Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4535 and GFF4536 are separated by 18 nucleotides GFF4536 and GFF4537 overlap by 4 nucleotides GFF4537 and GFF4538 are separated by 0 nucleotides GFF4538 and GFF4539 are separated by 21 nucleotides GFF4539 and GFF4540 are separated by 375 nucleotides
GFF4535 - Tetrapartite efflux system, membrane fusion component FusE-like, at 173,924 to 174,862
GFF4535
GFF4536 - Tetrapartite efflux system component, FusD-like, at 174,881 to 175,087
GFF4536
GFF4537 - Tetrapartite efflux system, inner membrane component FusBC-like, at 175,084 to 177,216
GFF4537
GFF4538 - Transcriptional regulator, MarR family, at 177,217 to 177,684
GFF4538
GFF4539 - no description, at 177,706 to 177,831
GFF4539
GFF4540 - hypothetical protein, at 178,207 to 179,388
GFF4540
Position (kb) 175
176
177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 174.255 kb on + strand, within GFF4535 at 174.256 kb on - strand, within GFF4535 at 174.256 kb on - strand, within GFF4535 at 174.256 kb on - strand, within GFF4535 at 174.256 kb on - strand, within GFF4535 at 174.267 kb on + strand, within GFF4535 at 174.267 kb on + strand, within GFF4535 at 174.267 kb on + strand, within GFF4535 at 174.267 kb on + strand, within GFF4535 at 174.267 kb on + strand, within GFF4535 at 174.268 kb on - strand, within GFF4535 at 174.318 kb on + strand, within GFF4535 at 174.318 kb on + strand, within GFF4535 at 174.318 kb on + strand, within GFF4535 at 174.318 kb on + strand, within GFF4535 at 174.318 kb on + strand, within GFF4535 at 174.318 kb on + strand, within GFF4535 at 174.318 kb on + strand, within GFF4535 at 174.318 kb on + strand, within GFF4535 at 174.319 kb on - strand, within GFF4535 at 174.319 kb on - strand, within GFF4535 at 174.592 kb on - strand, within GFF4535 at 174.744 kb on + strand, within GFF4535 at 174.744 kb on + strand, within GFF4535 at 174.744 kb on + strand, within GFF4535 at 174.745 kb on - strand, within GFF4535 at 174.745 kb on - strand, within GFF4535 at 174.745 kb on - strand, within GFF4535 at 174.875 kb on - strand at 174.878 kb on + strand at 174.879 kb on - strand at 174.879 kb on - strand at 174.879 kb on - strand at 174.879 kb on - strand at 174.882 kb on + strand at 174.882 kb on + strand at 174.882 kb on + strand at 174.882 kb on + strand at 174.882 kb on + strand at 174.883 kb on - strand at 174.891 kb on + strand at 174.891 kb on + strand at 174.891 kb on + strand at 174.891 kb on + strand at 174.892 kb on - strand at 174.892 kb on - strand at 174.892 kb on - strand at 174.915 kb on + strand, within GFF4536 at 174.916 kb on - strand, within GFF4536 at 174.930 kb on + strand, within GFF4536 at 174.930 kb on + strand, within GFF4536 at 174.930 kb on + strand, within GFF4536 at 174.931 kb on - strand, within GFF4536 at 174.931 kb on - strand, within GFF4536 at 174.931 kb on - strand, within GFF4536 at 174.972 kb on + strand, within GFF4536 at 174.972 kb on + strand, within GFF4536 at 175.056 kb on + strand, within GFF4536 at 175.056 kb on + strand, within GFF4536 at 175.056 kb on + strand, within GFF4536 at 175.056 kb on + strand, within GFF4536 at 175.056 kb on + strand, within GFF4536 at 175.056 kb on + strand, within GFF4536 at 175.056 kb on + strand, within GFF4536 at 175.056 kb on + strand, within