Strain Fitness in Variovorax sp. SCN45 around GFF2555

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2553 and GFF2554 are separated by 7 nucleotidesGFF2554 and GFF2555 are separated by 4 nucleotidesGFF2555 and GFF2556 are separated by 127 nucleotidesGFF2556 and GFF2557 are separated by 73 nucleotides GFF2553 - FIG00933538: hypothetical protein, at 615,797 to 616,219 GFF2553 GFF2554 - Integral membrane protein, at 616,227 to 617,108 GFF2554 GFF2555 - FIG00932538: hypothetical protein, at 617,113 to 617,937 GFF2555 GFF2556 - UPF0337 family protein, at 618,065 to 618,262 GFF2556 GFF2557 - transport-associated, at 618,336 to 618,854 GFF2557 Position (kb) 617 618Strain fitness (log2 ratio) -2 -1 0 1 2at 616.115 kb on + strand, within GFF2553at 616.115 kb on + strand, within GFF2553at 616.115 kb on + strand, within GFF2553at 616.116 kb on - strand, within GFF2553at 616.116 kb on - strand, within GFF2553at 616.116 kb on - strand, within GFF2553at 616.116 kb on - strand, within GFF2553at 616.142 kb on + strand, within GFF2553at 616.142 kb on + strand, within GFF2553at 616.143 kb on - strand, within GFF2553at 616.143 kb on - strand, within GFF2553at 616.143 kb on - strand, within GFF2553at 616.455 kb on + strand, within GFF2554at 616.455 kb on + strand, within GFF2554at 616.455 kb on + strand, within GFF2554at 616.456 kb on - strand, within GFF2554at 616.456 kb on - strand, within GFF2554at 616.456 kb on - strand, within GFF2554at 616.456 kb on - strand, within GFF2554at 616.456 kb on - strand, within GFF2554at 616.456 kb on - strand, within GFF2554at 616.456 kb on - strand, within GFF2554at 616.479 kb on + strand, within GFF2554at 616.506 kb on + strand, within GFF2554at 616.507 kb on - strand, within GFF2554at 616.704 kb on + strand, within GFF2554at 616.704 kb on + strand, within GFF2554at 616.737 kb on + strand, within GFF2554at 616.738 kb on - strand, within GFF2554at 616.738 kb on - strand, within GFF2554at 616.738 kb on - strand, within GFF2554at 616.738 kb on - strand, within GFF2554at 616.755 kb on + strand, within GFF2554at 616.755 kb on + strand, within GFF2554at 616.755 kb on + strand, within GFF2554at 616.755 kb on + strand, within GFF2554at 616.755 kb on + strand, within GFF2554at 616.755 kb on + strand, within GFF2554at 616.755 kb on + strand, within GFF2554at 616.755 kb on + strand, within GFF2554at 616.755 kb on + strand, within GFF2554at 616.756 kb on - strand, within GFF2554at 616.756 kb on - strand, within GFF2554at 616.756 kb on - strand, within GFF2554at 616.756 kb on - strand, within GFF2554at 616.756 kb on - strand, within GFF2554at 616.756 kb on - strand, within GFF2554at 616.756 kb on - strand, within GFF2554at 616.756 kb on - strand, within GFF2554at 616.797 kb on + strand, within GFF2554at 616.797 kb on + strand, within GFF2554at 616.798 kb on - strand, within GFF2554at 616.798 kb on - strand, within GFF2554at 616.890 kb on + strand, within GFF2554at 616.890 kb on + strand, within GFF2554at 616.890 kb on + strand, within GFF2554at 616.890 kb on + strand, within GFF2554at 616.890 kb on + strand, within GFF2554at 616.891 kb on - strand, within GFF2554at 616.926 kb on + strand, within GFF2554at 616.926 kb on + strand, within GFF2554at 616.926 kb on + strand, within GFF2554at 616.926 kb on + strand, within GFF2554at 616.926 kb on + strand, within GFF2554at 616.927 kb on - strand, within GFF2554at 616.927 kb on - strand, within GFF2554at 616.927 kb on - strand, within GFF2554at 616.927 kb on - strand, within GFF2554at 616.927 kb on - strand, within GFF2554at 616.927 kb on - strand, within GFF2554at 616.927 kb on - strand, within