Strain Fitness in Variovorax sp. SCN45 around GFF4733

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4731 and GFF4732 are separated by 48 nucleotidesGFF4732 and GFF4733 are separated by 9 nucleotidesGFF4733 and GFF4734 overlap by 4 nucleotides GFF4731 - Assimilatory nitrate reductase large subunit (EC 1.7.99.4), at 94,717 to 97,509 GFF4731 GFF4732 - Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4), at 97,558 to 97,953 GFF4732 GFF4733 - Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family), at 97,963 to 98,754 GFF4733 GFF4734 - Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4), at 98,751 to 101,219 GFF4734 Position (kb) 97 98 99Strain fitness (log2 ratio) -2 -1 0 1 2 3at 97.029 kb on - strand, within GFF4731at 97.067 kb on + strand, within GFF4731at 97.068 kb on - strand, within GFF4731at 97.157 kb on + strand, within GFF4731at 97.157 kb on + strand, within GFF4731at 97.157 kb on + strand, within GFF4731at 97.158 kb on - strand, within GFF4731at 97.158 kb on - strand, within GFF4731at 97.158 kb on - strand, within GFF4731at 97.160 kb on + strand, within GFF4731at 97.160 kb on + strand, within GFF4731at 97.160 kb on + strand, within GFF4731at 97.160 kb on + strand, within GFF4731at 97.160 kb on + strand, within GFF4731at 97.160 kb on + strand, within GFF4731at 97.161 kb on - strand, within GFF4731at 97.161 kb on - strand, within GFF4731at 97.161 kb on - strand, within GFF4731at 97.161 kb on - strand, within GFF4731at 97.161 kb on - strand, within GFF4731at 97.161 kb on - strand, within GFF4731at 97.190 kb on + strand, within GFF4731at 97.191 kb on - strand, within GFF4731at 97.481 kb on + strandat 97.560 kb on - strandat 97.964 kb on + strandat 97.964 kb on + strandat 97.965 kb on - strandat 97.965 kb on - strandat 97.965 kb on - strandat 97.965 kb on - strandat 97.982 kb on + strandat 97.983 kb on - strandat 98.258 kb on + strand, within GFF4733at 98.259 kb on - strand, within GFF4733at 98.345 kb on + strand, within GFF4733at 98.480 kb on + strand, within GFF4733at 98.481 kb on - strand, within GFF4733at 98.609 kb on + strand, within GFF4733at 98.609 kb on + strand, within GFF4733at 98.610 kb on - strand, within GFF4733at 98.610 kb on - strand, within GFF4733at 98.921 kb on - strandat 98.944 kb on + strandat 98.944 kb on + strandat 98.944 kb on + strandat 98.945 kb on - strandat 98.945 kb on - strandat 98.965 kb on + strandat 98.966 kb on - strandat 99.007 kb on + strand, within GFF4734at 99.008 kb on - strand, within GFF4734at 99.008 kb on - strand, within GFF4734at 99.084 kb on + strand, within GFF4734at 99.084 kb on + strand, within GFF4734at 99.085 kb on - strand, within GFF4734at 99.088 kb on + strand, within GFF4734at 99.088 kb on + strand, within GFF4734at 99.088 kb on + strand, within GFF4734at 99.088 kb on + strand, within GFF4734at 99.088 kb on + strand, within GFF4734at 99.088 kb on + strand, within GFF4734at 99.089 kb on - strand, within GFF4734at 99.089 kb on - strand, within GFF4734at 99.196 kb on + strand, within GFF4734at 99.196 kb on + strand, within GFF4734at 99.197 kb on - strand, within GFF4734at 99.311 kb on - strand, within GFF4734at 99.424 kb on + strand, within GFF4734at 99.502 kb on + strand, within GFF4734at 99.502 kb on + strand, within GFF4734at 99.502 kb on + strand, within GFF4734at 99.502 kb on + strand, within GFF4734at 99.503 kb on - strand, within GFF4734at 99.503 kb on - strand, within GFF4734at 99.598 kb on + strand, within GFF4734at 99.598 kb on + strand, within GFF4734at 99.599 kb on - strand, within GFF4734at 99.601 kb on + strand, within GFF4734at 99.601 kb on + strand, within GFF4734at 99.601 kb on + strand, within GFF4734at 99.601 kb on + strand, within GFF4734at 99.601 kb on + strand, within GFF4734at 99.601 kb on + strand, within GFF4734at 99.601 kb on + strand, within GFF4734at 99.602 kb on - strand, within GFF4734at 99.602 kb on - strand, within GFF4734at 99.682 kb on + strand, within GFF4734at 99.682 kb on + strand, within GFF4734