GFF4536 at 175.057 kb on - strand, within GFF4536 at 175.057 kb on - strand, within GFF4536 at 175.057 kb on - strand, within GFF4536 at 175.057 kb on - strand, within GFF4536 at 175.057 kb on - strand, within GFF4536 at 175.057 kb on - strand, within GFF4536 at 175.496 kb on + strand, within GFF4537 at 175.496 kb on + strand, within GFF4537 at 175.496 kb on + strand, within GFF4537 at 175.496 kb on + strand, within GFF4537 at 175.496 kb on + strand, within GFF4537 at 175.497 kb on - strand, within GFF4537 at 175.497 kb on - strand, within GFF4537 at 175.497 kb on - strand, within GFF4537 at 175.497 kb on - strand, within GFF4537 at 175.497 kb on - strand, within GFF4537 at 175.497 kb on - strand, within GFF4537 at 175.514 kb on + strand, within GFF4537 at 175.515 kb on - strand, within GFF4537 at 175.515 kb on - strand, within GFF4537 at 175.772 kb on + strand, within GFF4537 at 175.772 kb on + strand, within GFF4537 at 175.772 kb on + strand, within GFF4537 at 175.772 kb on + strand, within GFF4537 at 175.772 kb on + strand, within GFF4537 at 175.773 kb on - strand, within GFF4537 at 175.773 kb on - strand, within GFF4537 at 175.773 kb on - strand, within GFF4537 at 175.773 kb on - strand, within GFF4537 at 175.773 kb on - strand, within GFF4537 at 175.773 kb on - strand, within GFF4537 at 175.856 kb on + strand, within GFF4537 at 175.856 kb on + strand, within GFF4537 at 175.856 kb on + strand, within GFF4537 at 175.856 kb on + strand, within GFF4537 at 175.856 kb on + strand, within GFF4537 at 175.856 kb on + strand, within GFF4537 at 175.856 kb on + strand, within GFF4537 at 175.856 kb on + strand, within GFF4537 at 175.857 kb on - strand, within GFF4537 at 175.857 kb on - strand, within GFF4537 at 175.857 kb on - strand, within GFF4537 at 175.857 kb on - strand, within GFF4537 at 175.857 kb on - strand, within GFF4537 at 175.857 kb on - strand, within GFF4537 at 175.857 kb on - strand, within GFF4537 at 175.876 kb on - strand, within GFF4537 at 175.876 kb on - strand, within GFF4537 at 175.876 kb on - strand, within GFF4537 at 176.066 kb on + strand, within GFF4537 at 176.066 kb on + strand, within GFF4537 at 176.067 kb on - strand, within GFF4537 at 176.617 kb on - strand, within GFF4537 at 176.858 kb on + strand, within GFF4537 at 176.858 kb on + strand, within GFF4537 at 176.859 kb on - strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on + strand, within GFF4537 at 176.879 kb on - strand, within GFF4537 at 176.880 kb on - strand, within GFF4537 at 176.880 kb on - strand, within GFF4537 at 176.880 kb on - strand, within GFF4537 at 176.880 kb on - strand, within GFF4537 at 177.029 kb on + strand at 177.029 kb on + strand at 177.029 kb on + strand at 177.029 kb on + strand at 177.030 kb on - strand at 177.030 kb on - strand at 177.030 kb on - strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.077 kb on + strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.078 kb on - strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.131 kb on + strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.132 kb on - strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.218 kb on + strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.219 kb on - strand at 177.587 kb on + strand, within GFF4538 at 177.588 kb on - strand, within GFF4538 at 177.743 kb on + strand, within GFF4539 at 177.747 kb on + strand, within GFF4539 at 177.747 kb on + strand, within GFF4539 at 177.747 kb on + strand, within GFF4539 at 177.771 kb on - strand, within GFF4539 at 177.771 kb on - strand, within GFF4539 at 177.771 kb on - strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.774 kb on + strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539 at 177.775 kb on - strand, within GFF4539
