Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2946 and GFF2947 overlap by 4 nucleotides GFF2947 and GFF2948 are separated by 10 nucleotides GFF2948 and GFF2949 are separated by 145 nucleotides GFF2949 and GFF2950 are separated by 7 nucleotides
GFF2946 - Regulator of competence-specific genes, at 371,387 to 371,797
GFF2946
GFF2947 - 3'-5' exonuclease, at 371,794 to 372,408
GFF2947
GFF2948 - salicylate esterase, at 372,419 to 373,147
GFF2948
GFF2949 - no description, at 373,293 to 373,619
GFF2949
GFF2950 - Arsenite/antimonite:H+ antiporter ArsB, at 373,627 to 374,919
GFF2950
Position (kb) 372
373
374 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 371.519 kb on + strand, within GFF2946 at 371.519 kb on + strand, within GFF2946 at 371.519 kb on + strand, within GFF2946 at 371.519 kb on + strand, within GFF2946 at 371.519 kb on + strand, within GFF2946 at 371.519 kb on + strand, within GFF2946 at 371.520 kb on - strand, within GFF2946 at 371.520 kb on - strand, within GFF2946 at 371.520 kb on - strand, within GFF2946 at 371.549 kb on + strand, within GFF2946 at 371.549 kb on + strand, within GFF2946 at 371.549 kb on + strand, within GFF2946 at 371.549 kb on + strand, within GFF2946 at 371.550 kb on - strand, within GFF2946 at 371.550 kb on - strand, within GFF2946 at 371.582 kb on + strand, within GFF2946 at 371.582 kb on + strand, within GFF2946 at 371.582 kb on + strand, within GFF2946 at 371.582 kb on + strand, within GFF2946 at 371.583 kb on - strand, within GFF2946 at 371.583 kb on - strand, within GFF2946 at 371.583 kb on - strand, within GFF2946 at 371.615 kb on + strand, within GFF2946 at 371.616 kb on - strand, within GFF2946 at 371.681 kb on + strand, within GFF2946 at 372.156 kb on - strand, within GFF2947 at 372.156 kb on - strand, within GFF2947 at 372.364 kb on + strand at 372.364 kb on + strand at 372.364 kb on + strand at 372.364 kb on + strand at 372.365 kb on - strand at 372.365 kb on - strand at 372.365 kb on - strand at 372.382 kb on + strand at 372.382 kb on + strand at 372.382 kb on + strand at 372.382 kb on + strand at 372.382 kb on + strand at 372.382 kb on + strand at 372.383 kb on - strand at 372.383 kb on - strand at 372.383 kb on - strand at 372.383 kb on - strand at 372.383 kb on - strand at 372.588 kb on + strand, within GFF2948 at 372.588 kb on + strand, within GFF2948 at 372.588 kb on + strand, within GFF2948 at 372.588 kb on + strand, within GFF2948 at 372.588 kb on + strand, within GFF2948 at 372.589 kb on - strand, within GFF2948 at 372.589 kb on - strand, within GFF2948 at 372.589 kb on - strand, within GFF2948 at 372.589 kb on - strand, within GFF2948 at 372.679 kb on - strand, within GFF2948 at 372.795 kb on + strand, within GFF2948 at 372.795 kb on + strand, within GFF2948 at 372.795 kb on + strand, within GFF2948 at 372.795 kb on + strand, within GFF2948 at 372.795 kb on + strand, within GFF2948 at 372.795 kb on + strand, within GFF2948 at 372.795 kb on + strand, within GFF2948 at 372.795 kb on + strand, within GFF2948 at 372.796 kb on - strand, within GFF2948 at 372.855 kb on + strand, within GFF2948 at 372.855 kb on + strand, within GFF2948 at 372.855 kb on + strand, within GFF2948 at 372.855 kb on + strand, within GFF2948 at 372.855 kb on + strand, within GFF2948 at 372.855 kb on + strand, within GFF2948 at 372.855 kb on + strand, within GFF2948 at 372.855 kb on + strand, within GFF2948 at 372.856 kb on - strand, within GFF2948 at 372.856 kb on - strand, within GFF2948 at 372.856 kb on - strand, within GFF2948 at 372.918 kb on + strand, within GFF2948 at 372.919 kb on - strand, within GFF2948 at 372.919 kb on - strand, within GFF2948 at 372.966 kb on + strand, within GFF2948 at 372.966 kb on + strand, within GFF2948 at 372.967 kb on - strand, within GFF2948 at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.184 kb on + strand at 373.184 kb on + strand at 373.185 kb on - strand at 373.185 kb on - strand at 373.185 kb on - strand at 373.185 kb on - strand at 373.207 kb on + strand at 373.207 kb on + strand at 373.509 kb on + strand, within GFF2949 at 373.509 kb on + strand, within GFF2949 at 373.510 kb on - strand, within GFF2949 at 373.762 kb on - strand, within GFF2950