GFF2554at 616.941 kb on + strand, within GFF2554at 616.941 kb on + strand, within GFF2554at 616.941 kb on + strand, within GFF2554at 616.941 kb on + strand, within GFF2554at 616.941 kb on + strand, within GFF2554at 616.941 kb on + strand, within GFF2554at 616.941 kb on + strand, within GFF2554at 616.941 kb on + strand, within GFF2554at 616.941 kb on + strand, within GFF2554at 616.941 kb on + strand, within GFF2554at 616.942 kb on - strand, within GFF2554at 616.942 kb on - strand, within GFF2554at 616.942 kb on - strand, within GFF2554at 616.942 kb on - strand, within GFF2554at 616.942 kb on - strand, within GFF2554at 616.942 kb on - strand, within GFF2554at 616.942 kb on - strand, within GFF2554at 617.368 kb on + strand, within GFF2555at 617.368 kb on + strand, within GFF2555at 617.369 kb on - strand, within GFF2555at 617.369 kb on - strand, within GFF2555at 617.369 kb on - strand, within GFF2555at 617.369 kb on - strand, within GFF2555at 617.369 kb on - strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.614 kb on + strand, within GFF2555at 617.614 kb on + strand, within GFF2555at 617.614 kb on + strand, within GFF2555at 617.614 kb on + strand, within GFF2555at 617.614 kb on + strand, within GFF2555at 617.615 kb on - strand, within GFF2555at 617.656 kb on + strand, within GFF2555at 617.656 kb on + strand, within GFF2555at 617.656 kb on + strand, within GFF2555at 617.656 kb on + strand, within GFF2555at 617.656 kb on + strand, within GFF2555at 617.656 kb on + strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.950 kb on + strandat 617.950 kb on + strandat 617.950 kb on + strandat 617.950 kb on + strandat 617.950 kb on + strandat 617.951 kb on - strandat 617.951 kb on - strandat 617.951 kb on - strandat 617.951 kb on - strandat 618.020 kb on - strandat 618.020 kb on - strandat 618.032 kb on + strandat 618.032 kb on + strandat 618.032 kb on + strandat 618.032 kb on + strandat 618.033 kb on - strandat 618.033 kb on - strandat 618.203 kb on + strand, within GFF2556at 618.203 kb on + strand, within GFF2556at 618.203 kb on + strand, within GFF2556at 618.203 kb on + strand, within GFF2556at 618.203 kb on + strand, within GFF2556at 618.203 kb on + strand, within GFF2556at 618.203 kb on + strand, within GFF2556at 618.203 kb on + strand, within GFF2556at 618.204 kb on - strand, within GFF2556at 618.204 kb on - strand, within GFF2556at 618.204 kb on - strand, within GFF2556at 618.204 kb on - strand, within GFF2556at 618.219 kb on - strand, within GFF2556at 618.500 kb on + strand, within GFF2557at 618.500 kb on + strand, within GFF2557at 618.708 kb on - strand, within GFF2557

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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616,115 + GFF2553 0.75 +0.2
616,115 + GFF2553 0.75 -0.5
616,115 + GFF2553 0.75 +0.5
616,116 - GFF2553 0.75 +0.3
616,116 - GFF2553 0.75 -1.1
616,116 - GFF2553 0.75 -1.3
616,116 - GFF2553 0.75 +0.7
616,142 + GFF2553 0.82 -0.9
616,142 + GFF2553 0.82 -0.0
616,143 - GFF2553 0.82 -1.5
616,143 - GFF2553 0.82 +0.1
616,143 - GFF2553 0.82 +0.0
616,455 + GFF2554 0.26 -1.0
616,455 + GFF2554 0.26 +0.7
616,455 + GFF2554 0.26 +0.6
616,456 - GFF2554 0.26 -1.7
616,456 - GFF2554 0.26 +0.3
616,456 - GFF2554 0.26 -1.8
616,456 - GFF2554 0.26 +0.3
616,456 - GFF2554 0.26 +1.9
616,456 - GFF2554 0.26 -1.5
616,456 - GFF2554 0.26 +0.9
616,479 + GFF2554 0.29 -0.7
616,506 + GFF2554 0.32 -0.4
616,507 - GFF2554 0.32 -1.0
616,704 + GFF2554 0.54 -1.2
616,704 + GFF2554 0.54 +0.1
616,737 + GFF2554 0.58 +0.6
616,738 - GFF2554 0.58 -0.7
616,738 - GFF2554 0.58 -0.2
616,738 - GFF2554 0.58 +0.7
616,738 - GFF2554 0.58 +0.0