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 174,255 + GFF4535 0.35 -0.9 174,256 - GFF4535 0.35 +0.5 174,256 - GFF4535 0.35 -2.2 174,256 - GFF4535 0.35 -1.0 174,256 - GFF4535 0.35 -1.5 174,267 + GFF4535 0.37 -0.4 174,267 + GFF4535 0.37 +1.5 174,267 + GFF4535 0.37 -0.6 174,267 + GFF4535 0.37 -1.5 174,267 + GFF4535 0.37 -0.9 174,268 - GFF4535 0.37 +0.2 174,318 + GFF4535 0.42 -0.2 174,318 + GFF4535 0.42 +0.5 174,318 + GFF4535 0.42 +0.5 174,318 + GFF4535 0.42 -0.6 174,318 + GFF4535 0.42 -0.4 174,318 + GFF4535 0.42 +0.8 174,318 + GFF4535 0.42 -2.0 174,318 + GFF4535 0.42 -0.9 174,319 - GFF4535 0.42 -1.3 174,319 - GFF4535 0.42 -0.4 174,592 - GFF4535 0.71 -1.3 174,744 + GFF4535 0.87 +1.2 174,744 + GFF4535 0.87 +0.2 174,744 + GFF4535 0.87 +1.8 174,745 - GFF4535 0.87 -0.0 174,745 - GFF4535 0.87 -1.2 174,745 - GFF4535 0.87 -0.2 174,875 - -1.1 174,878 + +0.8 174,879 - -1.4 174,879 - -1.5 174,879 - -1.3 174,879 - -0.2 174,882 + -0.1 174,882 + -0.3 174,882 + -0.7 174,882 + +0.8 174,882 + -1.0 174,883 - -0.0 174,891 + +0.4 174,891 + +2.0 174,891 + +0.3 174,891 + +0.4 174,892 - +0.4 174,892 - -1.4 174,892 - -0.0 174,915 + GFF4536 0.16 +0.3 174,916 - GFF4536 0.17 -0.0 174,930 + GFF4536 0.24 -0.1 174,930 + GFF4536 0.24 -0.3 174,930 + GFF4536 0.24 +0.1 174,931 - GFF4536 0.24 +0.3 174,931 - GFF4536 0.24 +0.3 174,931 - GFF4536 0.24 -1.3 174,972 + GFF4536 0.44 -1.0 174,972 + GFF4536 0.44 +0.6 175,056 + GFF4536 0.85 -1.9 175,056 + GFF4536 0.85 -1.7 175,056 + GFF4536 0.85 +0.8 175,056 + GFF4536 0.85 +0.8 175,056 + GFF4536 0.85 -0.0 175,056 + GFF4536 0.85 -1.4 175,056 + GFF4536 0.85 +1.0 175,056 + GFF4536 0.85 -0.3 175,057 - GFF4536 0.85 +1.2 175,057 - GFF4536 0.85 -0.5 175,057 - GFF4536 0.85 +1.5 175,057 - GFF4536 0.85 -0.7 175,057 - GFF4536 0.85 -0.7 175,057 - GFF4536 0.85 -1.6 175,496 + GFF4537 0.19 -0.2 175,496 + GFF4537 0.19 -0.3 175,496 + GFF4537 0.19 -1.0 175,496 + GFF4537 0.19 -0.3 175,496 + GFF4537 0.19 -0.3 175,497 - GFF4537 0.19 -0.1 175,497 - GFF4537 0.19 -0.3 175,497 - GFF4537 0.19 +1.8 175,497 - GFF4537 0.19 -0.5 175,497 - GFF4537 0.19 +1.8 175,497 - GFF4537 0.19 -0.8 175,514 + GFF4537 0.20 -0.3 175,515 - GFF4537 0.20 +0.7 175,515 - GFF4537 0.20 -1.0 175,772 + GFF4537 0.32 +0.1 175,772 + GFF4537 0.32 +0.4 175,772 + GFF4537 0.32 +0.8 175,772 + GFF4537 0.32 +1.4 175,772 + GFF4537 0.32 -0.5 175,773 - GFF4537 0.32 +0.2 175,773 - GFF4537 0.32 +0.2 175,773 - GFF4537 0.32 +0.2 175,773 - GFF4537 0.32 -0.6 175,773 - GFF4537 0.32 +0.3 175,773 - GFF4537 0.32 -0.2 175,856 + GFF4537 0.36 -0.8 175,856 + GFF4537 0.36 +0.6 175,856 + GFF4537 0.36 -0.2 175,856 + GFF4537 0.36 +0.8 175,856 + GFF4537 0.36 -0.3 175,856 + GFF4537 0.36 -1.1 175,856 + GFF4537 0.36 -0.1 175,856 + GFF4537 0.36 +0.6 175,857 - GFF4537 0.36 -0.4 175,857 - GFF4537 0.36 +0.4 175,857 - GFF4537 0.36 -0.1 175,857 - GFF4537 0.36 -0.7 175,857 - GFF4537 0.36 +1.0 175,857 - GFF4537 0.36 +0.8 175,857 - GFF4537 0.36 +0.7 175,876 - GFF4537 0.37 -0.1 175,876 - GFF4537 0.37 +0.2 175,876 - GFF4537 0.37 -0.0 176,066 + GFF4537 0.46 +3.1 176,066 + GFF4537 0.46 +1.1 176,067 - GFF4537 0.46 +0.5 176,617 - GFF4537 0.72 +0.0 176,858 + GFF4537 0.83 +0.4 176,858 + GFF4537 0.83 +1.6 176,859 - GFF4537 0.83 -0.6 176,879 + GFF4537 0.84 +0.8 176,879 + GFF4537 0.84 -0.3 176,879 + GFF4537 0.84 +0.7 176,879 + GFF4537 0.84 -0.8 176,879 + GFF4537 0.84 -2.1 176,879 + GFF4537 0.84 -0.3 176,879 + GFF4537 0.84 -0.4 176,879 + GFF4537 0.84 -1.5 176,879 - GFF4537 0.84 +0.5 176,880 - GFF4537 0.84 -0.0 176,880 - GFF4537 0.84 -0.0 176,880 - GFF4537 0.84 -0.5 176,880 - GFF4537 0.84 +0.3 177,029 + -0.7 177,029 + -1.7 177,029 + +0.4 177,029 + -0.5 177,030 - -0.8 177,030 - +0.0 177,030 - +0.0 177,077 + +1.3 177,077 + -0.9 177,077 + +0.3 177,077 + -0.5 177,077 + -0.1 177,077 + +3.2 177,077 + -0.3 177,077 + +0.2 177,077 + -0.0 177,077 + -0.7 177,077 + -0.6 177,077 + -1.0 177,077 + -0.2 177,077 + -1.0 177,077 + -0.4 177,077 + -0.2 177,077 + +0.6 177,077 + -0.7 177,077 + -0.3 177,077 + -0.2 177,077 + -0.2 177,077 + -0.8 177,077 + +0.1 177,077 + +0.5 177,077 + -2.9 177,077 + -0.2 177,077 + -0.6 177,077 + +0.7 177,077 + +0.2 177,078 - -0.2 177,078 - +0.8 177,078 - +0.2 177,078 - -0.7 177,078 - +0.8 177,078 - +0.4 177,078 - +0.3 177,078 - -0.4 177,078 - +0.7 177,078 - +0.8 177,078 - +0.0 177,078 - -0.5 177,078 - +0.2 177,078 - -0.6 177,078 - -0.6 177,078 - +0.1 177,078 - +2.5 177,078 - +0.2 177,078 - +3.4 177,078 - +0.3 177,078 - +0.4 177,078 - -0.7 177,078 - -0.5 177,078 - +0.1 177,078 - -0.1 177,078 - -0.9 177,078 - -0.5 177,131 + +0.2 177,131 + -0.3 177,131 + +0.8 177,131 + +0.2 177,131 + -0.2 177,131 + -0.3 177,131 + -0.4 177,131 + -2.5 177,131 + -0.4 177,131 + +0.5 177,131 + -0.2 177,131 + -0.8 177,131 + +0.4 177,131 + -0.3 177,131 + +0.1 177,131 + -0.2 177,131 + +0.2 177,131 + -1.4 177,132 - -0.2 177,132 - +0.4 177,132 - -0.5 177,132 - -0.4 177,132 - -2.1 177,132 - +0.5 177,132 - +1.8 177,132 - -2.0 177,132 - -0.3 177,132 - +0.1 177,132 - +0.7 177,132 - -0.9 177,132 - -1.1 177,132 - +1.8 177,132 - +0.0 177,132 - -0.1 177,132 - +0.1 177,132 - -1.4 177,132 - -1.6 177,132 - +0.8 177,218 + -0.6 177,218 + +1.0 177,218 + -1.2 177,218 + -0.2 177,218 + -0.5 177,218 + +0.1 177,218 + +0.1 177,218 + -0.7 177,219 - -0.2 177,219 - -0.0 177,219 - +0.1 177,219 - +0.3 177,219 - +0.0 177,219 - -0.1 177,219 - -0.3 177,219 - +1.0 177,219 - +0.7 177,219 - -1.0 177,219 - +0.0 177,219 - -0.3 177,587 + GFF4538 0.79 -0.7 177,588 - GFF4538 0.79 +0.2 177,743 + GFF4539 0.29 -0.2 177,747 + GFF4539 0.33 -0.4 177,747 + GFF4539 0.33 -0.2 177,747 + GFF4539 0.33 -0.7 177,771 - GFF4539 0.52 -0.7 177,771 - GFF4539 0.52 -0.7 177,771 - GFF4539 0.52 -0.5 177,774 + GFF4539 0.54 +0.3 177,774 + GFF4539 0.54 -0.1 177,774 + GFF4539 0.54 +1.1 177,774 + GFF4539 0.54 -0.1 177,774 + GFF4539 0.54 -0.3 177,774 + GFF4539 0.54 -2.2 177,774 + GFF4539 0.54 -0.5 177,774 + GFF4539 0.54 +0.5 177,775 - GFF4539 0.55 +0.0 177,775 - GFF4539 0.55 +0.1 177,775 - GFF4539 0.55 -1.0 177,775 - GFF4539 0.55 +0.1 177,775 - GFF4539 0.55 -0.3 177,775 - GFF4539 0.55 -0.0 177,775 - GFF4539 0.55 -0.6 177,775 - GFF4539 0.55 -0.5
Or see this region's nucleotide sequence