Strain Fitness in Variovorax sp. SCN45 around GFF4068

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4067 and GFF4068 are separated by 44 nucleotidesGFF4068 and GFF4069 overlap by 4 nucleotidesGFF4069 and GFF4070 are separated by 191 nucleotides GFF4067 - FIG00897050: hypothetical protein, at 281,360 to 283,003 GFF4067 GFF4068 - Heavy metal sensor histidine kinase, at 283,048 to 284,445 GFF4068 GFF4069 - DNA-binding heavy metal response regulator, at 284,442 to 285,125 GFF4069 GFF4070 - no description, at 285,317 to 285,712 GFF4070 Position (kb) 283 284 285Strain fitness (log2 ratio) -2 -1 0 1 2at 282.083 kb on + strand, within GFF4067at 282.143 kb on + strand, within GFF4067at 282.143 kb on + strand, within GFF4067at 282.144 kb on - strand, within GFF4067at 282.144 kb on - strand, within GFF4067at 282.266 kb on + strand, within GFF4067at 282.266 kb on + strand, within GFF4067at 282.267 kb on - strand, within GFF4067at 282.267 kb on - strand, within GFF4067at 282.267 kb on - strand, within GFF4067at 282.267 kb on - strand, within GFF4067at 282.281 kb on + strand, within GFF4067at 282.282 kb on - strand, within GFF4067at 282.306 kb on - strand, within GFF4067at 282.306 kb on - strand, within GFF4067at 282.587 kb on + strand, within GFF4067at 282.587 kb on + strand, within GFF4067at 282.588 kb on - strand, within GFF4067at 282.588 kb on - strand, within GFF4067at 282.588 kb on - strand, within GFF4067at 282.588 kb on - strand, within GFF4067at 282.731 kb on + strand, within GFF4067at 282.732 kb on - strand, within GFF4067at 282.732 kb on - strand, within GFF4067at 282.732 kb on - strand, within GFF4067at 282.732 kb on - strand, within GFF4067at 282.807 kb on + strand, within GFF4067at 282.807 kb on + strand, within GFF4067at 282.807 kb on + strand, within GFF4067at 282.807 kb on + strand, within GFF4067at 282.808 kb on - strand, within GFF4067at 282.808 kb on - strand, within GFF4067at 282.833 kb on + strand, within GFF4067at 282.834 kb on - strand, within GFF4067at 283.332 kb on - strand, within GFF4068at 283.721 kb on + strand, within GFF4068at 283.721 kb on + strand, within GFF4068at 283.787 kb on + strand, within GFF4068at 283.788 kb on - strand, within GFF4068at 283.996 kb on + strand, within GFF4068at 283.996 kb on + strand, within GFF4068at 283.996 kb on + strand, within GFF4068at 283.996 kb on + strand, within GFF4068at 283.996 kb on + strand, within GFF4068at 283.996 kb on + strand, within GFF4068at 283.996 kb on + strand, within GFF4068at 283.997 kb on - strand, within GFF4068at 284.088 kb on - strand, within GFF4068at 284.279 kb on + strand, within GFF4068at 284.280 kb on - strand, within GFF4068at 284.476 kb on + strandat 284.476 kb on + strandat 284.477 kb on - strandat 284.477 kb on - strandat 284.477 kb on - strandat 284.749 kb on + strand, within GFF4069at 284.749 kb on + strand, within GFF4069at 284.749 kb on + strand, within GFF4069at 284.750 kb on - strand, within GFF4069at 284.750 kb on - strand, within GFF4069at 284.750 kb on - strand, within GFF4069at 284.836 kb on + strand, within GFF4069at 284.837 kb on - strand, within GFF4069at 285.082 kb on + strandat 285.136 kb on + strandat 285.137 kb on - strandat 285.163 kb on - strandat 285.172 kb on + strandat 285.172 kb on + strandat 285.205 kb on - strandat 285.208 kb on + strandat 285.209 kb on - strandat 285.313 kb on + strandat 285.313 kb on + strandat 285.313 kb on + strandat 285.313 kb on + strandat 285.313 kb on + strandat 285.313 kb on + strandat 285.313 kb on + strandat 285.314 kb on - strandat 285.314 kb on - strandat 285.314 kb on - strandat 285.314 kb on - strandat 285.440 kb on + strand, within GFF4070at 285.440 kb on + strand, within GFF4070at 285.441 kb on - strand, within GFF4070at 285.441 kb on - strand, within GFF4070

