Strain Fitness in Variovorax sp. SCN45 around GFF4389

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4388 and GFF4389 are separated by 436 nucleotidesGFF4389 and GFF4390 are separated by 457 nucleotides GFF4388 - Type IV secretory pathway, protease TraF, at 16,096 to 16,695 GFF4388 GFF4389 - Type IV secretory pathway, VirD2 components (relaxase), at 17,132 to 19,126 GFF4389 GFF4390 - Membrane-fusion protein, at 19,584 to 20,471 GFF4390 Position (kb) 17 18 19 20Strain fitness (log2 ratio) -2 -1 0 1 2at 16.250 kb on - strand, within GFF4388at 16.250 kb on - strand, within GFF4388at 16.250 kb on - strand, within GFF4388at 16.250 kb on - strand, within GFF4388at 16.250 kb on - strand, within GFF4388at 16.250 kb on - strand, within GFF4388at 16.250 kb on - strand, within GFF4388at 16.250 kb on - strand, within GFF4388at 16.250 kb on - strand, within GFF4388at 16.250 kb on - strand, within GFF4388at 16.250 kb on - strand, within GFF4388at 16.250 kb on - strand, within GFF4388at 16.250 kb on - strand, within GFF4388at 16.250 kb on - strand, within GFF4388at 16.400 kb on - strand, within GFF4388at 16.400 kb on - strand, within GFF4388at 16.400 kb on - strand, within GFF4388at 16.400 kb on - strand, within GFF4388at 16.400 kb on - strand, within GFF4388at 16.478 kb on + strand, within GFF4388at 16.478 kb on + strand, within GFF4388at 16.478 kb on + strand, within GFF4388at 16.478 kb on + strand, within GFF4388at 16.478 kb on + strand, within GFF4388at 16.478 kb on + strand, within GFF4388at 16.479 kb on - strand, within GFF4388at 16.479 kb on - strand, within GFF4388at 16.479 kb on - strand, within GFF4388at 16.479 kb on - strand, within GFF4388at 16.479 kb on - strand, within GFF4388at 16.516 kb on - strand, within GFF4388at 16.726 kb on + strandat 16.726 kb on + strandat 16.726 kb on + strandat 16.726 kb on + strandat 16.726 kb on + strandat 16.726 kb on + strandat 16.727 kb on - strandat 16.727 kb on - strandat 16.727 kb on - strandat 16.727 kb on - strandat 16.727 kb on - strandat 16.727 kb on - strandat 16.859 kb on + strandat 16.859 kb on + strandat 16.859 kb on + strandat 16.859 kb on + strandat 16.859 kb on + strandat 16.859 kb on + strandat 16.860 kb on - strandat 16.860 kb on - strandat 16.860 kb on - strandat 17.049 kb on + strandat 17.049 kb on + strandat 17.050 kb on - strandat 17.050 kb on - strandat 17.329 kb on + strandat 17.329 kb on + strandat 17.329 kb on + strandat 17.330 kb on - strandat 17.447 kb on + strand, within GFF4389at 17.447 kb on + strand, within GFF4389at 17.447 kb on + strand, within GFF4389at 17.495 kb on + strand, within GFF4389at 17.495 kb on + strand, within GFF4389at 17.495 kb on + strand, within GFF4389at 17.496 kb on - strand, within GFF4389at 17.496 kb on - strand, within GFF4389at 17.496 kb on - strand, within GFF4389at 17.496 kb on - strand, within GFF4389at 17.618 kb on + strand, within GFF4389at 17.618 kb