Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2638 and GFF2639 are separated by 273 nucleotides GFF2639 and GFF2640 are separated by 28 nucleotides GFF2640 and GFF2641 are separated by 31 nucleotides
GFF2638 - Putative 2-component regulator, at 51,248 to 52,372
GFF2638
GFF2639 - Ferrichrome-iron receptor, at 52,646 to 54,940
GFF2639
GFF2640 - PKHD-type hydroxylase YbiX, at 54,969 to 55,655
GFF2640
GFF2641 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 55,687 to 56,538
GFF2641
Position (kb) 52
53
54
55 Strain fitness (log2 ratio) -2
-1
0
1
2 at 52.025 kb on + strand, within GFF2638 at 52.025 kb on + strand, within GFF2638 at 52.026 kb on - strand, within GFF2638 at 52.026 kb on - strand, within GFF2638 at 52.026 kb on - strand, within GFF2638 at 52.026 kb on - strand, within GFF2638 at 52.158 kb on + strand, within GFF2638 at 52.159 kb on - strand, within GFF2638 at 52.159 kb on - strand, within GFF2638 at 52.167 kb on + strand, within GFF2638 at 52.167 kb on + strand, within GFF2638 at 52.167 kb on + strand, within GFF2638 at 52.168 kb on - strand, within GFF2638 at 52.168 kb on - strand, within GFF2638 at 52.430 kb on - strand at 52.487 kb on + strand at 52.488 kb on + strand at 52.488 kb on + strand at 52.488 kb on + strand at 52.488 kb on + strand at 52.488 kb on + strand at 52.488 kb on + strand at 52.489 kb on - strand at 52.489 kb on - strand at 52.489 kb on - strand at 52.489 kb on - strand at 52.489 kb on - strand at 52.489 kb on - strand at 52.489 kb on - strand at 52.489 kb on - strand at 52.493 kb on + strand at 52.494 kb on - strand at 52.509 kb on + strand at 52.509 kb on + strand at 52.510 kb on - strand at 52.510 kb on - strand at 52.510 kb on - strand at 53.072 kb on + strand, within GFF2639 at 53.072 kb on + strand, within GFF2639 at 53.072 kb on + strand, within GFF2639 at 53.073 kb on - strand, within GFF2639 at 53.073 kb on - strand, within GFF2639 at 53.102 kb on + strand, within GFF2639 at 53.102 kb on + strand, within GFF2639 at 53.102 kb on + strand, within GFF2639 at 53.103 kb on - strand, within GFF2639 at 53.103 kb on - strand, within GFF2639 at 53.103 kb on - strand, within GFF2639 at 53.106 kb on - strand, within GFF2639 at 53.528 kb on + strand, within GFF2639 at 53.529 kb on - strand, within GFF2639 at 53.529 kb on - strand, within GFF2639 at 53.630 kb on + strand, within GFF2639 at 53.631 kb on - strand, within GFF2639 at 53.909 kb on + strand, within GFF2639 at 53.909 kb on + strand, within GFF2639 at 53.924 kb on + strand, within GFF2639 at 53.924 kb on + strand, within GFF2639 at 53.924 kb on + strand, within GFF2639 at 53.924 kb on + strand, within GFF2639 at 53.925 kb on - strand, within GFF2639 at 54.014 kb on + strand, within