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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282,083 + GFF4067 0.44 -1.6
282,143 + GFF4067 0.48 -1.6
282,143 + GFF4067 0.48 -0.3
282,144 - GFF4067 0.48 +0.6
282,144 - GFF4067 0.48 -0.1
282,266 + GFF4067 0.55 +1.7
282,266 + GFF4067 0.55 -0.3
282,267 - GFF4067 0.55 -0.9
282,267 - GFF4067 0.55 -1.3
282,267 - GFF4067 0.55 +0.4
282,267 - GFF4067 0.55 -2.1
282,281 + GFF4067 0.56 +0.9
282,282 - GFF4067 0.56 -0.2
282,306 - GFF4067 0.58 -0.0
282,306 - GFF4067 0.58 +0.2
282,587 + GFF4067 0.75 -0.4
282,587 + GFF4067 0.75 -0.5
282,588 - GFF4067 0.75 -1.5
282,588 - GFF4067 0.75 +2.1
282,588 - GFF4067 0.75 -0.0
282,588 - GFF4067 0.75 +0.8
282,731 + GFF4067 0.83 -0.0
282,732 - GFF4067 0.83 -0.1
282,732 - GFF4067 0.83 +0.2
282,732 - GFF4067 0.83 -0.9
282,732 - GFF4067 0.83 -0.6
282,807 + GFF4067 0.88 -0.4
282,807 + GFF4067 0.88 -1.5
282,807 + GFF4067 0.88 -0.1
282,807 + GFF4067 0.88 -0.5
282,808 - GFF4067 0.88 -0.7
282,808 - GFF4067 0.88 +0.2
282,833 + GFF4067 0.90 -0.5
282,834 - GFF4067 0.90 -0.3
283,332 - GFF4068 0.20 -0.6
283,721 + GFF4068 0.48 -0.5
283,721 + GFF4068 0.48 -0.7
283,787 + GFF4068 0.53 +0.2
283,788 - GFF4068 0.53 -0.7
283,996 + GFF4068 0.68 -0.8
283,996 + GFF4068 0.68 -0.3
283,996 + GFF4068 0.68 +0.8
283,996 + GFF4068 0.68 +0.5
283,996 + GFF4068 0.68 -0.7
283,996 + GFF4068 0.68 +0.1
283,996 + GFF4068 0.68 -1.1
283,997 - GFF4068 0.68 +0.4
284,088 - GFF4068 0.74 -0.9
284,279 + GFF4068 0.88 +1.7
284,280 - GFF4068 0.88 -0.2
284,476 + +1.3
284,476 + -0.7
284,477 - -0.9
284,477 - +0.6
284,477 - +1.1
284,749 + GFF4069 0.45 -0.3
284,749 + GFF4069 0.45 -0.5
284,749 + GFF4069 0.45 +0.4
284,750 - GFF4069 0.45 -1.0
284,750 - GFF4069 0.45 -0.3
284,750 - GFF4069 0.45 -1.1
284,836 + GFF4069 0.58 -0.5
284,837 - GFF4069 0.58 +1.2
285,082 + -0.8
285,136 + -0.2
285,137 - +0.1
285,163 - -0.6
285,172 + +1.4
285,172 + +0.0
285,205 - +0.5
285,208 + -0.2
285,209 - +0.6
285,313 + -0.4
285,313 + -0.0
285,313 + -0.1
285,313 + +0.1
285,313 + -0.8
285,313 + +0.4
285,313 + +0.4
285,314 - -0.8
285,314 - +0.2
285,314 - -1.0
285,314 - +0.0
285,440 + GFF4070 0.31 -0.3
285,440 + GFF4070 0.31 -1.0
285,441 - GFF4070 0.31 -0.5
285,441 - GFF4070 0.31 -0.6

Or see this region's nucleotide sequence