Strain Fitness in Variovorax sp. SCN45 around GFF4702

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4700 and GFF4701 overlap by 4 nucleotidesGFF4701 and GFF4702 overlap by 4 nucleotidesGFF4702 and GFF4703 are separated by 29 nucleotides GFF4700 - Various polyols ABC transporter, permease protein 1, at 64,008 to 64,892 GFF4700 GFF4701 - Various polyols ABC transporter, permease protein 2, at 64,889 to 65,731 GFF4701 GFF4702 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 65,728 to 66,867 GFF4702 GFF4703 - Xylitol dehydrogenase (EC 1.1.1.9), at 66,897 to 67,946 GFF4703 Position (kb) 65 66 67Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.767 kb on + strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.768 kb on - strand, within GFF4700at 64.803 kb on - strand, within GFF4700at 64.809 kb on + strandat 64.809 kb on + strandat 64.809 kb on + strandat 64.809 kb on + strandat 64.809 kb on + strandat 64.810 kb on - strandat 64.810 kb on - strandat 64.810 kb on - strandat 64.810 kb on - strandat 64.810 kb on - strandat 64.863 kb on + strandat 64.863 kb on + strandat 64.863 kb on + strandat 64.863 kb on + strandat 64.863 kb on + strandat 64.863 kb on + strandat 64.863 kb on + strandat 64.863 kb on + strandat 64.863 kb on + strandat 64.864 kb on - strandat 64.864 kb on - strandat 64.864 kb on - strandat 64.864 kb on - strandat 64.864 kb on - strandat 64.864 kb on - strandat 64.864 kb on - strandat 64.864 kb on - strandat 64.864 kb on - strandat 64.864 kb on - strandat 65.069 kb on + strand, within GFF4701at 65.069 kb on + strand, within GFF4701at 65.069 kb on + strand, within GFF4701at 65.069 kb on + strand, within GFF4701at 65.069 kb on + strand, within GFF4701at 65.069 kb on + strand, within GFF4701at 65.069 kb on + strand, within GFF4701at 65.069 kb on + strand, within GFF4701at 65.069 kb on + strand, within GFF4701at 65.069 kb on + strand, within GFF4701at 65.069 kb on + strand, within GFF4701at 65.070 kb on - strand, within GFF4701at 65.070 kb on - strand, within GFF4701at 65.070 kb on - strand, within GFF4701at 65.070 kb on - strand, within GFF4701at 65.070 kb on - strand, within GFF4701at 65.070 kb on - strand, within GFF4701at 65.070 kb on - strand, within GFF4701at 65.070 kb on - strand, within GFF4701at 65.070 kb on - strand, within GFF4701at 65.075 kb on + strand, within GFF4701at 65.075 kb on + strand, within GFF4701at 65.075 kb on + strand, within GFF4701at 65.075 kb on + strand, within GFF4701at 65.075 kb on + strand, within GFF4701at 65.075 kb on + strand, within GFF4701at 65.075 kb on + strand, within GFF4701at 65.075 kb on + strand, within GFF4701at 65.075 kb on + strand, within GFF4701at 65.075 kb on + strand, within GFF4701at 65.075 kb on + strand, within GFF4701at 65.076 kb on - strand, within GFF4701at 65.076 kb on - strand, within GFF4701at 65.076 kb on - strand, within GFF4701at 65.076 kb on - strand, within GFF4701at 65.076 kb on - strand, within GFF4701at 65.076 kb on - strand, within GFF4701at 65.076 kb on - strand, within GFF4701at 65.076 kb on - strand, within GFF4701at 65.076 kb on - strand, within GFF4701at 65.117 kb on + strand, within GFF4701at 65.178 kb on - strand, within GFF4701at 65.303 kb on + strand, within GFF4701at 65.304 kb on - strand, within GFF4701at 65.304 