on + strand, within GFF4389at 17.618 kb on + strand, within GFF4389at 17.618 kb on + strand, within GFF4389at 17.618 kb on + strand, within GFF4389at 17.618 kb on + strand, within GFF4389at 17.619 kb on - strand, within GFF4389at 17.619 kb on - strand, within GFF4389at 17.619 kb on - strand, within GFF4389at 17.619 kb on - strand, within GFF4389at 17.619 kb on - strand, within GFF4389at 17.619 kb on - strand, within GFF4389at 17.619 kb on - strand, within GFF4389at 17.619 kb on - strand, within GFF4389at 17.619 kb on - strand, within GFF4389at 17.655 kb on + strand, within GFF4389at 17.655 kb on + strand, within GFF4389at 17.655 kb on + strand, within GFF4389at 17.656 kb on - strand, within GFF4389at 17.656 kb on - strand, within GFF4389at 17.656 kb on - strand, within GFF4389at 17.656 kb on - strand, within GFF4389at 17.656 kb on - strand, within GFF4389at 17.656 kb on - strand, within GFF4389at 17.771 kb on + strand, within GFF4389at 17.771 kb on + strand, within GFF4389at 17.771 kb on + strand, within GFF4389at 17.771 kb on + strand, within GFF4389at 17.771 kb on + strand, within GFF4389at 17.771 kb on + strand, within GFF4389at 17.914 kb on + strand, within GFF4389at 17.946 kb on + strand, within GFF4389at 17.946 kb on + strand, within GFF4389at 17.947 kb on - strand, within GFF4389at 17.947 kb on - strand, within GFF4389at 17.947 kb on - strand, within GFF4389at 18.033 kb on + strand, within GFF4389at 18.033 kb on + strand, within GFF4389at 18.033 kb on + strand, within GFF4389at 18.034 kb on - strand, within GFF4389at 18.034 kb on - strand, within GFF4389at 18.252 kb on - strand, within GFF4389at 18.252 kb on - strand, within GFF4389at 18.252 kb on - strand, within GFF4389at 18.323 kb on + strand, within GFF4389at 18.323 kb on + strand, within GFF4389at 18.323 kb on + strand, within GFF4389at 18.413 kb on + strand, within GFF4389at 18.414 kb on - strand, within GFF4389at 18.414 kb on - strand, within GFF4389at 18.414 kb on - strand, within GFF4389at 18.552 kb on + strand, within GFF4389at 18.552 kb on + strand, within GFF4389at 18.552 kb on + strand, within GFF4389at 18.553 kb on - strand, within GFF4389at 18.553 kb on - strand, within GFF4389at 18.553 kb on - strand, within GFF4389at 18.593 kb on + strand, within GFF4389at 18.593 kb on + strand, within GFF4389at 18.593 kb on + strand, within GFF4389at 18.593 kb on + strand, within GFF4389at 18.593 kb on + strand, within GFF4389at 18.593 kb on + strand, within GFF4389at 18.593 kb on + strand, within GFF4389at 18.594 kb on - strand, within GFF4389at 18.594 kb on - strand, within GFF4389at 18.819 kb on + strand, within GFF4389at 18.819 kb on + strand, within GFF4389at 18.819 kb on + strand, within GFF4389at 18.819 kb on + strand, within GFF4389at 18.819 kb on + strand, within GFF4389at 18.819 kb on + strand, within GFF4389at 18.819 kb on + strand, within GFF4389at 18.882 kb on + strand, within