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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97,029 - GFF4731 0.83 -0.4
97,067 + GFF4731 0.84 +0.3
97,068 - GFF4731 0.84 -0.2
97,157 + GFF4731 0.87 -0.5
97,157 + GFF4731 0.87 -2.0
97,157 + GFF4731 0.87 +0.7
97,158 - GFF4731 0.87 -0.0
97,158 - GFF4731 0.87 -0.0
97,158 - GFF4731 0.87 -2.4
97,160 + GFF4731 0.87 -0.8
97,160 + GFF4731 0.87 -0.1
97,160 + GFF4731 0.87 +0.4
97,160 + GFF4731 0.87 -0.1
97,160 + GFF4731 0.87 -0.4
97,160 + GFF4731 0.87 +0.4
97,161 - GFF4731 0.88 -1.4
97,161 - GFF4731 0.88 +1.3
97,161 - GFF4731 0.88 -0.2
97,161 - GFF4731 0.88 +0.7
97,161 - GFF4731 0.88 -0.7
97,161 - GFF4731 0.88 +1.6
97,190 + GFF4731 0.89 -1.0
97,191 - GFF4731 0.89 -1.2
97,481 + -0.2
97,560 - -0.4
97,964 + -1.1
97,964 + -1.4
97,965 - -0.5
97,965 - +0.5
97,965 - +1.2
97,965 - -0.7
97,982 + +0.4
97,983 - -0.1
98,258 + GFF4733 0.37 -0.6
98,259 - GFF4733 0.37 -0.5
98,345 + GFF4733 0.48 -0.4
98,480 + GFF4733 0.65 -1.7
98,481 - GFF4733 0.65 -0.8
98,609 + GFF4733 0.82 -0.1
98,609 + GFF4733 0.82 +0.3
98,610 - GFF4733 0.82 -1.7
98,610 - GFF4733 0.82 +0.9
98,921 - -0.5
98,944 + -0.4
98,944 + +0.0
98,944 + -2.2
98,945 - +0.9
98,945 - +2.9
98,965 + +0.0
98,966 - -0.5
99,007 + GFF4734 0.10 +0.9
99,008 - GFF4734 0.10 -0.4
99,008 - GFF4734 0.10 -0.0
99,084 + GFF4734 0.13 +0.8
99,084 + GFF4734 0.13 -0.2
99,085 - GFF4734 0.14 -0.1
99,088 + GFF4734 0.14 -1.4
99,088 + GFF4734 0.14 -0.6
99,088 + GFF4734 0.14 +0.5
99,088 + GFF4734 0.14 -1.2
99,088 + GFF4734 0.14 +1.0
99,088 + GFF4734 0.14 -0.4
99,089 - GFF4734 0.14 -0.4
99,089 - GFF4734 0.14 -0.3
99,196 + GFF4734 0.18 -0.4
99,196 + GFF4734 0.18 -0.5
99,197 - GFF4734 0.18 +0.6
99,311 - GFF4734 0.23 +0.0
99,424 + GFF4734 0.27 +0.9
99,502 + GFF4734 0.30 -0.2
99,502 + GFF4734 0.30 -1.1
99,502 + GFF4734 0.30 -0.6
99,502 + GFF4734 0.30 -0.6
99,503 - GFF4734 0.30 -0.1
99,503 - GFF4734 0.30 +0.8
99,598 + GFF4734 0.34 -1.1
99,598 + GFF4734 0.34 +0.2
99,599 - GFF4734 0.34 +0.2
99,601 + GFF4734 0.34 -0.1
99,601 + GFF4734 0.34 -1.2
99,601 + GFF4734 0.34 +0.5
99,601 + GFF4734 0.34 -0.9
99,601 + GFF4734 0.34 -0.7
99,601 + GFF4734 0.34 -1.5
99,601 + GFF4734 0.34 -0.3
99,602 - GFF4734 0.34 -0.1
99,602 - GFF4734 0.34 -0.2
99,682 + GFF4734 0.38 +0.7
99,682 + GFF4734 0.38 +1.0

Or see this region's nucleotide sequence