Strain Fitness in Variovorax sp. SCN45 around GFF2546

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2545 and GFF2546 are separated by 13 nucleotidesGFF2546 and GFF2547 are separated by 105 nucleotidesGFF2547 and GFF2548 are separated by 9 nucleotides GFF2545 - Ubiquinone biosynthesis regulatory protein kinase UbiB, at 607,775 to 609,340 GFF2545 GFF2546 - sodium-solute symporter, putative, at 609,354 to 610,805 GFF2546 GFF2547 - Type I antifreeze protein, at 610,911 to 611,255 GFF2547 GFF2548 - Uncharacterized membrane anchored protein Mext_4159, at 611,265 to 611,897 GFF2548 Position (kb) 609 610 611Strain fitness (log2 ratio) -2 -1 0 1 2at 609.291 kb on + strandat 609.338 kb on + strandat 609.338 kb on + strandat 609.339 kb on - strandat 609.339 kb on - strandat 609.339 kb on - strandat 609.378 kb on + strandat 609.378 kb on + strandat 609.378 kb on + strandat 609.378 kb on + strandat 609.378 kb on + strandat 609.378 kb on + strandat 609.379 kb on - strandat 609.379 kb on - strandat 609.379 kb on - strandat 609.379 kb on - strandat 609.379 kb on - strandat 609.408 kb on + strandat 609.408 kb on + strandat 609.408 kb on + strandat 609.408 kb on + strandat 609.409 kb on - strandat 609.409 kb on - strandat 609.409 kb on - strandat 609.409 kb on - strandat 609.409 kb on - strandat 609.409 kb on - strandat 609.633 kb on + strand, within GFF2546at 609.634 kb on - strand, within GFF2546at 609.663 kb on + strand, within GFF2546at 609.663 kb on + strand, within GFF2546at 609.663 kb on + strand, within GFF2546at 609.663 kb on + strand, within GFF2546at 609.663 kb on + strand, within GFF2546at 609.663 kb on + strand, within GFF2546at 609.663 kb on + strand, within GFF2546at 609.663 kb on + strand, within GFF2546at 609.664 kb on - strand, within GFF2546at 609.664 kb on - strand, within GFF2546at 609.664 kb on - strand, within GFF2546at 609.664 kb on - strand, within GFF2546at 609.664 kb on - strand, within GFF2546at 609.666 kb on + strand, within GFF2546at 609.666 kb on + strand, within GFF2546at 609.666 kb on + strand, within GFF2546at 609.679 kb on - strand, within GFF2546at 609.726 kb on + strand, within GFF2546at 609.726 kb on + strand, within GFF2546at 609.726 kb on + strand, within GFF2546at 609.726 kb on + strand, within GFF2546at 609.726 kb on + strand, within GFF2546at 609.726 kb on + strand, within GFF2546at 609.726 kb on + strand, within GFF2546at 609.726 kb on + strand, within GFF2546at 609.727 kb on - strand, within GFF2546at 609.727 kb on - strand, within GFF2546at 609.843 kb on + strand, within GFF2546at 609.843 kb on + strand, within GFF2546at 609.843 kb on + strand, within GFF2546at 609.843 kb on + strand, within GFF2546at 609.843 kb on + strand, within GFF2546at 609.843 kb on + strand, within GFF2546at 609.843 kb on + strand, within GFF2546at 609.844 kb on - strand, within GFF2546at 609.844 kb on - strand, within GFF2546at 609.844 kb on - strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.161 kb on + strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.162 kb on - strand, within GFF2546at 610.485 kb on + strand, within GFF2546at 610.485 kb on + strand, within GFF2546at 610.485 kb on + strand, within GFF2546at 610.485 kb on + strand, within GFF2546at 610.485 kb on + strand, within GFF2546at 610.485 kb on + strand, within GFF2546at 610.486 kb on - strand, within GFF2546at 610.486 kb on - strand, within GFF2546at 610.486 kb on - strand, within GFF2546at 610.486 kb on - strand, within GFF2546at 610.486 kb on - strand, within GFF2546at 610.486 kb on - strand, within GFF2546at 610.515 kb on + strand, within GFF2546at 610.515 kb on + strand, within GFF2546at 610.515 kb on + strand, within GFF2546at 610.515 kb on + strand, within GFF2546at 610.515 kb on + strand, within GFF2546at 610.515 kb on + strand, within GFF2546at 610.515 kb on + strand, within GFF2546at 610.515 kb on + strand, within GFF2546at 610.515 kb on + strand, within GFF2546at 610.515 kb on + strand, within GFF2546at 610.515 kb on + strand, within GFF2546at 610.515 kb on + strand, within GFF2546at 610.516 kb on - strand, within GFF2546at 610.516 kb on - strand, within GFF2546at 610.516 kb on - strand, within GFF2546at 610.516 kb on - strand, within GFF2546at 610.516 kb on - strand, within GFF2546at 610.536 kb on + strand, within GFF2546at 610.536 kb on + strand, within GFF2546at 610.537 kb on - strand, within GFF2546at 610.537 kb on - strand, within GFF2546at 610.584 kb on + strand, within GFF2546at 610.584 kb on + strand, within GFF2546at 610.584 kb on + strand, within GFF2546at 610.585 kb on - strand, within GFF2546at 610.585 kb on - strand, within GFF2546at 610.585 kb on - strand, within GFF2546at 610.585 kb on - strand, within GFF2546at 610.855 kb on - strandat 610.855 kb on - strandat 610.856 kb on + strandat 610.920 kb on + strandat 610.920 kb on + strandat 610.920 kb on + strandat 610.920 kb on + strandat 610.926 kb on + strandat 610.926 kb on + strandat 610.926 kb on + strandat 611.070 kb on + strand, within GFF2547at 611.070 kb on + strand, within GFF2547at 611.070 kb on + strand, within GFF2547at 611.070 kb on + strand, within GFF2547at 611.406 kb on + strand, within GFF2548at 611.553 kb on + strand, within GFF2548at 611.553 kb on + strand, within GFF2548at 611.553 kb on + strand, within GFF2548at 611.553 kb on + strand, within GFF2548at 611.553 kb on + strand, within GFF2548at 611.553 kb on + strand, within GFF2548at 611.727 kb on + strand, within GFF2548at 611.727 kb on + strand, within GFF2548at 611.760 kb on + strand, within GFF2548at 611.760 kb on + strand, within GFF2548

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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609,291 + -0.5
609,338 + -0.5
609,338 + +0.1
609,339 - -2.3
609,339 - +0.4
609,339 - -0.0
609,378 + +1.1
609,378 + -0.6
609,378 + -1.3
609,378 + +1.1
609,378 + +0.2
609,378 + -1.9
609,379 - +0.1
609,379 - +0.9
609,379 - +0.2
609,379 - +0.6
609,379 - +0.0
609,408 + +0.3
609,408 + -1.1
609,408 + -0.1
609,408 + +1.3
609,409 - -2.1
609,409 - +0.6
609,409 - -0.5
609,409 - -0.5
609,409 - +0.1
609,409 - -0.0
609,633 + GFF2546 0.19 -0.2
609,634 - GFF2546 0.19 +1.2
609,663 + GFF2546 0.21 +0.3
609,663 + GFF2546 0.21 +0.0
609,663 + GFF2546 0.21 +0.4
609,663 + GFF2546 0.21 +0.5
609,663 + GFF2546 0.21 +0.5
609,663 + GFF2546 0.21 +0.7
609,663 + GFF2546 0.21 -0.1
609,663 + GFF2546 0.21 +0.3
609,664 - GFF2546 0.21 +0.6
609,664 - GFF2546 0.21 +0.9
609,664 - GFF2546 0.21 +0.6
609,664 - GFF2546 0.21 +0.4
609,664 - GFF2546 0.21 +0.6
609,666 + GFF2546 0.21 -0.5
609,666 + GFF2546 0.21 -0.9
609,666 + GFF2546 0.21 -0.5
609,679 - GFF2546 0.22 -1.6
609,726 + GFF2546 0.26 -0.4
609,726 + GFF2546 0.26 +1.5
609,726 + GFF2546 0.26 +0.6
609,726 + GFF2546 0.26 -0.0
