Strain Fitness in Variovorax sp. SCN45 around GFF4533

Experiment: M9 with Supernatant from Cyptococcus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4531 and GFF4532 are separated by 140 nucleotidesGFF4532 and GFF4533 overlap by 11 nucleotidesGFF4533 and GFF4534 overlap by 4 nucleotides GFF4531 - Pseudouridine synthase, at 169,822 to 170,547 GFF4531 GFF4532 - hypothetical protein, at 170,688 to 171,233 GFF4532 GFF4533 - Multidrug resistance transporter, Bcr/CflA family, at 171,223 to 172,452 GFF4533 GFF4534 - Tetrapartite efflux system, outer membrane factor lipoprotein FusA-like, at 172,449 to 173,927 GFF4534 Position (kb) 171 172 173Strain fitness (log2 ratio) -2 -1 0 1 2at 170.521 kb on + strandat 170.522 kb on - strandat 170.522 kb on - strandat 170.522 kb on - strandat 170.522 kb on - strandat 170.757 kb on + strand, within GFF4532at 170.757 kb on + strand, within GFF4532at 170.757 kb on + strand, within GFF4532at 170.757 kb on + strand, within GFF4532at 170.757 kb on + strand, within GFF4532at 170.757 kb on + strand, within GFF4532at 170.758 kb on - strand, within GFF4532at 170.758 kb on - strand, within GFF4532at 171.106 kb on - strand, within GFF4532at 171.147 kb on + strand, within GFF4532at 171.147 kb on + strand, within GFF4532at 171.147 kb on + strand, within GFF4532at 171.147 kb on + strand, within GFF4532at 171.148 kb on - strand, within GFF4532at 171.405 kb on - strand, within GFF4533at 171.683 kb on + strand, within GFF4533at 171.683 kb on + strand, within GFF4533at 171.683 kb on + strand, within GFF4533at 171.684 kb on - strand, within GFF4533at 171.684 kb on - strand, within GFF4533at 171.684 kb on - strand, within GFF4533at 171.684 kb on - strand, within GFF4533at 171.684 kb on - strand, within GFF4533at 171.684 kb on - strand, within GFF4533at 171.755 kb on + strand, within GFF4533at 171.755 kb on + strand, within GFF4533at 171.755 kb on + strand, within GFF4533at 171.755 kb on + strand, within GFF4533at 171.755 kb on + strand, within GFF4533at 171.755 kb on + strand, within GFF4533at 171.755 kb on + strand, within GFF4533at 171.755 kb on + strand, within GFF4533at 171.756 kb on - strand, within GFF4533at 171.756 kb on - strand, within GFF4533at 171.756 kb on - strand, within GFF4533at 171.756 kb on - strand, within GFF4533at 171.756 kb on - strand, within GFF4533at 171.756 kb on - strand, within GFF4533at 171.756 kb on - strand, within GFF4533at 171.756 kb on - strand, within GFF4533at 171.827 kb on + strand, within GFF4533at 171.827 kb on + strand, within GFF4533at 171.828 kb on - strand, within GFF4533at 171.935 kb on + strand, within GFF4533at 171.935 kb on + strand, within GFF4533at 171.936 kb on - strand, within GFF4533at 171.936 kb on - strand, within GFF4533at 171.936 kb on - strand, within GFF4533at 171.936 kb on - strand, within GFF4533at 171.936 kb on - strand, within GFF4533at 172.184 kb on + strand, within GFF4533at 172.184 kb on + strand, within GFF4533at 172.185 kb on - strand, within GFF4533at 172.185 kb on - strand, within GFF4533at 172.185 kb on - strand, within GFF4533at 172.185 kb on - strand, within GFF4533at 172.185 kb on - strand, within GFF4533at 172.185 kb on - strand, within GFF4533at 172.185 kb on - strand, within GFF4533at 172.185 kb on - strand, within GFF4533at 172.244 kb on + strand, within GFF4533at 172.245 kb on - strand, within GFF4533at 172.245 kb on - strand, within GFF4533at 172.245 kb on - strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.278 kb on - strand, within GFF4533at 172.278 kb on - strand, within GFF4533at 172.278 kb on - strand, within GFF4533at 172.278 kb on - strand, within GFF4533at 172.648 kb on + strand, within GFF4534at 172.649 kb on - strand, within GFF4534at 172.649 kb on - strand, within GFF4534at 172.732 kb on + strand, within GFF4534at 172.732 kb on + strand, within GFF4534at 172.732 kb on + strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.966 kb on + strand, within GFF4534at 172.966 kb on + strand, within GFF4534at 173.167 kb on + strand, within GFF4534at 173.168 kb on - strand, within GFF4534at 173.369 kb on - strand, within GFF4534at 173.369 kb on - strand, within GFF4534

