Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2257 and GFF2258 are separated by 96 nucleotides GFF2258 and GFF2259 are separated by 26 nucleotides
GFF2257 - RNA 3'-terminal phosphate cyclase (EC 6.5.1.4), at 312,274 to 313,311
GFF2257
GFF2258 - 4-hydroxybenzoate transporter, at 313,408 to 314,766
GFF2258
GFF2259 - Alcohol dehydrogenase (EC 1.1.1.1), at 314,793 to 315,854
GFF2259
Position (kb) 313
314
315 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 312.526 kb on + strand, within GFF2257 at 312.526 kb on + strand, within GFF2257 at 312.997 kb on + strand, within GFF2257 at 312.997 kb on + strand, within GFF2257 at 313.382 kb on - strand at 313.487 kb on - strand at 313.844 kb on - strand, within GFF2258 at 314.257 kb on + strand, within GFF2258 at 314.257 kb on + strand, within GFF2258 at 314.257 kb on + strand, within GFF2258 at 314.257 kb on + strand, within GFF2258 at 314.257 kb on + strand, within GFF2258 at 314.257 kb on + strand, within GFF2258 at 314.258 kb on - strand, within GFF2258 at 314.258 kb on - strand, within GFF2258 at 314.423 kb on - strand, within GFF2258 at 314.423 kb on - strand, within GFF2258 at 314.557 kb on + strand, within GFF2258 at 314.814 kb on + strand at 315.153 kb on + strand, within GFF2259 at 315.153 kb on + strand, within GFF2259 at 315.180 kb on + strand, within GFF2259 at 315.180 kb on + strand, within GFF2259 at 315.249 kb on + strand, within GFF2259 at 315.249 kb on + strand, within GFF2259 at 315.249 kb on + strand, within GFF2259 at 315.250 kb on - strand, within GFF2259 at 315.250 kb on - strand, within GFF2259 at 315.336 kb on + strand, within GFF2259 at 315.336 kb on + strand, within GFF2259 at 315.336 kb on + strand, within GFF2259 at 315.459 kb on + strand, within GFF2259 at 315.460 kb on - strand, within GFF2259 at 315.460 kb on - strand, within GFF2259 at 315.460 kb on - strand, within GFF2259 at 315.597 kb on + strand, within GFF2259 at 315.597 kb on + strand, within GFF2259 at 315.597 kb on + strand, within GFF2259 at 315.675 kb on + strand, within GFF2259 at 315.675 kb on + strand, within GFF2259 at 315.675 kb on + strand, within GFF2259 at 315.676 kb on - strand, within GFF2259
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 312,526 + GFF2257 0.24 +3.4 312,526 + GFF2257 0.24 -0.3 312,997 + GFF2257 0.70 +0.2 312,997 + GFF2257 0.70 -0.2 313,382 - -0.3 313,487 - -0.2 313,844 - GFF2258 0.32 +0.0 314,257 + GFF2258 0.62 -0.2 314,257 + GFF2258 0.62 -0.6 314,257 + GFF2258 0.62 +0.4 314,257 + GFF2258 0.62 +0.4 314,257 + GFF2258 0.62 -0.7 314,257 + GFF2258 0.62 +0.8 314,258 - GFF2258 0.63 -0.8 314,258 - GFF2258 0.63 -0.9 314,423 - GFF2258 0.75 -0.1 314,423 - GFF2258 0.75 +0.3 314,557 + GFF2258 0.85 +0.0 314,814 + -0.1 315,153 + GFF2259 0.34 +0.6 315,153 + GFF2259 0.34 -0.3 315,180 + GFF2259 0.36 -1.9 315,180 + GFF2259 0.36 -0.3 315,249 + GFF2259 0.43 +0.1 315,249 + GFF2259 0.43 +0.8 315,249 + GFF2259 0.43 +0.1 315,250 - GFF2259 0.43 +0.9 315,250 - GFF2259 0.43 +0.2 315,336 + GFF2259 0.51 +2.1 315,336 + GFF2259 0.51 +0.2 315,336 + GFF2259 0.51 -0.1 315,459 + GFF2259 0.63 +2.9 315,460 - GFF2259 0.63 +1.9 315,460 - GFF2259 0.63 -1.6 315,460 - GFF2259 0.63 +0.6 315,597 + GFF2259 0.76 +0.4 315,597 + GFF2259 0.76 -0.3 315,597 + GFF2259 0.76 -0.2 315,675 + GFF2259 0.83 -0.9 315,675 + GFF2259 0.83 -0.4 315,675 + GFF2259 0.83 -0.8 315,676 - GFF2259 0.83 -2.6
Or see this region's nucleotide sequence