kb on - strand, within GFF4701at 65.304 kb on - strand, within GFF4701at 65.304 kb on - strand, within GFF4701at 65.333 kb on + strand, within GFF4701at 65.333 kb on + strand, within GFF4701at 65.334 kb on - strand, within GFF4701at 65.373 kb on + strand, within GFF4701at 65.374 kb on - strand, within GFF4701at 65.439 kb on - strand, within GFF4701at 66.013 kb on + strand, within GFF4702at 66.013 kb on + strand, within GFF4702at 66.014 kb on - strand, within GFF4702at 66.023 kb on - strand, within GFF4702at 66.328 kb on + strand, within GFF4702at 66.328 kb on + strand, within GFF4702at 66.328 kb on + strand, within GFF4702at 66.328 kb on + strand, within GFF4702at 66.328 kb on + strand, within GFF4702at 66.328 kb on + strand, within GFF4702at 66.328 kb on + strand, within GFF4702at 66.329 kb on - strand, within GFF4702at 66.329 kb on - strand, within GFF4702at 66.329 kb on - strand, within GFF4702at 66.329 kb on - strand, within GFF4702at 66.682 kb on + strand, within GFF4702at 67.026 kb on + strand, within GFF4703at 67.026 kb on + strand, within GFF4703at 67.027 kb on - strand, within GFF4703at 67.027 kb on - strand, within GFF4703at 67.027 kb on - strand, within GFF4703at 67.030 kb on - strand, within GFF4703at 67.030 kb on - strand, within GFF4703at 67.053 kb on + strand, within GFF4703at 67.053 kb on + strand, within GFF4703at 67.054 kb on - strand, within GFF4703at 67.054 kb on - strand, within GFF4703at 67.054 kb on - strand, within GFF4703at 67.195 kb on + strand, within GFF4703at 67.195 kb on + strand, within GFF4703at 67.195 kb on + strand, within GFF4703at 67.196 kb on - strand, within GFF4703at 67.196 kb on - strand, within GFF4703at 67.202 kb on + strand, within GFF4703at 67.202 kb on + strand, within GFF4703at 67.202 kb on + strand, within GFF4703at 67.202 kb on + strand, within GFF4703at 67.202 kb on + strand, within GFF4703at 67.202 kb on + strand, within GFF4703at 67.203 kb on - strand, within GFF4703at 67.203 kb on - strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.206 kb on + strand, within GFF4703at 67.207 kb on - strand, within GFF4703at 67.207 kb on - strand, within GFF4703at 67.207 kb on - strand, within GFF4703at 67.207 kb on - strand, within GFF4703at 67.207 kb on - strand, within GFF4703at 67.207 kb on - strand, within GFF4703at 67.694 kb on - strand, within GFF4703

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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64,767 + GFF4700 0.86 -0.1
64,767 + GFF4700 0.86 +0.9
64,767 + GFF4700 0.86 +0.1
64,767 + GFF4700 0.86 -1.8
64,767 + GFF4700 0.86 -0.8
64,767 + GFF4700 0.86 +0.3
64,767 + GFF4700 0.86 +0.5
64,767 + GFF4700 0.86 -0.8
64,767 + GFF4700 0.86 +0.5
64,767 + GFF4700 0.86 -0.3
64,767 + GFF4700 0.86 +0.8
64,767 + GFF4700 0.86 -2.1
64,767 + GFF4700 0.86 -0.2
64,768 - GFF4700 0.86 -0.6
64,768 - GFF4700 0.86 +0.6
64,768 - GFF4700 0.86 +0.8
64,768 - GFF4700 0.86 +0.0
64,768 - GFF4700 0.86 -1.3
64,768 - GFF4700 0.86 -0.2
64,768 - GFF4700 0.86 -0.5
64,768 - GFF4700 0.86 +0.8
64,768 - GFF4700 0.86 -2.3
64,768 - GFF4700 0.86 -1.0
64,768 - GFF4700 0.86 +0.0
64,803 - GFF4700 0.90 -0.1
64,809 + -1.3
64,809 + +0.1
64,809 + +0.5
64,809 + -0.5
64,809 + -0.5
64,810 - -1.0
64,810 - +0.3
64,810 - +0.6
64,810 - -0.5
64,810 - +1.5