GFF4389at 18.882 kb on + strand, within GFF4389at 18.882 kb on + strand, within GFF4389at 18.882 kb on + strand, within GFF4389at 18.882 kb on + strand, within GFF4389at 18.882 kb on + strand, within GFF4389at 18.882 kb on + strand, within GFF4389at 18.882 kb on + strand, within GFF4389at 18.883 kb on - strand, within GFF4389at 18.883 kb on - strand, within GFF4389at 18.883 kb on - strand, within GFF4389at 18.883 kb on - strand, within GFF4389at 18.883 kb on - strand, within GFF4389at 18.944 kb on + strandat 18.944 kb on + strandat 18.944 kb on + strandat 18.945 kb on - strandat 18.945 kb on - strandat 18.945 kb on - strandat 18.945 kb on - strandat 18.945 kb on - strandat 18.945 kb on - strandat 18.977 kb on + strandat 18.978 kb on - strandat 19.103 kb on - strandat 19.103 kb on - strandat 19.103 kb on - strandat 19.103 kb on - strandat 19.158 kb on + strandat 19.158 kb on + strandat 19.159 kb on - strandat 19.235 kb on + strandat 19.236 kb on - strandat 19.236 kb on - strandat 19.236 kb on - strandat 19.236 kb on - strandat 19.325 kb on + strandat 19.325 kb on + strandat 19.325 kb on + strandat 19.325 kb on + strandat 19.325 kb on + strandat 19.325 kb on + strandat 19.325 kb on + strandat 19.325 kb on + strandat 19.325 kb on + strandat 19.325 kb on + strandat 19.325 kb on + strandat 19.325 kb on + strandat 19.325 kb on + strandat 19.325 kb on + strandat 19.325 kb on + strandat 19.325 kb on + strandat 19.325 kb on + strandat 19.325 kb on + strandat 19.325 kb on + strandat 19.325 kb on + strandat 19.325 kb on + strandat 19.326 kb on - strandat 19.326 kb on - strandat 19.326 kb on - strandat 19.326 kb on - strandat 19.326 kb on - strandat 19.326 kb on - strandat 19.326 kb on - strandat 19.326 kb on - strandat 19.326 kb on - strandat 19.326 kb on - strandat 19.326 kb on - strandat 19.326 kb on - strandat 19.326 kb on - strandat 19.326 kb on - strandat 19.326 kb on - strandat 19.326 kb on - strandat 19.326 kb on - strandat 19.326 kb on - strandat 19.329 kb on + strandat 19.329 kb on + strandat 19.329 kb on + strandat 19.329 kb on + strandat 19.329 kb on + strandat 19.329 kb on + strandat 19.329 kb on + strandat 19.329 kb on + strandat 19.329 kb on + strandat 19.329 kb on + strandat 19.329 kb on + strandat 19.329 kb on + strandat 19.330 kb on - strandat 19.330 kb on - strandat 19.330 kb on - strandat 19.330 kb on - strandat 19.330 kb on - strandat 19.330 kb on - strandat 19.330 kb on - strandat 19.330 kb on - strandat 19.330 kb on - strandat 19.330 kb on - strandat 19.330 kb on - strandat 19.330 kb on - strandat 19.330 kb on - strandat 19.330 kb on - strandat 19.330 kb on - strandat 19.427 kb on + strandat 19.427 kb on + strandat 19.427 kb on + strandat 19.428 kb on - strandat 19.428 kb on - strandat 19.428 kb on - strandat 19.428 kb on - strandat 19.428 kb on - strandat 19.428 kb on - strandat 19.435 kb on + strandat 19.435 kb on + strandat 19.435 kb on + strandat 19.435 kb on + strandat 19.435 kb on + strandat 19.436 kb on - strandat 19.436 kb on - strandat 19.436 kb on - strandat 19.436 kb on - strandat 19.436 kb on - strandat 19.436 kb on - strandat 19.436 kb on - strandat 19.436 kb on - strandat 19.436 kb on - strandat 19.436 kb on - strandat 19.436 kb on - strandat 19.436 kb on - strandat 19.436 kb on - strandat 19.436 kb on - strandat 19.436 kb on - strandat 19.436 kb on - strandat 19.516 kb on + strandat 19.516 kb on + strandat 19.517 kb on - strandat 19.538 kb on + strandat 19.538 kb on + strandat 19.539 kb on - strandat 19.539 kb on - strandat 19.899 kb on + strand, within GFF4390at 19.899 kb on + strand, within GFF4390at 19.899 kb on + strand, within GFF4390at 19.899 kb on + strand, within GFF4390at 19.899 kb on + strand, within GFF4390at 19.899 kb on + strand, within GFF4390at 19.899 kb on + strand, within GFF4390at 19.899 kb on + strand, within GFF4390at 19.899 kb on + strand, within GFF4390at 19.899 kb on + strand, within GFF4390at 19.899 kb on + strand, within GFF4390at 19.899 kb on + strand, within GFF4390at 19.899 kb on + strand, within GFF4390at 19.899 kb on + strand, within GFF4390at 19.899 kb on + strand, within GFF4390at 19.899 kb on + strand, within GFF4390at 19.899 kb on + strand, within GFF4390at 19.900 kb on - strand, within GFF4390at 19.900 kb on - strand, within GFF4390at 19.900 kb on - strand, within GFF4390at 19.900 kb on - strand, within GFF4390at 19.900 kb on - strand, within GFF4390at 19.900 kb on - strand, within GFF4390at 19.900 kb on - strand, within GFF4390at 19.900 kb on - strand, within GFF4390at 19.900 kb on - strand, within GFF4390at 19.900 kb on - strand, within GFF4390at 19.900 kb on - strand, within GFF4390at 19.900 kb on - strand, within GFF4390at 19.900 kb on - strand, within GFF4390at 19.900 kb on - strand, within GFF4390at 19.900 kb on - strand, within GFF4390at 19.900 kb on - strand, within GFF4390at 19.900 kb on - strand, within GFF4390at 19.900 kb on - strand, within GFF4390

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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16,250 - GFF4388 0.26 -0.0
16,250 - GFF4388 0.26 -0.2
16,250 - GFF4388 0.26 +0.7
16,250 - GFF4388 0.26 -0.2
16,250 - GFF4388 0.26 +0.2
16,250 - GFF4388 0.26 -0.5
16,250 - GFF4388 0.26 -0.5
16,250 - GFF4388 0.26 -0.2
16,250 - GFF4388 0.26 +1.0
16,250 - GFF4388 0.26 -0.3
16,250 - GFF4388 0.26 +0.2
16,250 - GFF4388 0.26 -0.4
16,250 - GFF4388 0.26 +0.5
16,250 - GFF4388 0.26 +1.2
16,400 - GFF4388 0.51 +0.1
16,400 - GFF4388 0.51 +0.0
16,400 - GFF4388 0.51 -0.4
16,400 - GFF4388 0.51 +0.1
16,400 - GFF4388 0.51 -0.5
16,478 + GFF4388 0.64 -0.7
16,478 + GFF4388 0.64 +0.4
16,478 + GFF4388 0.64 +0.0
16,478 + GFF4388 0.64 -0.0
16,478 + GFF4388 0.64 -0.2
16,478 + GFF4388 0.64 -0.2
16,479 - GFF4388 0.64 -0.8
16,479 - GFF4388 0.64 +0.5
16,479 - GFF4388 0.64 -0.3
16,479 - GFF4388 0.64 -1.2
