Strain Fitness in Variovorax sp. SCN45 around GFF3289

Experiment: M9 with Supernatant from Cyptococcus

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus
114,215	+		GFF3287	0.62	-1.3
114,215	+		GFF3287	0.62	-1.3
114,215	+		GFF3287	0.62	-0.7
114,215	+		GFF3287	0.62	+0.6
114,215	+		GFF3287	0.62	-0.2
114,215	+		GFF3287	0.62	-0.9
114,215	+		GFF3287	0.62	+1.5
114,215	+		GFF3287	0.62	+0.3
114,215	+		GFF3287	0.62	-2.3
114,215	+		GFF3287	0.62	-0.0
114,215	+		GFF3287	0.62	-0.3
114,216	-		GFF3287	0.62	-0.1
114,216	-		GFF3287	0.62	-0.3
114,216	-		GFF3287	0.62	+1.2
114,216	-		GFF3287	0.62	-1.1
114,216	-		GFF3287	0.62	-0.3
114,216	-		GFF3287	0.62	-0.4
114,216	-		GFF3287	0.62	+0.8
114,216	-		GFF3287	0.62	+0.6
114,216	-		GFF3287	0.62	-0.2
114,216	-		GFF3287	0.62	-0.2
114,216	-		GFF3287	0.62	-0.4
114,216	-		GFF3287	0.62	+1.6
114,216	-		GFF3287	0.62	-0.1
114,216	-		GFF3287	0.62	-0.2
114,216	-		GFF3287	0.62	+1.3
114,245	+		GFF3287	0.68	-1.8
114,245	+		GFF3287	0.68	-1.4
114,245	+		GFF3287	0.68	+0.3
114,245	+		GFF3287	0.68	+1.8
114,245	+		GFF3287	0.68	+0.7
114,246	-		GFF3287	0.68	+0.8
114,246	-		GFF3287	0.68	-0.8
114,246	-		GFF3287	0.68	+0.1
114,246	-		GFF3287	0.68	+0.0
114,460	+				+1.0
114,460	+				-0.6
114,460	+				+0.4
114,461	-				+0.0
114,461	-				+0.1
114,639	+		GFF3288	0.23	-1.1
114,639	+		GFF3288	0.23	-0.0
114,639	+		GFF3288	0.23	-1.1
114,639	+		GFF3288	0.23	-1.1
114,639	+		GFF3288	0.23	-1.4
114,639	+		GFF3288	0.23	-0.9
114,639	+		GFF3288	0.23	+0.3
114,639	+		GFF3288	0.23	-0.0
114,639	+		GFF3288	0.23	-0.4
114,639	+		GFF3288	0.23	-2.4
114,640	-		GFF3288	0.23	-0.1
114,640	-		GFF3288	0.23	-0.4
114,640	-		GFF3288	0.23	+0.2
114,640	-		GFF3288	0.23	+0.3
114,640	-		GFF3288	0.23	-0.5
114,640	-		GFF3288	0.23	-0.2
114,640	-		GFF3288	0.23	-0.4
114,640	-		GFF3288	0.23	-0.4
114,640	-		GFF3288	0.23	-1.7
114,640	-		GFF3288	0.23	+1.1
114,640	-		GFF3288	0.23	-1.3
114,640	-		GFF3288	0.23	+1.7
114,640	-		GFF3288	0.23	+0.7
114,640	-		GFF3288	0.23	-1.6
114,640	-		GFF3288	0.23	+0.7
114,640	-		GFF3288	0.23	+1.5
114,660	+		GFF3288	0.27	+0.3
114,660	+		GFF3288	0.27	+1.7
114,660	+		GFF3288	0.27	-1.0
114,660	+		GFF3288	0.27	-1.8
114,660	+		GFF3288	0.27	+0.4
114,660	+		GFF3288	0.27	+0.2
114,660	+		GFF3288	0.27	-1.1
114,660	+		GFF3288	0.27	-0.9