GFF2639 at 54.015 kb on - strand, within GFF2639 at 54.092 kb on + strand, within GFF2639 at 54.279 kb on - strand, within GFF2639 at 54.281 kb on + strand, within GFF2639 at 54.281 kb on + strand, within GFF2639 at 54.281 kb on + strand, within GFF2639 at 54.281 kb on + strand, within GFF2639 at 54.282 kb on - strand, within GFF2639 at 54.282 kb on - strand, within GFF2639 at 54.282 kb on - strand, within GFF2639 at 54.282 kb on - strand, within GFF2639 at 54.282 kb on - strand, within GFF2639 at 54.290 kb on + strand, within GFF2639 at 54.290 kb on + strand, within GFF2639 at 54.378 kb on - strand, within GFF2639 at 54.485 kb on + strand, within GFF2639 at 54.486 kb on - strand, within GFF2639 at 54.572 kb on + strand, within GFF2639 at 54.572 kb on + strand, within GFF2639 at 54.573 kb on - strand, within GFF2639 at 54.574 kb on + strand, within GFF2639 at 54.574 kb on + strand, within GFF2639 at 54.574 kb on + strand, within GFF2639 at 54.575 kb on - strand, within GFF2639 at 54.575 kb on - strand, within GFF2639 at 54.575 kb on - strand, within GFF2639 at 54.575 kb on - strand, within GFF2639 at 54.575 kb on - strand, within GFF2639 at 54.631 kb on - strand, within GFF2639 at 54.674 kb on + strand, within GFF2639 at 54.674 kb on + strand, within GFF2639 at 54.674 kb on + strand, within GFF2639 at 54.675 kb on - strand, within GFF2639 at 54.675 kb on - strand, within GFF2639 at 54.717 kb on - strand at 54.717 kb on - strand at 54.767 kb on + strand at 54.767 kb on + strand at 54.768 kb on - strand at 54.794 kb on + strand at 54.794 kb on + strand at 54.794 kb on + strand at 54.795 kb on - strand at 54.809 kb on + strand at 54.809 kb on + strand at 54.810 kb on - strand at 54.810 kb on - strand at 54.810 kb on - strand at 54.851 kb on + strand at 54.851 kb on + strand at 54.852 kb on - strand at 54.852 kb on - strand at 54.854 kb on + strand at 54.854 kb on + strand at 54.855 kb on - strand at 54.929 kb on + strand at 54.929 kb on + strand at 54.930 kb on - strand at 54.930 kb on - strand at 54.963 kb on + strand at 54.964 kb on - strand at 54.964 kb on - strand at 54.991 kb on + strand at 54.992 kb on - strand at 55.213 kb on - strand, within GFF2640 at 55.353 kb on + strand, within GFF2640 at 55.354 kb on - strand, within GFF2640 at 55.562 kb on - strand, within GFF2640 at 55.621 kb on - strand at 55.621 kb on - strand at 55.621 kb on - strand at 55.621 kb on - strand at 55.653 kb on + strand at 55.654 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 52,025 + GFF2638 0.69 -0.1 52,025 + GFF2638 0.69 -1.6 52,026 - GFF2638 0.69 -0.2 52,026 - GFF2638 0.69 +0.1 52,026 - GFF2638 0.69 -1.2 52,026 - GFF2638 0.69 +1.8 52,158 + GFF2638 0.81 -0.6 52,159 - GFF2638 0.81 -0.1 