Strain Fitness in Variovorax sp. SCN45 around GFF2088

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2087 and GFF2088 overlap by 4 nucleotidesGFF2088 and GFF2089 are separated by 27 nucleotidesGFF2089 and GFF2090 are separated by 85 nucleotides GFF2087 - Ser/Thr and Tyr protein phosphatase (dual specificity), at 134,074 to 135,423 GFF2087 GFF2088 - Putative lipase in cluster with Phosphatidate cytidylyltransferase, at 135,420 to 137,186 GFF2088 GFF2089 - CDP-alcohol phosphatidyltransferase family protein, at 137,214 to 137,837 GFF2089 GFF2090 - Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12), at 137,923 to 138,987 GFF2090 Position (kb) 135 136 137 138Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 134.642 kb on + strand, within GFF2087at 134.642 kb on + strand, within GFF2087at 134.642 kb on + strand, within GFF2087at 134.642 kb on + strand, within GFF2087at 134.643 kb on - strand, within GFF2087at 134.747 kb on + strand, within GFF2087at 134.748 kb on - strand, within GFF2087at 134.785 kb on - strand, within GFF2087at 135.006 kb on + strand, within GFF2087at 135.006 kb on + strand, within GFF2087at 135.007 kb on - strand, within GFF2087at 135.218 kb on + strand, within GFF2087at 135.218 kb on + strand, within GFF2087at 135.219 kb on - strand, within GFF2087at 135.240 kb on - strand, within GFF2087at 135.268 kb on + strand, within GFF2087at 135.269 kb on - strand, within GFF2087at 135.341 kb on + strandat 135.341 kb on + strandat 135.341 kb on + strandat 135.350 kb on + strandat 135.350 kb on + strandat 135.350 kb on + strandat 135.350 kb on + strandat 135.351 kb on - strandat 135.351 kb on - strandat 135.351 kb on - strandat 135.351 kb on - strandat 135.351 kb on - strandat 135.625 kb on + strand, within GFF2088at 135.626 kb on - strand, within GFF2088at 135.710 kb on - strand, within GFF2088at 135.920 kb on - strand, within GFF2088at 135.920 kb on - strand, within GFF2088at 135.999 kb on + strand, within GFF2088at 135.999 kb on + strand, within GFF2088at 135.999 kb on + strand, within GFF2088at 136.000 kb on - strand, within GFF2088at 136.057 kb on + strand, within GFF2088at 136.058 kb on - strand, within GFF2088at 136.111 kb on + strand, within GFF2088at 136.117 kb on + strand, within GFF2088at 136.117 kb on + strand, within GFF2088at 136.117 kb on + strand, within GFF2088at 136.219 kb on + strand, within GFF2088at 136.624 kb on + strand, within GFF2088at 136.624 kb on + strand, within GFF2088at 136.625 kb on - strand, within GFF2088at 136.625 kb on - strand, within GFF2088at 136.672 kb on + strand, within GFF2088at 136.673 kb on - strand, within GFF2088at 136.673 kb on - strand, within GFF2088at 136.741 kb on + strand, within GFF2088at 136.742 kb on - strand, within GFF2088at 136.742 kb on - strand, within GFF2088at 136.742 kb on - strand, within GFF2088at 136.798 kb on + strand, within GFF2088at 136.798 kb on + strand, within GFF2088at 137.116 kb on + strandat 137.116 kb on + strandat 137.117 kb on - strandat 137.210 kb on + strandat 137.211 kb on - strandat 137.211 kb on - strandat 137.211 kb on - strandat 137.276 kb on + strandat 137.353 kb on + strand, within GFF2089at 137.353 kb on + strand, within GFF2089at 137.353 kb on + strand, within GFF2089at 137.354 kb on - strand, within GFF2089at 137.354 kb on - strand, within GFF2089at 137.354 kb on - strand, within GFF2089at 137.354 kb on - strand, within GFF2089at 137.531 kb on - strand, within GFF2089at 137.531 kb on - strand, within GFF2089at 137.827 kb on + strandat 137.861 kb on - strandat 137.861 kb on - strandat 137.892 kb on + strandat 137.892 kb on + strandat 137.893 kb on - strandat 137.895 kb on + strandat 137.895 kb on + strandat 137.895 kb on + strandat 137.903 kb on + strandat 137.928 kb on + strandat 138.040 kb on + strand, within GFF2090at 138.041 kb on - strand, within GFF2090