16,479 - GFF4388 0.64 +0.4
16,516 - GFF4388 0.70 -0.5
16,726 + -0.4
16,726 + +0.1
16,726 + -0.3
16,726 + -0.3
16,726 + +0.2
16,726 + -0.3
16,727 - +1.2
16,727 - +0.9
16,727 - -0.3
16,727 - -0.3
16,727 - -0.2
16,727 - -0.3
16,859 + +0.9
16,859 + -0.4
16,859 + +0.3
16,859 + +0.1
16,859 + -0.4
16,859 + -0.8
16,860 - +1.4
16,860 - -0.3
16,860 - -0.5
17,049 + -0.8
17,049 + -0.0
17,050 - +0.2
17,050 - +0.6
17,329 + +0.3
17,329 + -0.5
17,329 + -0.2
17,330 - +0.3
17,447 + GFF4389 0.16 -0.6
17,447 + GFF4389 0.16 -0.8
17,447 + GFF4389 0.16 +1.5
17,495 + GFF4389 0.18 -1.3
17,495 + GFF4389 0.18 +1.3
17,495 + GFF4389 0.18 -0.1
17,496 - GFF4389 0.18 -0.3
17,496 - GFF4389 0.18 -2.1
17,496 - GFF4389 0.18 +0.3
17,496 - GFF4389 0.18 +0.1
17,618 + GFF4389 0.24 -0.2
17,618 + GFF4389 0.24 -0.1
17,618 + GFF4389 0.24 -0.9
17,618 + GFF4389 0.24 -1.0
17,618 + GFF4389 0.24 -1.7
17,618 + GFF4389 0.24 -0.2
17,619 - GFF4389 0.24 +0.5
17,619 - GFF4389 0.24 -0.1
17,619 - GFF4389 0.24 -1.5
17,619 - GFF4389 0.24 +0.5
17,619 - GFF4389 0.24 +0.1
17,619 - GFF4389 0.24 -0.1
17,619 - GFF4389 0.24 -0.8
17,619 - GFF4389 0.24 +0.1
17,619 - GFF4389 0.24 +0.3
17,655 + GFF4389 0.26 +1.8
17,655 + GFF4389 0.26 -0.3
17,655 + GFF4389 0.26 -2.3
17,656 - GFF4389 0.26 +2.5
17,656 - GFF4389 0.26 -0.5
17,656 - GFF4389 0.26 -0.5
17,656 - GFF4389 0.26 +1.6
17,656 - GFF4389 0.26 +0.2
17,656 - GFF4389 0.26 -0.2
17,771 + GFF4389 0.32 +0.2
17,771 + GFF4389 0.32 -0.3
17,771 + GFF4389 0.32 -0.0
17,771 + GFF4389 0.32 -0.7
17,771 + GFF4389 0.32 -0.8
17,771 + GFF4389 0.32 +0.2
17,914 + GFF4389 0.39 -0.2
17,946 + GFF4389 0.41 -0.7
17,946 + GFF4389 0.41 -0.2
17,947 - GFF4389 0.41 +0.1
17,947 - GFF4389 0.41 -0.6
17,947 - GFF4389 0.41 +0.5
18,033 + GFF4389 0.45 -0.3
18,033 + GFF4389 0.45 +1.8
18,033 + GFF4389 0.45 -1.0
18,034 - GFF4389 0.45 -0.4
18,034 - GFF4389 0.45 -1.0
18,252 - GFF4389 0.56 -0.2
18,252 - GFF4389 0.56 +0.4
18,252 - GFF4389 0.56 -1.1
18,323 + GFF4389 0.60 -1.0
18,323 + GFF4389 0.60 -0.4
18,323 + GFF4389 0.60 +0.9
18,413 + GFF4389 0.64 +0.6
18,414 - GFF4389 0.64 -0.1
18,414 - GFF4389 0.64 -0.3
18,414 - GFF4389 0.64 +0.5
18,552 + GFF4389 0.71 -0.6
18,552 + GFF4389 0.71 +2.0
18,552 + GFF4389 0.71 +0.2
18,553 - GFF4389 0.71 -0.7
18,553 - GFF4389 0.71 -0.6
18,553 - GFF4389 0.71 -0.9
18,593 + GFF4389 0.73 -0.5
18,593 + GFF4389 0.73 +0.3
18,593 + GFF4389 0.73 +1.2
18,593 + GFF4389 0.73 -1.9
18,593 + GFF4389 0.73 -0.0
18,593 + GFF4389 0.73 -0.9
18,593 + GFF4389 0.73 -0.7
18,594 - GFF4389 0.73 -1.7
18,594 - GFF4389 0.73 +1.4
18,819 + GFF4389 0.85 +1.8
18,819 + GFF4389 0.85 +0.2
18,819 + GFF4389 0.85 -0.4
18,819 + GFF4389 0.85 -0.2
18,819 + GFF4389 0.85 -0.9
18,819 + GFF4389 0.85 +0.2
18,819 + GFF4389 0.85 +0.3
18,882 + GFF4389 0.88 -0.5
18,882 + GFF4389 0.88 +0.5
18,882 + GFF4389 0.88 -1.1
18,882 + GFF4389 0.88 +0.1
18,882 + GFF4389 0.88 -0.1
18,882 + GFF4389 0.88 -0.2
18,882 + GFF4389 0.88 -1.7
