Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2368 and GFF2369 are separated by 23 nucleotides GFF2369 and GFF2370 are separated by 3 nucleotides GFF2370 and GFF2371 are separated by 14 nucleotides
GFF2368 - ABC transporter, substrate-binding protein (cluster 7, di-/tri-carboxylate), at 422,349 to 423,314
GFF2368
GFF2369 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 423,338 to 424,213
GFF2369
GFF2370 - L-carnitine dehydratase/bile acid-inducible protein F, at 424,217 to 425,422
GFF2370
GFF2371 - BUG/TctC family periplasmic protein, at 425,437 to 426,432
GFF2371
Position (kb) 424
425
426 Strain fitness (log2 ratio) -2
-1
0
1
2 at 423.546 kb on + strand, within GFF2369 at 423.546 kb on + strand, within GFF2369 at 423.579 kb on + strand, within GFF2369 at 423.844 kb on - strand, within GFF2369 at 424.033 kb on + strand, within GFF2369 at 424.054 kb on - strand, within GFF2369 at 424.120 kb on - strand, within GFF2369 at 424.120 kb on - strand, within GFF2369 at 424.638 kb on + strand, within GFF2370 at 424.638 kb on + strand, within GFF2370 at 424.638 kb on + strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.783 kb on - strand, within GFF2370 at 424.783 kb on - strand, within GFF2370 at 424.783 kb on - strand, within GFF2370 at 424.812 kb on + strand, within GFF2370 at 424.854 kb on + strand, within GFF2370 at 424.876 kb on - strand, within GFF2370 at 424.987 kb on - strand, within GFF2370 at 424.987 kb on - strand, within GFF2370 at 425.005 kb on - strand, within GFF2370 at 425.005 kb on - strand, within GFF2370 at 425.005 kb on - strand, within GFF2370 at 425.005 kb on - strand, within GFF2370 at 425.220 kb on + strand, within GFF2370 at 425.220 kb on + strand, within GFF2370 at 425.221 kb on - strand, within GFF2370 at 425.298 kb on + strand, within GFF2370 at 425.855 kb on + strand, within GFF2371 at 425.855 kb on + strand, within GFF2371 at 425.855 kb on + strand, within GFF2371 at 425.855 kb on + strand, within GFF2371 at 425.856 kb on - strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.945 kb on + strand, within GFF2371 at 425.946 kb on - strand, within GFF2371 at 425.946 kb on - strand, within GFF2371 at 425.946 kb on - strand, within GFF2371 at 425.951 kb on + strand, within GFF2371 at 425.952 kb on - strand, within GFF2371 at 425.952 kb on - strand, within GFF2371 at 425.952 kb on - strand, within GFF2371 at 426.146 kb on + strand, within GFF2371 at 426.147 kb on - strand, within GFF2371 at 426.169 kb on + strand, within GFF2371
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 423,546 + GFF2369 0.24 -0.2 423,546 + GFF2369 0.24 -2.0 423,579 + GFF2369 0.28 +1.9 423,844 - GFF2369 0.58 +0.2 424,033 + GFF2369 0.79 +1.1 424,054 - GFF2369 0.82 -0.7 424,120 - GFF2369 0.89 -0.2 424,120 - GFF2369 0.89 -0.9 424,638 + GFF2370 0.35 +0.9 424,638 + GFF2370 0.35 -0.9 424,638 + GFF2370 0.35 -0.6 424,639 - GFF2370 0.35 -1.0 424,639 - GFF2370 0.35 -1.4 424,639 - GFF2370 0.35 -1.6 424,639 - GFF2370 0.35 -2.0 424,639 - GFF2370 0.35 -0.6 424,639 - GFF2370 0.35 +0.4 424,639 - GFF2370 0.35 -1.1 424,639 - GFF2370 0.35 -0.6 424,783 - GFF2370 0.47 -0.5 424,783 - GFF2370 0.47 -2.2 424,783 - GFF2370 0.47 +0.7 424,812 + GFF2370 0.49 +0.3 424,854 + GFF2370 0.53 -0.1 424,876 - GFF2370 0.55 -0.0 424,987 - GFF2370 0.64 -1.2 424,987 - GFF2370 0.64 -0.9 425,005 - GFF2370 0.65 -0.0 425,005 - GFF2370 0.65 -0.2 425,005 - GFF2370 0.65 +0.8 425,005 - GFF2370 0.65 -0.4 425,220 + GFF2370 0.83 +0.3 425,220 + GFF2370 0.83 -1.6 425,221 - GFF2370 0.83 -1.2 425,298 + GFF2370 0.90 -1.3 425,855 + GFF2371 0.42 -0.5 425,855 + GFF2371 0.42 -0.5 425,855 + GFF2371 0.42 +1.4 425,855 + GFF2371 0.42 +0.3 425,856 - GFF2371 0.42 +0.3 425,945 + GFF2371 0.51 -0.8 425,945 + GFF2371 0.51 +0.6 425,945 + GFF2371 0.51 -0.0 425,945 + GFF2371 0.51 -0.1 425,945 + GFF2371 0.51 -0.9 425,945 + GFF2371 0.51 -0.7 425,945 + GFF2371 0.51 +1.4 425,946 - GFF2371 0.51 -0.3 425,946 - GFF2371 0.51 +0.1 425,946 - GFF2371 0.51 +0.1 425,951 + GFF2371 0.52 +0.2 425,952 - GFF2371 0.52 +0.1 425,952 - GFF2371 0.52 +0.6 425,952 - GFF2371 0.52 -0.7 426,146 + GFF2371 0.71 -0.6 426,147 - GFF2371 0.71 -0.7 426,169 + GFF2371 0.73 -0.1
Or see this region's nucleotide sequence