64,863 + -1.0
64,863 + -0.8
64,863 + -0.5
64,863 + -1.1
64,863 + -1.3
64,863 + -2.3
64,863 + +1.2
64,863 + -1.2
64,863 + +1.5
64,864 - -0.4
64,864 - -2.0
64,864 - -0.5
64,864 - -0.6
64,864 - +1.4
64,864 - +0.2
64,864 - +0.5
64,864 - +0.0
64,864 - -0.5
64,864 - -0.9
65,069 + GFF4701 0.21 +0.8
65,069 + GFF4701 0.21 -0.1
65,069 + GFF4701 0.21 +0.9
65,069 + GFF4701 0.21 +0.5
65,069 + GFF4701 0.21 -0.5
65,069 + GFF4701 0.21 -0.6
65,069 + GFF4701 0.21 +1.1
65,069 + GFF4701 0.21 +0.7
65,069 + GFF4701 0.21 -0.1
65,069 + GFF4701 0.21 -0.9
65,069 + GFF4701 0.21 +0.3
65,070 - GFF4701 0.21 +0.2
65,070 - GFF4701 0.21 -0.6
65,070 - GFF4701 0.21 -1.0
65,070 - GFF4701 0.21 -0.7
65,070 - GFF4701 0.21 +0.6
65,070 - GFF4701 0.21 -0.3
65,070 - GFF4701 0.21 +1.2
65,070 - GFF4701 0.21 +2.2
65,070 - GFF4701 0.21 -0.8
65,075 + GFF4701 0.22 -0.8
65,075 + GFF4701 0.22 +0.4
65,075 + GFF4701 0.22 -0.7
65,075 + GFF4701 0.22 -0.5
65,075 + GFF4701 0.22 -0.9
65,075 + GFF4701 0.22 -3.1
65,075 + GFF4701 0.22 +1.1
65,075 + GFF4701 0.22 -0.5
65,075 + GFF4701 0.22 -0.4
65,075 + GFF4701 0.22 +0.3
65,075 + GFF4701 0.22 +0.9
65,076 - GFF4701 0.22 -1.1
65,076 - GFF4701 0.22 -0.5
65,076 - GFF4701 0.22 -0.4
65,076 - GFF4701 0.22 -1.1
65,076 - GFF4701 0.22 -0.2
65,076 - GFF4701 0.22 -0.6
65,076 - GFF4701 0.22 +2.5
65,076 - GFF4701 0.22 -0.5
65,076 - GFF4701 0.22 -0.1
65,117 + GFF4701 0.27 +1.1
65,178 - GFF4701 0.34 -0.5
65,303 + GFF4701 0.49 -1.1
65,304 - GFF4701 0.49 -0.6
65,304 - GFF4701 0.49 -0.3
65,304 - GFF4701 0.49 -1.0
65,304 - GFF4701 0.49 -2.0
65,333 + GFF4701 0.53 -1.0
65,333 + GFF4701 0.53 +0.3
65,334 - GFF4701 0.53 +0.0
65,373 + GFF4701 0.57 -0.5
65,374 - GFF4701 0.58 -0.5
65,439 - GFF4701 0.65 -0.1
66,013 + GFF4702 0.25 -1.1
66,013 + GFF4702 0.25 -2.7
66,014 - GFF4702 0.25 -2.4
66,023 - GFF4702 0.26 -1.1
66,328 + GFF4702 0.53 -0.7
66,328 + GFF4702 0.53 -0.6
66,328 + GFF4702 0.53 -0.8
66,328 + GFF4702 0.53 +0.5
66,328 + GFF4702 0.53 -0.5
66,328 + GFF4702 0.53 -0.4
66,328 + GFF4702 0.53 -0.0
66,329 - GFF4702 0.53 -1.0
66,329 - GFF4702 0.53 -0.8
66,329 - GFF4702 0.53 +0.4
66,329 - GFF4702 0.53 -1.0
66,682 + GFF4702 0.84 +1.2
67,026 + GFF4703 0.12 -0.7
67,026 + GFF4703 0.12 -0.6
67,027 - GFF4703 0.12 -0.2
67,027 - GFF4703 0.12 -0.3
67,027 - GFF4703 0.12 -0.2
67,030 - GFF4703 0.13 -0.1
67,030 - GFF4703 0.13 -0.1
67,053 + GFF4703 0.15 +1.0
67,053 + GFF4703 0.15 -0.9
67,054 - GFF4703 0.15 +0.3
67,054 - GFF4703 0.15 -0.3
67,054 - GFF4703 0.15 -0.2
67,195 + GFF4703 0.28 -0.0
67,195 + GFF4703 0.28 -0.2
67,195 + GFF4703 0.28 -0.4
67,196 - GFF4703 0.28 -0.5
67,196 - GFF4703 0.28 -0.4
67,202 + GFF4703 0.29 +0.6
67,202 + GFF4703 0.29 -0.8
67,202 + GFF4703 0.29 -2.0
67,202 + GFF4703 0.29 +0.2
67,202 + GFF4703 0.29 -0.9
67,202 + GFF4703 0.29 -0.3
67,203 - GFF4703 0.29 +0.4
67,203 - GFF4703 0.29 -0.1
67,206 + GFF4703 0.29 -0.7
67,206 + GFF4703 0.29 -0.5
67,206 + GFF4703 0.29 -0.5
67,206 + GFF4703 0.29 -1.7
67,206 + GFF4703 0.29 +0.4
67,206 + GFF4703 0.29 +0.4
67,206 + GFF4703 0.29 -2.5
67,206 + GFF4703 0.29 +0.1
67,206 + GFF4703 0.29 -1.2
67,207 - GFF4703 0.30 +1.3
67,207 - GFF4703 0.30 -0.1
67,207 - GFF4703 0.30 -0.1
67,207 - GFF4703 0.30 -0.2
67,207 - GFF4703 0.30 +0.1
67,207 - GFF4703 0.30 +1.0
67,694 - GFF4703 0.76 -0.5

Or see this region's nucleotide sequence