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
remove
170,521 + -0.5
170,522 - -0.4
170,522 - +1.0
170,522 - +0.1
170,522 - +1.4
170,757 + GFF4532 0.13 -0.9
170,757 + GFF4532 0.13 +0.0
170,757 + GFF4532 0.13 -0.1
170,757 + GFF4532 0.13 -2.2
170,757 + GFF4532 0.13 +0.8
170,757 + GFF4532 0.13 -1.3
170,758 - GFF4532 0.13 +0.3
170,758 - GFF4532 0.13 -0.4
171,106 - GFF4532 0.77 -0.5
171,147 + GFF4532 0.84 -0.4
171,147 + GFF4532 0.84 +0.3
171,147 + GFF4532 0.84 -0.5
171,147 + GFF4532 0.84 +0.5
171,148 - GFF4532 0.84 +1.8
171,405 - GFF4533 0.15 -0.4
171,683 + GFF4533 0.37 +1.4
171,683 + GFF4533 0.37 -0.4
171,683 + GFF4533 0.37 +1.8
171,684 - GFF4533 0.37 -0.2
171,684 - GFF4533 0.37 +1.1
171,684 - GFF4533 0.37 +0.3
171,684 - GFF4533 0.37 -0.9
171,684 - GFF4533 0.37 -0.2
171,684 - GFF4533 0.37 -0.6
171,755 + GFF4533 0.43 -1.0
171,755 + GFF4533 0.43 +0.8
171,755 + GFF4533 0.43 +0.7
171,755 + GFF4533 0.43 +0.4
171,755 + GFF4533 0.43 -0.7
171,755 + GFF4533 0.43 -1.1
171,755 + GFF4533 0.43 +0.3
171,755 + GFF4533 0.43 -1.8
171,756 - GFF4533 0.43 -0.1
171,756 - GFF4533 0.43 +0.5
171,756 - GFF4533 0.43 +0.2
171,756 - GFF4533 0.43 -1.5
171,756 - GFF4533 0.43 -1.1
171,756 - GFF4533 0.43 +0.5
171,756 - GFF4533 0.43 +1.0
171,756 - GFF4533 0.43 -0.1
171,827 + GFF4533 0.49 -0.7
171,827 + GFF4533 0.49 +0.3
171,828 - GFF4533 0.49 -0.4
171,935 + GFF4533 0.58 -1.6
171,935 + GFF4533 0.58 -0.4
171,936 - GFF4533 0.58 -0.1
171,936 - GFF4533 0.58 -0.5
171,936 - GFF4533 0.58 -0.9
171,936 - GFF4533 0.58 -0.6
171,936 - GFF4533 0.58 -0.5
172,184 + GFF4533 0.78 +1.4
172,184 + GFF4533 0.78 +1.0
172,185 - GFF4533 0.78 -0.7
172,185 - GFF4533 0.78 +0.3
172,185 - GFF4533 0.78 -0.0
172,185 - GFF4533 0.78 -1.1
172,185 - GFF4533 0.78 -0.9
172,185 - GFF4533 0.78 +0.5
172,185 - GFF4533 0.78 -0.7
172,185 - GFF4533 0.78 -0.4
172,244 + GFF4533 0.83 -1.0
172,245 - GFF4533 0.83 -1.9
172,245 - GFF4533 0.83 -0.8
172,245 - GFF4533 0.83 -0.8
172,277 + GFF4533 0.86 -0.4
172,277 + GFF4533 0.86 -1.4
172,277 + GFF4533 0.86 +1.0
172,277 + GFF4533 0.86 +0.3
172,277 + GFF4533 0.86 -0.3
172,277 + GFF4533 0.86 +0.6
172,277 + GFF4533 0.86 +1.3
172,277 + GFF4533 0.86 -0.4
172,277 + GFF4533 0.86 +0.1
172,277 + GFF4533 0.86 +0.9
172,278 - GFF4533 0.86 -0.3
172,278 - GFF4533 0.86 +0.2
172,278 - GFF4533 0.86 -1.1
172,278 - GFF4533 0.86 -0.9
172,648 + GFF4534 0.13 +0.2
172,649 - GFF4534 0.14 +2.1
172,649 - GFF4534 0.14 +0.2
172,732 + GFF4534 0.19 +0.9
172,732 + GFF4534 0.19 +0.3
172,732 + GFF4534 0.19 +0.2
172,733 - GFF4534 0.19 +0.8
172,733 - GFF4534 0.19 +0.6
172,733 - GFF4534 0.19 -0.2
172,733 - GFF4534 0.19 +0.2
172,733 - GFF4534 0.19 +0.8
172,733 - GFF4534 0.19 -0.5
172,733 - GFF4534 0.19 +0.5
172,733 - GFF4534 0.19 +0.2
172,733 - GFF4534 0.19 +0.4
172,733 - GFF4534 0.19 +1.1
172,733 - GFF4534 0.19 -0.8
172,733 - GFF4534 0.19 +0.6
172,733 - GFF4534 0.19 -1.0
172,733 - GFF4534 0.19 -1.3
172,733 - GFF4534 0.19 +1.6
172,733 - GFF4534 0.19 -0.5
172,733 - GFF4534 0.19 +0.0
172,966 + GFF4534 0.35 -0.3
172,966 + GFF4534 0.35 -1.3
173,167 + GFF4534 0.49 +0.2
173,168 - GFF4534 0.49 -1.4
173,369 - GFF4534 0.62 -0.4
173,369 - GFF4534 0.62 -1.3

Or see this region's nucleotide sequence