114,660	+		GFF3288	0.27	-1.0
114,660	+		GFF3288	0.27	-0.3
114,660	+		GFF3288	0.27	-1.0
114,660	+		GFF3288	0.27	-0.1
114,661	-		GFF3288	0.27	-0.5
114,661	-		GFF3288	0.27	-0.1
114,661	-		GFF3288	0.27	+0.2
114,661	-		GFF3288	0.27	-0.9
114,661	-		GFF3288	0.27	-0.2
114,661	-		GFF3288	0.27	+0.7
114,661	-		GFF3288	0.27	-2.1
114,661	-		GFF3288	0.27	-1.1
114,661	-		GFF3288	0.27	+0.4
114,661	-		GFF3288	0.27	-0.7
114,661	-		GFF3288	0.27	+1.9
114,661	-		GFF3288	0.27	-0.9
114,876	+		GFF3288	0.72	+0.2
114,876	+		GFF3288	0.72	-0.6
114,876	+		GFF3288	0.72	-0.6
114,876	+		GFF3288	0.72	-0.9
114,876	+		GFF3288	0.72	+0.0
114,876	+		GFF3288	0.72	-0.7
114,876	+		GFF3288	0.72	-0.8
114,876	+		GFF3288	0.72	+0.0
114,876	+		GFF3288	0.72	-0.9
114,877	-		GFF3288	0.72	+0.6
114,877	-		GFF3288	0.72	-0.1
114,877	-		GFF3288	0.72	-0.3
114,877	-		GFF3288	0.72	+0.0
114,877	-		GFF3288	0.72	+0.3
114,877	-		GFF3288	0.72	-0.0
114,877	-		GFF3288	0.72	+0.1
114,877	-		GFF3288	0.72	+1.9
114,877	-		GFF3288	0.72	+0.4
114,877	-		GFF3288	0.72	-0.1
115,012	-				-0.8
115,012	-				-2.0
115,108	-				-1.4
115,176	+				-0.2
115,176	+				-2.3
115,177	-				-1.0
115,253	+				-1.7
115,253	+				+0.2
115,253	+				+0.5
115,253	+				+0.1
115,253	+				-0.0
115,253	+				+0.6
115,253	+				+0.0
115,253	+				+0.4
115,253	+				-0.3
115,253	+				+0.1
115,253	+				-0.0
115,254	-				-0.6
115,254	-				+2.5
115,254	-				-0.2
115,254	-				-0.6
115,254	-				+0.7
115,254	-				+1.6
115,254	-				-0.1
115,254	-				+1.5
115,254	-				-2.4
115,254	-				+0.3
115,254	-				-2.6
115,254	-				+1.9
115,254	-				+0.5
115,724	+		GFF3289	0.45	-0.1
115,724	+		GFF3289	0.45	+0.9
115,724	+		GFF3289	0.45	+0.1
115,724	+		GFF3289	0.45	-0.3
115,724	+		GFF3289	0.45	+1.1
115,724	+		GFF3289	0.45	+0.3
115,725	-		GFF3289	0.45	+0.7
115,725	-		GFF3289	0.45	-1.8
115,725	-		GFF3289	0.45	+0.4
115,725	-		GFF3289	0.45	+0.1
115,725	-		GFF3289	0.45	+0.4
115,725	-		GFF3289	0.45	+0.6
115,889	+		GFF3289	0.58	+0.0
115,889	+		GFF3289	0.58	-0.3
115,889	+		GFF3289	0.58	+0.9
115,889	+		GFF3289	0.58	+0.2
115,889	+		GFF3289	0.58	+0.6
115,890	-		GFF3289	0.58	-0.0
115,890	-		GFF3289	0.58	+0.7
115,890	-		GFF3289	0.58	-1.3
115,890	-		GFF3289	0.58	+0.4
115,890	-		GFF3289	0.58	+2.1
115,890	-		GFF3289	0.58	+0.3
115,892	+		GFF3289	0.58	-0.4
115,892	+		GFF3289	0.58	+0.4