609,726 + GFF2546 0.26 +0.1
609,726 + GFF2546 0.26 +2.0
609,726 + GFF2546 0.26 +0.3
609,726 + GFF2546 0.26 -1.3
609,727 - GFF2546 0.26 +0.3
609,727 - GFF2546 0.26 -0.3
609,843 + GFF2546 0.34 -1.0
609,843 + GFF2546 0.34 -0.0
609,843 + GFF2546 0.34 -1.2
609,843 + GFF2546 0.34 -0.6
609,843 + GFF2546 0.34 -0.2
609,843 + GFF2546 0.34 +0.1
609,843 + GFF2546 0.34 +0.5
609,844 - GFF2546 0.34 -0.0
609,844 - GFF2546 0.34 +0.4
609,844 - GFF2546 0.34 +0.7
610,161 + GFF2546 0.56 -0.6
610,161 + GFF2546 0.56 -1.0
610,161 + GFF2546 0.56 -1.1
610,161 + GFF2546 0.56 -0.2
610,161 + GFF2546 0.56 +0.7
610,161 + GFF2546 0.56 +1.2
610,161 + GFF2546 0.56 -0.7
610,161 + GFF2546 0.56 +0.5
610,161 + GFF2546 0.56 +0.0
610,161 + GFF2546 0.56 +0.3
610,161 + GFF2546 0.56 -0.1
610,161 + GFF2546 0.56 +0.2
610,161 + GFF2546 0.56 -1.0
610,161 + GFF2546 0.56 -0.3
610,161 + GFF2546 0.56 -0.1
610,161 + GFF2546 0.56 -1.6
610,161 + GFF2546 0.56 +0.5
610,161 + GFF2546 0.56 -0.8
610,161 + GFF2546 0.56 +0.0
610,161 + GFF2546 0.56 +0.9
610,161 + GFF2546 0.56 -2.0
610,161 + GFF2546 0.56 -0.7
610,162 - GFF2546 0.56 -1.3
610,162 - GFF2546 0.56 +0.3
610,162 - GFF2546 0.56 +0.2
610,162 - GFF2546 0.56 -1.0
610,162 - GFF2546 0.56 +0.7
610,162 - GFF2546 0.56 -1.3
610,162 - GFF2546 0.56 +0.0
610,162 - GFF2546 0.56 +0.1
610,162 - GFF2546 0.56 -1.0
610,162 - GFF2546 0.56 +0.9
610,162 - GFF2546 0.56 -1.0
610,162 - GFF2546 0.56 +0.5
610,162 - GFF2546 0.56 -0.1
610,162 - GFF2546 0.56 -0.4
610,162 - GFF2546 0.56 -1.6
610,162 - GFF2546 0.56 -0.3
610,162 - GFF2546 0.56 -1.3
610,162 - GFF2546 0.56 -0.7
610,162 - GFF2546 0.56 +1.5
610,162 - GFF2546 0.56 +1.3
610,162 - GFF2546 0.56 -0.1
610,485 + GFF2546 0.78 +0.4
610,485 + GFF2546 0.78 +0.3
610,485 + GFF2546 0.78 -1.5
610,485 + GFF2546 0.78 +0.6
610,485 + GFF2546 0.78 +0.5
610,485 + GFF2546 0.78 -1.3
610,486 - GFF2546 0.78 -0.7
610,486 - GFF2546 0.78 -0.1
610,486 - GFF2546 0.78 +0.4
610,486 - GFF2546 0.78 -1.8
610,486 - GFF2546 0.78 +1.3
610,486 - GFF2546 0.78 -1.1
610,515 + GFF2546 0.80 -0.4
610,515 + GFF2546 0.80 +0.4
610,515 + GFF2546 0.80 -0.3
610,515 + GFF2546 0.80 +0.7
610,515 + GFF2546 0.80 -0.6
610,515 + GFF2546 0.80 +0.8
610,515 + GFF2546 0.80 +0.2
610,515 + GFF2546 0.80 -0.6
610,515 + GFF2546 0.80 -0.4
610,515 + GFF2546 0.80 +0.6
610,515 + GFF2546 0.80 +0.4
610,515 + GFF2546 0.80 -2.2
610,516 - GFF2546 0.80 +2.3
610,516 - GFF2546 0.80 +0.3
610,516 - GFF2546 0.80 +0.4
610,516 - GFF2546 0.80 +0.8
610,516 - GFF2546 0.80 +0.2
610,536 + GFF2546 0.81 -0.1
610,536 + GFF2546 0.81 -0.2
610,537 - GFF2546 0.81 -0.2
610,537 - GFF2546 0.81 -1.2
610,584 + GFF2546 0.85 +0.5
610,584 + GFF2546 0.85 -1.8
610,584 + GFF2546 0.85 +0.5
610,585 - GFF2546 0.85 -0.6
610,585 - GFF2546 0.85 -0.7
610,585 - GFF2546 0.85 +0.1
610,585 - GFF2546 0.85 +0.5
610,855 - -0.1
610,855 - -0.2
610,856 + +0.4
610,920 + -0.0
610,920 + -0.3
610,920 + +0.7
610,920 + +0.6
610,926 + -0.1
610,926 + +1.9
610,926 + -0.2
611,070 + GFF2547 0.46 -0.7
611,070 + GFF2547 0.46 +2.6
611,070 + GFF2547 0.46 -1.0
611,070 + GFF2547 0.46 -1.1
611,406 + GFF2548 0.22 -1.1
611,553 + GFF2548 0.45 -0.1
611,553 + GFF2548 0.45 -0.3
611,553 + GFF2548 0.45 +1.4
611,553 + GFF2548 0.45 -0.2
611,553 + GFF2548 0.45 +0.4
611,553 + GFF2548 0.45 +1.4
611,727 + GFF2548 0.73 -0.3
611,727 + GFF2548 0.73 -0.1
611,760 + GFF2548 0.78 +0.3
611,760 + GFF2548 0.78 +0.3

Or see this region's nucleotide sequence