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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134,642 + GFF2087 0.42 +0.1
134,642 + GFF2087 0.42 -0.4
134,642 + GFF2087 0.42 -2.8
134,642 + GFF2087 0.42 -0.6
134,643 - GFF2087 0.42 -0.3
134,747 + GFF2087 0.50 -0.4
134,748 - GFF2087 0.50 +0.0
134,785 - GFF2087 0.53 +0.1
135,006 + GFF2087 0.69 -0.2
135,006 + GFF2087 0.69 +0.0
135,007 - GFF2087 0.69 -0.1
135,218 + GFF2087 0.85 +0.8
135,218 + GFF2087 0.85 -1.5
135,219 - GFF2087 0.85 +0.2
135,240 - GFF2087 0.86 -0.2
135,268 + GFF2087 0.88 +0.3
135,269 - GFF2087 0.89 -0.0
135,341 + +0.2
135,341 + +1.6
135,341 + -1.5
135,350 + -1.0
135,350 + -0.6
135,350 + +2.8
135,350 + +0.0
135,351 - +0.2
135,351 - +0.1
135,351 - +0.0
135,351 - +1.1
135,351 - -0.8
135,625 + GFF2088 0.12 -1.3
135,626 - GFF2088 0.12 -0.2
135,710 - GFF2088 0.16 -0.7
135,920 - GFF2088 0.28 +0.0
135,920 - GFF2088 0.28 +0.4
135,999 + GFF2088 0.33 -0.5
135,999 + GFF2088 0.33 +0.5
135,999 + GFF2088 0.33 -0.6
136,000 - GFF2088 0.33 +0.7
136,057 + GFF2088 0.36 +1.0
136,058 - GFF2088 0.36 -0.6
136,111 + GFF2088 0.39 +1.2
136,117 + GFF2088 0.39 -2.7
136,117 + GFF2088 0.39 -0.8
136,117 + GFF2088 0.39 -1.0
136,219 + GFF2088 0.45 -0.3
136,624 + GFF2088 0.68 -1.1
136,624 + GFF2088 0.68 +0.4
136,625 - GFF2088 0.68 -1.7
136,625 - GFF2088 0.68 -0.0
136,672 + GFF2088 0.71 -1.0
136,673 - GFF2088 0.71 +0.7
136,673 - GFF2088 0.71 +1.0
136,741 + GFF2088 0.75 -0.6
136,742 - GFF2088 0.75 -0.7
136,742 - GFF2088 0.75 -0.7
136,742 - GFF2088 0.75 -2.3
136,798 + GFF2088 0.78 -1.0
136,798 + GFF2088 0.78 -0.0
137,116 + +0.0
137,116 + -0.2
137,117 - +0.5
137,210 + -0.4
137,211 - +1.3
137,211 - +0.7
137,211 - +0.6
137,276 + -0.0
137,353 + GFF2089 0.22 -2.2
137,353 + GFF2089 0.22 -0.3
137,353 + GFF2089 0.22 -0.6
137,354 - GFF2089 0.22 +0.1
137,354 - GFF2089 0.22 -1.3
137,354 - GFF2089 0.22 -0.0
137,354 - GFF2089 0.22 -0.4
137,531 - GFF2089 0.51 -0.1
137,531 - GFF2089 0.51 -0.3
137,827 + +0.8
137,861 - -0.5
137,861 - +1.3
137,892 + +0.1
137,892 + -0.1
137,893 - +0.0
137,895 + -0.6
137,895 + -1.3
137,895 + -0.0
137,903 + -0.7
137,928 + -0.4
138,040 + GFF2090 0.11 +0.2
138,041 - GFF2090 0.11 +0.3

Or see this region's nucleotide sequence