115,892	+		GFF3289	0.58	-0.6
115,892	+		GFF3289	0.58	-0.2
115,892	+		GFF3289	0.58	+0.5
115,892	+		GFF3289	0.58	+0.8
115,892	+		GFF3289	0.58	-0.4
115,893	-		GFF3289	0.59	-0.1
115,893	-		GFF3289	0.59	-0.4
115,893	-		GFF3289	0.59	+0.9
115,893	-		GFF3289	0.59	-0.4
115,893	-		GFF3289	0.59	-0.2
115,893	-		GFF3289	0.59	-1.1
116,183	+		GFF3289	0.83	+0.8
116,183	+		GFF3289	0.83	+0.0
116,184	-		GFF3289	0.83	+0.1
116,184	-		GFF3289	0.83	-0.4
116,184	-		GFF3289	0.83	-0.1
116,300	+				+0.4
116,300	+				-0.9
116,300	+				+1.3
116,300	+				+0.1
116,300	+				-0.6
116,300	+				-0.0
116,300	+				-0.2
116,300	+				-0.6
116,300	+				-0.4
116,300	+				-1.4
116,300	+				+1.7
116,300	+				-1.1
116,300	+				+0.5
116,300	+				-0.6
116,300	+				+0.5
116,300	+				+0.6
116,300	+				+0.9
116,300	+				+0.5
116,300	+				-0.4
116,300	+				-0.8
116,300	+				+0.8
116,301	-				-0.2
116,301	-				+0.2
116,301	-				+0.1
116,301	-				+0.6
116,301	-				+0.2
116,301	-				+0.1
116,301	-				-0.6
116,301	-				+0.2
116,301	-				+0.8
116,301	-				+0.9
116,301	-				+0.0
116,301	-				+0.3
116,301	-				-0.2
116,301	-				-1.5
116,301	-				-0.2
116,301	-				-0.1
116,301	-				-1.3
116,301	-				+0.2
116,301	-				+0.2
116,301	-				+0.0
116,322	-				-0.1
116,379	+				+0.3
116,953	+				+0.0
116,953	+				-1.3
116,953	+				+2.1
116,953	+				+1.8
116,953	+				+0.0
116,953	+				-0.3
116,954	-				+1.0
116,954	-				-1.7
116,954	-				-2.6
116,954	-				+0.3
116,954	-				+1.1
116,954	-				+0.3
116,954	-				-0.0
116,955	+				+0.1
116,955	+				+0.1
116,955	+				-0.1
116,955	+				+0.9
116,955	+				+0.2
116,955	+				-1.7
116,955	+				-0.4
116,955	+				-0.3
116,955	+				-0.2
116,955	+				+0.2
116,955	+				+1.2
116,955	+				-0.8
116,956	-				+0.1
116,956	-				+0.1
116,956	-				+0.6
116,956	-				-0.1
116,956	-				-1.4
116,956	-				-0.2
116,956	-				-0.3
116,956	-				+0.0
116,956	-				-0.1
116,956	-				+0.3
116,956	-				-0.7
116,956	-				+3.1
116,956	-				-0.6
116,956	-				+0.2
116,956	-				-1.1
116,956	-				-1.3
116,956	-				+0.2
116,956	-				+0.0
116,956	-				+0.0
117,022	+		GFF3291	0.10	-1.8
117,042	-		GFF3291	0.27	-0.7
117,042	-		GFF3291	0.27	-0.3
117,228	+		GFF3292	0.18	+0.1
117,228	+		GFF3292	0.18	-1.1
117,229	-		GFF3292	0.18	+1.2
117,229	-		GFF3292	0.18	-0.5
117,346	-		GFF3292	0.39	-2.6