616,755 + GFF2554 0.60 -0.6
616,755 + GFF2554 0.60 -0.3
616,755 + GFF2554 0.60 -0.8
616,755 + GFF2554 0.60 -1.0
616,755 + GFF2554 0.60 +1.9
616,755 + GFF2554 0.60 -0.9
616,755 + GFF2554 0.60 -1.3
616,755 + GFF2554 0.60 +0.3
616,755 + GFF2554 0.60 +0.5
616,756 - GFF2554 0.60 +0.2
616,756 - GFF2554 0.60 -0.5
616,756 - GFF2554 0.60 +0.0
616,756 - GFF2554 0.60 +1.2
616,756 - GFF2554 0.60 -0.5
616,756 - GFF2554 0.60 -0.1
616,756 - GFF2554 0.60 -0.8
616,756 - GFF2554 0.60 +0.0
616,797 + GFF2554 0.65 +0.3
616,797 + GFF2554 0.65 -1.7
616,798 - GFF2554 0.65 -0.0
616,798 - GFF2554 0.65 -0.3
616,890 + GFF2554 0.75 +0.2
616,890 + GFF2554 0.75 +0.4
616,890 + GFF2554 0.75 +0.5
616,890 + GFF2554 0.75 +0.4
616,890 + GFF2554 0.75 -1.0
616,891 - GFF2554 0.75 -0.4
616,926 + GFF2554 0.79 +0.5
616,926 + GFF2554 0.79 -0.1
616,926 + GFF2554 0.79 -0.4
616,926 + GFF2554 0.79 +0.1
616,926 + GFF2554 0.79 +0.2
616,927 - GFF2554 0.79 -0.1
616,927 - GFF2554 0.79 -0.3
616,927 - GFF2554 0.79 +1.0
616,927 - GFF2554 0.79 -1.2
616,927 - GFF2554 0.79 -1.9
616,927 - GFF2554 0.79 -0.4
616,927 - GFF2554 0.79 +0.2
616,941 + GFF2554 0.81 -0.5
616,941 + GFF2554 0.81 +0.4
616,941 + GFF2554 0.81 -0.4
616,941 + GFF2554 0.81 +0.6
616,941 + GFF2554 0.81 -0.0
616,941 + GFF2554 0.81 -0.1
616,941 + GFF2554 0.81 +0.5
616,941 + GFF2554 0.81 -0.1
616,941 + GFF2554 0.81 +0.9
616,941 + GFF2554 0.81 +0.1
616,942 - GFF2554 0.81 -0.1
616,942 - GFF2554 0.81 -0.5
616,942 - GFF2554 0.81 +1.9
616,942 - GFF2554 0.81 +1.9
616,942 - GFF2554 0.81 -0.6
616,942 - GFF2554 0.81 +0.5
616,942 - GFF2554 0.81 -0.9
617,368 + GFF2555 0.31 +1.6
617,368 + GFF2555 0.31 -0.1
617,369 - GFF2555 0.31 +0.2
617,369 - GFF2555 0.31 +0.1
617,369 - GFF2555 0.31 -0.1
617,369 - GFF2555 0.31 -0.1
617,369 - GFF2555 0.31 -1.5
617,515 + GFF2555 0.49 +1.4
617,515 + GFF2555 0.49 +0.2
617,515 + GFF2555 0.49 -0.6
617,515 + GFF2555 0.49 +0.2
617,515 + GFF2555 0.49 -1.1
617,515 + GFF2555 0.49 -0.3
617,515 + GFF2555 0.49 +1.0
617,515 + GFF2555 0.49 -0.2
617,516 - GFF2555 0.49 +1.3
617,516 - GFF2555 0.49 -0.2
617,516 - GFF2555 0.49 +0.3
617,516 - GFF2555 0.49 +1.7
617,516 - GFF2555 0.49 +0.5
617,516 - GFF2555 0.49 +0.6
617,516 - GFF2555 0.49 -1.0
617,516 - GFF2555 0.49 +0.7
617,516 - GFF2555 0.49 +0.0
617,516 - GFF2555 0.49 +0.0
617,516 - GFF2555 0.49 +1.1
617,614 + GFF2555 0.61 +0.2
617,614 + GFF2555 0.61 -0.4
617,614 + GFF2555 0.61 +0.6
617,614 + GFF2555 0.61 +0.5
617,614 + GFF2555 0.61 -1.1
617,615 - GFF2555 0.61 -0.3
617,656 + GFF2555 0.66 -0.6
617,656 + GFF2555 0.66 +1.4
617,656 + GFF2555 0.66 -0.3
617,656 + GFF2555 0.66 +0.9
617,656 + GFF2555 0.66 -0.4
617,656 + GFF2555 0.66 -0.8
617,657 - GFF2555 0.66 -0.6
617,657 - GFF2555 0.66 +0.1
617,657 - GFF2555 0.66 -0.6
617,657 - GFF2555 0.66 +0.1
617,657 - GFF2555 0.66 +1.6
617,657 - GFF2555 0.66 +0.3
617,657 - GFF2555 0.66 +0.5
617,657 - GFF2555 0.66 +1.9
617,950 + -0.7
617,950 + -0.4
617,950 + +2.5
617,950 + +1.4
617,950 + -0.1
617,951 - +1.0
617,951 - -0.8
617,951 - -0.8
617,951 - -1.8
618,020 - -0.9
618,020 - +0.6
618,032 + +0.4
618,032 + +0.8
618,032 + -0.1
618,032 + -0.1
618,033 - +0.2
618,033 - +0.1
618,203 + GFF2556 0.70 +0.7
618,203 + GFF2556 0.70 -0.3
618,203 + GFF2556 0.70 +1.6
618,203 + GFF2556 0.70 -0.1
618,203 + GFF2556 0.70 -0.1
618,203 + GFF2556 0.70 -0.6
618,203 + GFF2556 0.70 +0.3
618,203 + GFF2556 0.70 +0.9
618,204 - GFF2556 0.70 +1.9
618,204 - GFF2556 0.70 -0.7
618,204 - GFF2556 0.70 +0.5
618,204 - GFF2556 0.70 -0.8
618,219 - GFF2556 0.78 -0.2
618,500 + GFF2557 0.32 +1.4
618,500 + GFF2557 0.32 -0.7
618,708 - GFF2557 0.72 +0.5

Or see this region's nucleotide sequence