18,882 + GFF4389 0.88 +0.1
18,883 - GFF4389 0.88 -0.1
18,883 - GFF4389 0.88 +0.2
18,883 - GFF4389 0.88 -0.7
18,883 - GFF4389 0.88 -0.6
18,883 - GFF4389 0.88 -0.8
18,944 + +1.8
18,944 + -0.3
18,944 + -0.2
18,945 - -0.2
18,945 - -0.1
18,945 - -1.1
18,945 - +1.0
18,945 - +1.3
18,945 - +0.3
18,977 + +0.8
18,978 - +0.2
19,103 - -0.2
19,103 - +1.0
19,103 - -2.5
19,103 - -0.4
19,158 + +0.3
19,158 + +0.3
19,159 - -0.2
19,235 + -0.8
19,236 - -0.4
19,236 - +0.0
19,236 - +0.4
19,236 - -0.5
19,325 + -0.8
19,325 + -0.2
19,325 + -0.4
19,325 + -0.2
19,325 + -2.5
19,325 + -0.8
19,325 + +1.3
19,325 + +0.9
19,325 + -0.4
19,325 + +0.5
19,325 + -0.3
19,325 + -0.3
19,325 + +0.8
19,325 + +1.2
19,325 + -0.4
19,325 + +0.0
19,325 + -0.4
19,325 + -0.1
19,325 + -1.7
19,325 + +1.4
19,325 + -0.3
19,326 - +0.2
19,326 - -0.3
19,326 - +0.2
19,326 - -0.8
19,326 - -0.2
19,326 - -0.4
19,326 - -0.2
19,326 - -1.0
19,326 - +0.3
19,326 - -0.3
19,326 - +1.0
19,326 - -0.1
19,326 - -0.4
19,326 - -0.1
19,326 - -1.5
19,326 - -0.8
19,326 - -0.4
19,326 - +0.0
19,329 + -1.2
19,329 + -0.1
19,329 + -1.0
19,329 + -0.0
19,329 + -0.8
19,329 + +0.8
19,329 + -0.1
19,329 + -0.3
19,329 + +1.0
19,329 + -2.3
19,329 + +1.8
19,329 + +0.5
19,330 - +1.2
19,330 - -0.5
19,330 - +0.3
19,330 - +0.2
19,330 - +0.2
19,330 - -0.3
19,330 - +0.5
19,330 - +0.3
19,330 - -0.2
19,330 - +0.0
19,330 - -0.7
19,330 - +2.1
19,330 - +0.2
19,330 - +0.2
19,330 - +0.1
19,427 + -0.6
19,427 + -0.3
19,427 + -1.5
19,428 - -0.4
19,428 - +0.4
19,428 - +0.0
19,428 - +0.5
19,428 - -0.9
19,428 - +0.1
19,435 + +0.2
19,435 + +0.8
19,435 + -0.5
19,435 + -1.0
19,435 + +0.0
19,436 - -0.9
19,436 - -0.4
19,436 - -0.5
19,436 - -0.2
19,436 - -1.0
19,436 - -0.6
19,436 - -0.5
19,436 - +0.4
19,436 - -0.3
19,436 - +0.0
19,436 - -0.2
19,436 - -0.2
19,436 - -0.3
19,436 - +0.8
19,436 - +0.8
19,436 - -0.7
19,516 + -0.9
19,516 + +0.1
19,517 - -0.2
19,538 + +1.5
19,538 + +0.8
19,539 - +1.4
19,539 - -1.0
19,899 + GFF4390 0.35 -0.1
19,899 + GFF4390 0.35 +0.1
19,899 + GFF4390 0.35 +0.3
19,899 + GFF4390 0.35 -0.5
19,899 + GFF4390 0.35 +0.2
19,899 + GFF4390 0.35 +0.5
19,899 + GFF4390 0.35 +0.8
19,899 + GFF4390 0.35 -0.1
19,899 + GFF4390 0.35 +0.2
19,899 + GFF4390 0.35 -0.1
19,899 + GFF4390 0.35 -0.1
19,899 + GFF4390 0.35 -0.9
19,899 + GFF4390 0.35 +1.2
19,899 + GFF4390 0.35 +0.6
19,899 + GFF4390 0.35 -2.1
19,899 + GFF4390 0.35 +0.1
19,899 + GFF4390 0.35 +1.2
19,900 - GFF4390 0.36 -0.5
19,900 - GFF4390 0.36 +0.5
19,900 - GFF4390 0.36 +0.1
19,900 - GFF4390 0.36 +0.6
19,900 - GFF4390 0.36 -1.0
19,900 - GFF4390 0.36 +0.4
19,900 - GFF4390 0.36 +0.9
19,900 - GFF4390 0.36 -0.6
19,900 - GFF4390 0.36 +0.9
19,900 - GFF4390 0.36 -0.3
19,900 - GFF4390 0.36 -0.8
19,900 - GFF4390 0.36 +1.6
19,900 - GFF4390 0.36 -1.2
19,900 - GFF4390 0.36 +0.3
19,900 - GFF4390 0.36 -0.6
19,900 - GFF4390 0.36 -0.0
19,900 - GFF4390 0.36 -0.5
19,900 - GFF4390 0.36 +0.2

Or see this region's nucleotide sequence