52,159 - GFF2638 0.81 -0.1 52,167 + GFF2638 0.82 -0.2 52,167 + GFF2638 0.82 +1.0 52,167 + GFF2638 0.82 -0.1 52,168 - GFF2638 0.82 +0.0 52,168 - GFF2638 0.82 +1.6 52,430 - -0.4 52,487 + -0.7 52,488 + +0.2 52,488 + -0.1 52,488 + -0.8 52,488 + +0.9 52,488 + +1.3 52,488 + -0.2 52,489 - -1.7 52,489 - -1.4 52,489 - +0.1 52,489 - -0.2 52,489 - +0.0 52,489 - +0.0 52,489 - -0.4 52,489 - -1.0 52,493 + -0.8 52,494 - +0.7 52,509 + -0.7 52,509 + +1.0 52,510 - -0.3 52,510 - -0.2 52,510 - -0.1 53,072 + GFF2639 0.19 -0.6 53,072 + GFF2639 0.19 -0.3 53,072 + GFF2639 0.19 -1.3 53,073 - GFF2639 0.19 -0.5 53,073 - GFF2639 0.19 +0.2 53,102 + GFF2639 0.20 -1.1 53,102 + GFF2639 0.20 -0.5 53,102 + GFF2639 0.20 +0.2 53,103 - GFF2639 0.20 +0.6 53,103 - GFF2639 0.20 -0.3 53,103 - GFF2639 0.20 +0.0 53,106 - GFF2639 0.20 -1.6 53,528 + GFF2639 0.38 -1.0 53,529 - GFF2639 0.38 -0.7 53,529 - GFF2639 0.38 +0.0 53,630 + GFF2639 0.43 -0.1 53,631 - GFF2639 0.43 -0.3 53,909 + GFF2639 0.55 -1.4 53,909 + GFF2639 0.55 +0.0 53,924 + GFF2639 0.56 -0.3 53,924 + GFF2639 0.56 -0.7 53,924 + GFF2639 0.56 -0.8 53,924 + GFF2639 0.56 -0.1 53,925 - GFF2639 0.56 +0.8 54,014 + GFF2639 0.60 -0.1 54,015 - GFF2639 0.60 +0.5 54,092 + GFF2639 0.63 +0.2 54,279 - GFF2639 0.71 -0.4 54,281 + GFF2639 0.71 -1.2 54,281 + GFF2639 0.71 +0.3 54,281 + GFF2639 0.71 +0.6 54,281 + GFF2639 0.71 -0.3 54,282 - GFF2639 0.71 -1.8 54,282 - GFF2639 0.71 +1.2 54,282 - GFF2639 0.71 -1.2 54,282 - GFF2639 0.71 -0.7 54,282 - GFF2639 0.71 +0.3 54,290 + GFF2639 0.72 +2.2 54,290 + GFF2639 0.72 +1.6 54,378 - GFF2639 0.75 -0.2 54,485 + GFF2639 0.80 +0.6 54,486 - GFF2639 0.80 +0.6 54,572 + GFF2639 0.84 -0.4 54,572 + GFF2639 0.84 +0.6 54,573 - GFF2639 0.84 -0.3 54,574 + GFF2639 0.84 -0.7 54,574 + GFF2639 0.84 -0.7 54,574 + GFF2639 0.84 -0.4 54,575 - GFF2639 0.84 -1.1 54,575 - GFF2639 0.84 -1.0 54,575 - GFF2639 0.84 -0.7 54,575 - GFF2639 0.84 -1.0 54,575 - GFF2639 0.84 -1.2 54,631 - GFF2639 0.86 -0.8 54,674 + GFF2639 0.88 +0.6 54,674 + GFF2639 0.88 -0.5 54,674 + GFF2639 0.88 -1.0 54,675 - GFF2639 0.88 +0.8 54,675 - GFF2639 0.88 -0.1 54,717 - -0.0 54,717 - -1.4 54,767 + -0.3 54,767 + -1.9 54,768 - -0.6 54,794 + -1.2 54,794 + +0.1 54,794 + -0.4 54,795 - -0.6 54,809 + -0.8 54,809 + -0.5 54,810 - +1.0 54,810 - -0.6 54,810 - -1.4 54,851 + +1.2 54,851 + -0.1 54,852 - +0.1 54,852 - -1.0 54,854 + -0.6 54,854 + +1.0 54,855 - +0.4 54,929 + +0.2 54,929 + -0.4 54,930 - +1.2 54,930 - -0.4 54,963 + +0.1 54,964 - +0.3 54,964 - +0.4 54,991 + -0.7 54,992 - -0.6 55,213 - GFF2640 0.36 -1.0 55,353 + GFF2640 0.56 +0.1 55,354 - GFF2640 0.56 -1.6 55,562 - GFF2640 0.86 -0.9 55,621 - +0.3 55,621 - -0.9 55,621 - -0.0 55,621 - -0.4 55,653 + -0.9 55,654 - -0.4
Or see this region's nucleotide sequence