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 371,519 + GFF2946 0.32 -0.8 371,519 + GFF2946 0.32 +0.0 371,519 + GFF2946 0.32 -2.1 371,519 + GFF2946 0.32 -1.1 371,519 + GFF2946 0.32 -0.1 371,519 + GFF2946 0.32 +1.9 371,520 - GFF2946 0.32 -2.3 371,520 - GFF2946 0.32 -0.2 371,520 - GFF2946 0.32 -0.5 371,549 + GFF2946 0.39 -0.4 371,549 + GFF2946 0.39 +0.1 371,549 + GFF2946 0.39 -0.3 371,549 + GFF2946 0.39 -0.3 371,550 - GFF2946 0.40 +0.6 371,550 - GFF2946 0.40 -1.3 371,582 + GFF2946 0.47 -0.2 371,582 + GFF2946 0.47 +0.2 371,582 + GFF2946 0.47 -1.0 371,582 + GFF2946 0.47 -2.5 371,583 - GFF2946 0.48 +0.0 371,583 - GFF2946 0.48 -0.5 371,583 - GFF2946 0.48 -0.2 371,615 + GFF2946 0.55 +0.9 371,616 - GFF2946 0.56 +0.2 371,681 + GFF2946 0.72 -0.6 372,156 - GFF2947 0.59 +0.1 372,156 - GFF2947 0.59 -0.5 372,364 + -0.5 372,364 + +1.2 372,364 + -0.5 372,364 + -0.2 372,365 - -0.2 372,365 - +0.9 372,365 - -0.6 372,382 + -0.2 372,382 + +0.4 372,382 + +0.3 372,382 + -0.4 372,382 + +0.0 372,382 + -0.5 372,383 - -1.7 372,383 - +0.9 372,383 - -1.0 372,383 - -1.2 372,383 - -1.5 372,588 + GFF2948 0.23 -0.1 372,588 + GFF2948 0.23 -1.7 372,588 + GFF2948 0.23 -0.4 372,588 + GFF2948 0.23 +0.6 372,588 + GFF2948 0.23 -3.0 372,589 - GFF2948 0.23 -1.2 372,589 - GFF2948 0.23 -0.4 372,589 - GFF2948 0.23 -0.5 372,589 - GFF2948 0.23 +1.2 372,679 - GFF2948 0.36 -0.4 372,795 + GFF2948 0.52 -0.4 372,795 + GFF2948 0.52 +1.0 372,795 + GFF2948 0.52 -0.1 372,795 + GFF2948 0.52 -0.8 372,795 + GFF2948 0.52 -1.0 372,795 + GFF2948 0.52 -0.3 372,795 + GFF2948 0.52 -2.1 372,795 + GFF2948 0.52 +0.5 372,796 - GFF2948 0.52 -0.1 372,855 + GFF2948 0.60 +0.2 372,855 + GFF2948 0.60 -1.2 372,855 + GFF2948 0.60 -2.5 372,855 + GFF2948 0.60 -0.0 372,855 + GFF2948 0.60 -2.1 372,855 + GFF2948 0.60 +1.3 372,855 + GFF2948 0.60 -0.3 372,855 + GFF2948 0.60 +0.4 372,856 - GFF2948 0.60 -0.3 372,856 - GFF2948 0.60 -0.4 372,856 - GFF2948 0.60 -2.2 372,918 + GFF2948 0.68 +0.0 372,919 - GFF2948 0.69 -0.6 372,919 - GFF2948 0.69 +3.0 372,966 + GFF2948 0.75 -1.2 372,966 + GFF2948 0.75 +2.6 372,967 - GFF2948 0.75 -1.9 373,134 + +0.4 373,134 + -1.0 373,134 + +0.5 373,134 + +0.4 373,134 + +0.2 373,134 + -0.5 373,134 + +0.5 373,134 + -0.7 373,134 + -0.2 373,134 + -0.1 373,134 + -1.1 373,134 + -3.1 373,134 + -0.5 373,134 + +1.2 373,134 + -0.3 373,134 + -0.3 373,134 + +1.4 373,134 + +0.9 373,134 + -0.4 373,134 + +0.8 373,134 + -0.3 373,134 + -0.5 373,134 + -1.4 373,134 + -0.2 373,134 + -0.1 373,134 + -0.2 373,134 + -0.6 373,134 + +0.4 373,135 - +0.4 373,135 - +0.0 373,135 - +0.3 373,135 - +0.3 373,135 - -0.3 373,135 - -0.8 373,135 - +0.4 373,135 - -1.5 373,135 - -0.2 373,135 - +1.9 373,135 - -0.3 373,135 - +0.0 373,135 - +1.1 373,135 - -0.4 373,135 - -0.4 373,135 - -1.5 373,135 - -0.7 373,135 - +0.6 373,135 - -0.4 373,135 - -1.5 373,135 - +0.1 373,135 - -0.1 373,135 - +0.4 373,135 - +0.3 373,135 - -1.0 373,135 - -0.1 373,135 - -0.9 373,135 - +0.1 373,138 + -1.8 373,138 + +0.4 373,138 + +0.1 373,138 + -0.6 373,138 + -0.2 373,138 + -0.1 373,138 + +1.9 373,138 + -1.2 373,138 + +2.2 373,138 + -0.6 373,138 + -3.0 373,138 + -0.7 373,138 + -1.8 373,138 + -0.4 373,138 + +0.0 373,138 + -1.7 373,138 + -0.6 373,138 + -0.5 373,139 - +0.2 373,139 - +0.1 373,139 - -1.1 373,139 - -0.3 373,139 - -0.2 373,139 - +0.2 373,139 - -2.2 373,139 - +0.1 373,139 - +0.1 373,139 - +1.1 373,139 - +2.2 373,139 - -0.5 373,139 - -0.4 373,139 - -0.4 373,139 - -0.4 373,139 - -0.2 373,139 - -0.4 373,139 - -0.7 373,139 - -0.0 373,139 - -0.2 373,139 - +0.5 373,139 - -0.2 373,139 - -1.5 373,184 + -0.6 373,184 + -0.6 373,185 - +0.9 373,185 - -1.4 373,185 - -1.5 373,185 - -0.9 373,207 + +0.4 373,207 + -0.4 373,509 + GFF2949 0.66 -3.0 373,509 + GFF2949 0.66 -0.7 373,510 - GFF2949 0.66 +0.9 373,762 - GFF2950 0.10 -1.3
Or see this region's nucleotide sequence