Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2406 and GFF2407 are separated by 8 nucleotides GFF2407 and GFF2408 are separated by 12 nucleotides GFF2408 and GFF2409 are separated by 23 nucleotides
GFF2406 - DipZ protein, at 458,306 to 460,159
GFF2406
GFF2407 - hypothetical protein, at 460,168 to 460,629
GFF2407
GFF2408 - FIG00976241: hypothetical protein, at 460,642 to 461,388
GFF2408
GFF2409 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 461,412 to 462,752
GFF2409
Position (kb) 460
461
462 Strain fitness (log2 ratio) -2
-1
0
1
2 at 459.729 kb on - strand, within GFF2406 at 459.797 kb on + strand, within GFF2406 at 459.797 kb on + strand, within GFF2406 at 459.798 kb on - strand, within GFF2406 at 459.798 kb on - strand, within GFF2406 at 460.182 kb on - strand at 460.333 kb on + strand, within GFF2407 at 460.333 kb on + strand, within GFF2407 at 460.333 kb on + strand, within GFF2407 at 460.333 kb on + strand, within GFF2407 at 460.333 kb on + strand, within GFF2407 at 460.333 kb on + strand, within GFF2407 at 460.333 kb on + strand, within GFF2407 at 460.333 kb on + strand, within GFF2407 at 460.333 kb on + strand, within GFF2407 at 460.334 kb on - strand, within GFF2407 at 460.334 kb on - strand, within GFF2407 at 460.334 kb on - strand, within GFF2407 at 460.334 kb on - strand, within GFF2407 at 460.334 kb on - strand, within GFF2407 at 460.468 kb on + strand, within GFF2407 at 460.468 kb on + strand, within GFF2407 at 460.469 kb on - strand, within GFF2407 at 460.505 kb on - strand, within GFF2407 at 461.042 kb on + strand, within GFF2408 at 461.043 kb on - strand, within GFF2408 at 461.043 kb on - strand, within GFF2408 at 461.245 kb on - strand, within GFF2408 at 461.336 kb on + strand at 461.337 kb on - strand at 461.400 kb on + strand at 461.401 kb on - strand at 461.401 kb on - strand at 461.401 kb on - strand at 461.401 kb on - strand at 461.617 kb on + strand, within GFF2409 at 461.618 kb on - strand, within GFF2409 at 461.882 kb on + strand, within GFF2409 at 461.882 kb on + strand, within GFF2409 at 461.882 kb on + strand, within GFF2409 at 461.883 kb on - strand, within GFF2409 at 461.883 kb on - strand, within GFF2409 at 461.883 kb on - strand, within GFF2409 at 461.883 kb on - strand, within GFF2409 at 461.883 kb on - strand, within GFF2409 at 461.883 kb on - strand, within GFF2409 at 461.884 kb on + strand, within GFF2409 at 461.884 kb on + strand, within GFF2409 at 461.885 kb on - strand, within GFF2409 at 461.885 kb on - strand, within GFF2409 at 461.885 kb on - strand, within GFF2409 at 461.885 kb on - strand, within GFF2409 at 461.885 kb on - strand, within GFF2409 at 461.930 kb on + strand, within GFF2409 at 461.930 kb on + strand, within GFF2409 at 462.382 kb on + strand, within GFF2409 at 462.383 kb on - strand, within GFF2409 at 462.383 kb on - strand, within GFF2409
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 459,729 - GFF2406 0.77 +0.4 459,797 + GFF2406 0.80 +0.1 459,797 + GFF2406 0.80 -1.3 459,798 - GFF2406 0.80 +0.0 459,798 - GFF2406 0.80 -1.6 460,182 - -0.1 460,333 + GFF2407 0.36 -0.5 460,333 + GFF2407 0.36 -0.4 460,333 + GFF2407 0.36 -0.0 460,333 + GFF2407 0.36 -0.3 460,333 + GFF2407 0.36 +1.3 460,333 + GFF2407 0.36 +0.9 460,333 + GFF2407 0.36 +0.4 460,333 + GFF2407 0.36 -0.2 460,333 + GFF2407 0.36 -0.2 460,334 - GFF2407 0.36 +1.5 460,334 - GFF2407 0.36 -1.3 460,334 - GFF2407 0.36 +0.3 460,334 - GFF2407 0.36 +1.2 460,334 - GFF2407 0.36 +0.3 460,468 + GFF2407 0.65 -2.1 460,468 + GFF2407 0.65 -0.1 460,469 - GFF2407 0.65 -0.1 460,505 - GFF2407 0.73 -1.3 461,042 + GFF2408 0.54 -0.1 461,043 - GFF2408 0.54 +0.9 461,043 - GFF2408 0.54 +1.4 461,245 - GFF2408 0.81 -1.2 461,336 + +0.1 461,337 - -0.3 461,400 + +0.2 461,401 - -1.1 461,401 - +1.0 461,401 - +0.3 461,401 - -0.0 461,617 + GFF2409 0.15 -0.3 461,618 - GFF2409 0.15 +0.2 461,882 + GFF2409 0.35 -0.1 461,882 + GFF2409 0.35 -0.8 461,882 + GFF2409 0.35 +0.6 461,883 - GFF2409 0.35 -1.7 461,883 - GFF2409 0.35 +1.9 461,883 - GFF2409 0.35 -0.7 461,883 - GFF2409 0.35 -0.1 461,883 - GFF2409 0.35 +0.1 461,883 - GFF2409 0.35 -0.8 461,884 + GFF2409 0.35 -0.1 461,884 + GFF2409 0.35 -1.5 461,885 - GFF2409 0.35 -1.1 461,885 - GFF2409 0.35 -0.5 461,885 - GFF2409 0.35 +0.3 461,885 - GFF2409 0.35 -1.4 461,885 - GFF2409 0.35 -0.5 461,930 + GFF2409 0.39 +0.1 461,930 + GFF2409 0.39 -0.1 462,382 + GFF2409 0.72 -0.2 462,383 - GFF2409 0.72 -0.7 462,383 - GFF2409 0.72 +0.0
Or see this region's nucleotide sequence