5103 at 204.793 kb on - strand, within GFF5103 at 204.793 kb on - strand, within GFF5103 at 204.793 kb on - strand, within GFF5103 at 204.793 kb on - strand, within GFF5103 at 204.793 kb on - strand, within GFF5103 at 204.873 kb on + strand, within GFF5103 at 204.873 kb on + strand, within GFF5103 at 204.873 kb on + strand, within GFF5103 at 204.873 kb on + strand, within GFF5103 at 204.873 kb on + strand, within GFF5103 at 204.874 kb on - strand, within GFF5103 at 204.874 kb on - strand, within GFF5103 at 204.874 kb on - strand, within GFF5103 at 204.874 kb on - strand, within GFF5103 at 204.874 kb on - strand, within GFF5103 at 205.084 kb on - strand, within GFF5103 at 205.084 kb on - strand, within GFF5103 at 205.084 kb on - strand, within GFF5103 at 205.113 kb on + strand, within GFF5103 at 205.113 kb on + strand, within GFF5103 at 205.440 kb on + strand at 205.441 kb on - strand at 205.441 kb on - strand at 205.480 kb on + strand at 205.480 kb on + strand at 205.481 kb on - strand at 205.481 kb on - strand at 206.167 kb on + strand, within GFF5104 at 206.168 kb on - strand, within GFF5104 at 206.168 kb on - strand, within GFF5104 at 206.449 kb on + strand at 206.449 kb on + strand at 206.449 kb on + strand at 206.450 kb on - strand at 206.450 kb on - strand at 206.450 kb on - strand at 206.450 kb on - strand at 206.450 kb on - strand at 206.631 kb on + strand at 206.631 kb on + strand at 206.632 kb on - strand at 206.632 kb on - strand at 206.632 kb on - strand at 206.685 kb on + strand, within GFF5105 at 206.685 kb on + strand, within GFF5105 at 206.686 kb on - strand, within GFF5105 at 207.024 kb on + strand, within GFF5105 at 207.024 kb on + strand, within GFF5105 at 207.024 kb on + strand, within GFF5105 at 207.024 kb on + strand, within GFF5105 at 207.024 kb on + strand, within GFF5105 at 207.024 kb on + strand, within GFF5105 at 207.024 kb on + strand, within GFF5105 at 207.024 kb on + strand, within GFF5105 at 207.024 kb on + strand, within GFF5105 at 207.024 kb on + strand, within GFF5105 at 207.025 kb on - strand, within GFF5105 at 207.025 kb on - strand, within GFF5105 at 207.025 kb on - strand, within GFF5105 at 207.025 kb on - strand, within GFF5105
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 204,753 + GFF5103 0.12 +0.5 204,792 + GFF5103 0.17 -0.7 204,792 + GFF5103 0.17 -1.0 204,792 + GFF5103 0.17 -0.4 204,792 + GFF5103 0.17 +1.3 204,792 + GFF5103 0.17 +0.5 204,792 + GFF5103 0.17 -0.2 204,793 - GFF5103 0.17 +0.9 204,793 - GFF5103 0.17 -0.3 204,793 - GFF5103 0.17 -1.7 204,793 - GFF5103 0.17 +0.6 204,793 - GFF5103 0.17 +0.5 204,793 - GFF5103 0.17 -0.4 204,793 - GFF5103 0.17 -0.0 204,873 + GFF5103 0.27 -0.7 204,873 + GFF5103 0.27 -0.4 204,873 + GFF5103 0.27 -1.6 204,873 + GFF5103 0.27 -1.0 204,873 + GFF5103 0.27 -0.0 204,874 - GFF5103 0.27 -0.9 204,874 - GFF5103 0.27 +0.7 204,874 - GFF5103 0.27 -0.1 204,874 - GFF5103 0.27 +1.5 204,874 - GFF5103 0.27 -0.3 205,084 - GFF5103 0.54 -0.8 205,084 - GFF5103 0.54 +0.1 205,084 - GFF5103 0.54 -0.4 205,113 + GFF5103 0.57 -0.2 205,113 + GFF5103 0.57 +0.2 205,440 + -0.9 205,441 - -0.8 205,441 - -0.6 205,480 + -0.5 205,480 + +1.1 205,481 - -0.5 205,481 - -1.1 206,167 + GFF5104 0.71 -0.4 206,168 - GFF5104 0.71 -1.1 206,168 - GFF5104 0.71 -0.6 206,449 + -0.1 206,449 + -0.4 206,449 + +0.2 206,450 - -0.2 206,450 - -0.5 206,450 - +1.6 206,450 - +0.1 206,450 - -1.0 206,631 + +0.8 206,631 + -0.4 206,632 - +0.0 206,632 - +0.7 206,632 - -0.6 206,685 + GFF5105 0.13 +0.5 206,685 + GFF5105 0.13 -1.6 206,686 - GFF5105 0.13 -0.0 207,024 + GFF5105 0.47 +0.6 207,024 + GFF5105 0.47 -0.6 207,024 + GFF5105 0.47 +0.3 207,024 + GFF5105 0.47 -1.0 207,024 + GFF5105 0.47 +1.2 207,024 + GFF5105 0.47 -0.4 207,024 + GFF5105 0.47 +0.8 207,024 + GFF5105 0.47 -1.6 207,024 + GFF5105 0.47 -1.1 207,024 + GFF5105 0.47 -1.5 207,025 - GFF5105 0.47 +0.0 207,025 - GFF5105 0.47 +0.9 207,025 - GFF5105 0.47 +1.1 207,025 - GFF5105 0.47 -0.5
Or see this region's nucleotide sequence