Strain Fitness in Variovorax sp. SCN45 around GFF2712

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2710 and GFF2711 are separated by 76 nucleotidesGFF2711 and GFF2712 are separated by 138 nucleotidesGFF2712 and GFF2713 are separated by 31 nucleotides GFF2710 - no description, at 142,368 to 142,796 GFF2710 GFF2711 - hypothetical protein, at 142,873 to 143,403 GFF2711 GFF2712 - no description, at 143,542 to 144,189 GFF2712 GFF2713 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 144,221 to 145,741 GFF2713 Position (kb) 143 144 145Strain fitness (log2 ratio) -2 -1 0 1at 143.108 kb on + strand, within GFF2711at 143.171 kb on + strand, within GFF2711at 143.171 kb on + strand, within GFF2711at 143.171 kb on + strand, within GFF2711at 143.171 kb on + strand, within GFF2711at 143.172 kb on - strand, within GFF2711at 143.414 kb on - strandat 143.492 kb on + strandat 143.509 kb on + strandat 143.509 kb on + strandat 143.634 kb on + strand, within GFF2712at 143.634 kb on + strand, within GFF2712at 143.634 kb on + strand, within GFF2712at 143.634 kb on + strand, within GFF2712at 143.716 kb on + strand, within GFF2712at 144.017 kb on + strand, within GFF2712at 144.018 kb on - strand, within GFF2712at 144.020 kb on + strand, within GFF2712at 144.020 kb on + strand, within GFF2712at 144.303 kb on + strandat 144.303 kb on + strandat 144.303 kb on + strandat 144.429 kb on + strand, within GFF2713at 144.756 kb on + strand, within GFF2713at 144.756 kb on + strand, within GFF2713at 144.757 kb on - strand, within GFF2713at 144.757 kb on - strand, within GFF2713at 144.757 kb on - strand, within GFF2713at 144.906 kb on + strand, within GFF2713at 144.906 kb on + strand, within GFF2713at 144.906 kb on + strand, within GFF2713at 144.906 kb on + strand, within GFF2713at 144.907 kb on - strand, within GFF2713at 144.907 kb on - strand, within GFF2713at 144.907 kb on - strand, within GFF2713at 145.083 kb on + strand, within GFF2713at 145.125 kb on + strand, within GFF2713at 145.176 kb on + strand, within GFF2713at 145.176 kb on + strand, within GFF2713at 145.176 kb on + strand, within GFF2713at 145.176 kb on + strand, within GFF2713at 145.176 kb on + strand, within GFF2713at 145.176 kb on + strand, within GFF2713at 145.177 kb on - strand, within GFF2713at 145.177 kb on - strand, within GFF2713at 145.177 kb on - strand, within GFF2713at 145.177 kb on - strand, within GFF2713at 145.177 kb on - strand, within GFF2713at 145.177 kb on - strand, within GFF2713at 145.177 kb on - strand, within GFF2713at 145.177 kb on - strand, within GFF2713

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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143,108 + GFF2711 0.44 -1.1
143,171 + GFF2711 0.56 -1.2
143,171 + GFF2711 0.56 -0.6
143,171 + GFF2711 0.56 -0.4
143,171 + GFF2711 0.56 -1.8
143,172 - GFF2711 0.56 +0.6
143,414 - -0.3
143,492 + -0.3
143,509 + -0.8
143,509 + -0.5
143,634 + GFF2712 0.14 +0.0
143,634 + GFF2712 0.14 -0.5
143,634 + GFF2712 0.14 -0.1
143,634 + GFF2712 0.14 -0.5
143,716 + GFF2712 0.27 +0.2
144,017 + GFF2712 0.73 -0.1
144,018 - GFF2712 0.73 -0.4
144,020 + GFF2712 0.74 -0.2
144,020 + GFF2712 0.74 -1.1
144,303 + -0.2
144,303 + -1.4
144,303 + +0.7
144,429 + GFF2713 0.14 -0.3
144,756 + GFF2713 0.35 -0.6
144,756 + GFF2713 0.35 +0.6
144,757 - GFF2713 0.35 -0.9
144,757 - GFF2713 0.35 +1.2
144,757 - GFF2713 0.35 +1.3
144,906 + GFF2713 0.45 -0.9
144,906 + GFF2713 0.45 -1.6
144,906 + GFF2713 0.45 +1.3
144,906 + GFF2713 0.45 +0.7
144,907 - GFF2713 0.45 +0.2
144,907 - GFF2713 0.45 -0.6
144,907 - GFF2713 0.45 -0.1
145,083 + GFF2713 0.57 -1.8
145,125 + GFF2713 0.59 +0.2
145,176 + GFF2713 0.63 -0.4
145,176 + GFF2713 0.63 -1.0
145,176 + GFF2713 0.63 +0.6
145,176 + GFF2713 0.63 -2.3
145,176 + GFF2713 0.63 +1.6
145,176 + GFF2713 0.63 +0.1
145,177 - GFF2713 0.63 -0.4
145,177 - GFF2713 0.63 +0.6
145,177 - GFF2713 0.63 -1.0
145,177 - GFF2713 0.63 -0.4
145,177 - GFF2713 0.63 +1.1
145,177 - GFF2713 0.63 -0.3
145,177 - GFF2713 0.63 -0.3
145,177 - GFF2713 0.63 +1.3

Or see this region's nucleotide sequence