Strain Fitness in Variovorax sp. SCN45 around GFF181

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF179 and GFF180 are separated by 5 nucleotidesGFF180 and GFF181 are separated by 14 nucleotidesGFF181 and GFF182 are separated by 22 nucleotides GFF179 - D-mannonate oxidoreductase (EC 1.1.1.57), at 209,652 to 211,154 GFF179 GFF180 - no description, at 211,160 to 211,489 GFF180 GFF181 - Protein of unknown function (DUF1501), at 211,504 to 212,961 GFF181 GFF182 - FIG00347566: hypothetical protein, at 212,984 to 214,801 GFF182 Position (kb) 211 212 213Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 210.582 kb on + strand, within GFF179at 210.583 kb on - strand, within GFF179at 210.897 kb on + strand, within GFF179at 210.897 kb on + strand, within GFF179at 210.898 kb on - strand, within GFF179at 210.898 kb on - strand, within GFF179at 210.898 kb on - strand, within GFF179at 210.898 kb on - strand, within GFF179at 211.185 kb on + strandat 211.185 kb on + strandat 211.185 kb on + strandat 211.185 kb on + strandat 211.185 kb on + strandat 211.185 kb on + strandat 211.185 kb on + strandat 211.185 kb on + strandat 211.185 kb on + strandat 211.185 kb on + strandat 211.185 kb on + strandat 211.186 kb on - strandat 211.186 kb on - strandat 211.302 kb on + strand, within GFF180at 211.302 kb on + strand, within GFF180at 211.637 kb on + strandat 211.638 kb on - strandat 211.740 kb on - strand, within GFF181at 211.889 kb on + strand, within GFF181at 211.889 kb on + strand, within GFF181at 211.889 kb on + strand, within GFF181at 211.889 kb on + strand, within GFF181at 211.889 kb on + strand, within GFF181at 211.889 kb on + strand, within GFF181at 211.889 kb on + strand, within GFF181at 211.890 kb on - strand, within GFF181at 211.890 kb on - strand, within GFF181at 211.890 kb on - strand, within GFF181at 212.066 kb on + strand, within GFF181at 212.066 kb on + strand, within GFF181at 212.066 kb on + strand, within GFF181at 212.066 kb on + strand, within GFF181at 212.066 kb on + strand, within GFF181at 212.067 kb on - strand, within GFF181at 212.067 kb on - strand, within GFF181at 212.067 kb on - strand, within GFF181at 212.067 kb on - strand, within GFF181at 212.067 kb on - strand, within GFF181at 212.067 kb on - strand, within GFF181at 212.067 kb on - strand, within GFF181at 212.067 kb on - strand, within GFF181at 212.067 kb on - strand, within GFF181at 212.067 kb on - strand, within GFF181at 212.165 kb on + strand, within GFF181at 212.165 kb on + strand, within GFF181at 212.166 kb on - strand, within GFF181at 212.181 kb on + strand, within GFF181at 212.181 kb on + strand, within GFF181at 212.182 kb on - strand, within GFF181at 212.240 kb on + strand, within GFF181at 212.303 kb on + strand, within GFF181at 212.303 kb on + strand, within GFF181at 212.303 kb on + strand, within GFF181at 212.304 kb on - strand, within GFF181at 212.304 kb on - strand, within GFF181at 212.633 kb on + strand, within GFF181at 212.633 kb on + strand, within GFF181at 212.633 kb on + strand, within GFF181at 212.634 kb on - strand, within GFF181at 212.698 kb on + strand, within GFF181at 212.726 kb on + strand, within GFF181at 212.726 kb on + strand, within GFF181at 212.726 kb on + strand, within GFF181at 212.726 kb on + strand, within GFF181at 212.727 kb on - strand, within GFF181at 212.727 kb on - strand, within GFF181at 212.727 kb on - strand, within GFF181at 212.727 kb on - strand, within GFF181at 212.727 kb on - strand, within GFF181at 212.727 kb on - strand, within GFF181at 212.727 kb on - strand, within GFF181at 212.735 kb on + strand, within GFF181at 212.736 kb on - strand, within GFF181at 212.771 kb on + strand, within GFF181at 212.771 kb on + strand, within GFF181at 212.771 kb on + strand, within GFF181at 212.772 kb on - strand, within GFF181at 212.772 kb on - strand, within GFF181at 212.772 kb on - strand, within GFF181at 212.813 kb on + strand, within GFF181at 212.813 kb on + strand, within GFF181at 212.813 kb on + strand, within GFF181at 212.813 kb on + strand, within GFF181at 212.813 kb on + strand, within GFF181at 212.813 kb on + strand, within GFF181at 212.814 kb on - strand, within GFF181at 212.814 kb on - strand, within GFF181at 212.814 kb on - strand, within GFF181at 212.814 kb on - strand, within GFF181at 212.957 kb on + strandat 212.957 kb on + strandat 212.957 kb on + strandat 212.957 kb on + strandat 212.957 kb on + strandat 212.957 kb on + strandat 212.957 kb on + strandat 212.957 kb on + strandat 212.957 kb on + strandat 212.957 kb on + strandat 212.957 kb on + strandat 212.958 kb on - strandat 212.958 kb on - strandat 212.958 kb on - strandat 212.958 kb on - strandat 212.958 kb on - strandat 212.958 kb on - strandat 212.958 kb on - strandat 212.958 kb on - strandat 212.958 kb on - strandat 212.958 kb on - strandat 212.958 kb on - strandat 212.958 kb on - strandat 212.958 kb on - strandat 212.961 kb on + strandat 212.961 kb on + strandat 212.961 kb on + strandat 212.961 kb on + strandat 212.961 kb on + strandat 212.962 kb on - strandat 212.962 kb on - strandat 212.962 kb on - strandat 212.962 kb on - strandat 212.985 kb on + strandat 212.986 kb on - strandat 213.000 kb on + strandat 213.001 kb on - strandat 213.001 kb on - strandat 213.208 kb on - strand, within GFF182at 213.208 kb on - strand, within GFF182at 213.271 kb on - strand, within GFF182at 213.354 kb on + strand, within GFF182at 213.354 kb on + strand, within GFF182at 213.354 kb on + strand, within GFF182at 213.355 kb on - strand, within GFF182at 213.355 kb on - strand, within GFF182at 213.355 kb on - strand, within GFF182at 213.651 kb on + strand, within GFF182at 213.651 kb on + strand, within GFF182at 213.651 kb on + strand, within GFF182at 213.652 kb on - strand, within GFF182at 213.652 kb on - strand, within GFF182at 213.652 kb on - strand, within GFF182at 213.652 kb on - strand, within GFF182at 213.876 kb on + strand, within GFF182at 213.876 kb on + strand, within GFF182at 213.877 kb on - strand, within GFF182at 213.877 kb on - strand, within GFF182at 213.877 kb on - strand, within GFF182at 213.877 kb on - strand, within GFF182at 213.877 kb on - strand, within GFF182at 213.896 kb on - strand, within GFF182at 213.933 kb on + strand, within GFF182at 213.934 kb on - strand, within GFF182

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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210,582 + GFF179 0.62 +0.2
210,583 - GFF179 0.62 -0.8
210,897 + GFF179 0.83 -0.9
210,897 + GFF179 0.83 -1.8
210,898 - GFF179 0.83 -0.4
210,898 - GFF179 0.83 +0.4
210,898 - GFF179 0.83 -0.5
210,898 - GFF179 0.83 -0.6
211,185 + +0.0
211,185 + +0.3
211,185 + +1.7
211,185 + -1.8
211,185 + -1.0
211,185 + -0.2
211,185 + -0.9
211,185 + -0.3
211,185 + +0.8
211,185 + -0.4
211,185 + +0.4
211,186 - +0.3
211,186 - -0.0
211,302 + GFF180 0.43 -0.2
211,302 + GFF180 0.43 -1.0
211,637 + -0.0
211,638 - +0.1
211,740 - GFF181 0.16 -0.8
211,889 + GFF181 0.26 -0.6
211,889 + GFF181 0.26 -0.3
211,889 + GFF181 0.26 -0.9
211,889 + GFF181 0.26 +0.3
211,889 + GFF181 0.26 +0.3
211,889 + GFF181 0.26 -1.9
211,889 + GFF181 0.26 +1.4
211,890 - GFF181 0.26 +1.1
211,890 - GFF181 0.26 -1.3
211,890 - GFF181 0.26 -0.9
212,066 + GFF181 0.39 -0.5
212,066 + GFF181 0.39 +0.1
212,066 + GFF181 0.39 -1.5
212,066 + GFF181 0.39 +0.0
212,066 + GFF181 0.39 -0.8
212,067 - GFF181 0.39 -0.8
212,067 - GFF181 0.39 +0.2
212,067 - GFF181 0.39 +1.4
212,067 - GFF181 0.39 +0.4
212,067 - GFF181 0.39 +0.8
212,067 - GFF181 0.39 +0.6
212,067 - GFF181 0.39 -1.0
212,067 - GFF181 0.39 +2.0
212,067 - GFF181 0.39 +0.5
212,067 - GFF181 0.39 -0.2
212,165 + GFF181 0.45 -0.5
212,165 + GFF181 0.45 -0.2
212,166 - GFF181 0.45 -0.5
212,181 + GFF181 0.46 -0.2
212,181 + GFF181 0.46 +0.6
212,182 - GFF181 0.47 -1.9
212,240 + GFF181 0.50 -0.8
212,303 + GFF181 0.55 -0.8
212,303 + GFF181 0.55 +0.4
212,303 + GFF181 0.55 -0.9
212,304 - GFF181 0.55 -1.0
212,304 - GFF181 0.55 -0.6
212,633 + GFF181 0.77 -0.7
212,633 + GFF181 0.77 -0.1
212,633 + GFF181 0.77 -0.1
212,634 - GFF181 0.78 +0.1
212,698 + GFF181 0.82 -0.5
212,726 + GFF181 0.84 -0.0
212,726 + GFF181 0.84 +0.4
212,726 + GFF181 0.84 -0.2
212,726 + GFF181 0.84 -0.0
212,727 - GFF181 0.84 -0.6
212,727 - GFF181 0.84 +0.8
212,727 - GFF181 0.84 +0.7
212,727 - GFF181 0.84 +0.2
212,727 - GFF181 0.84 +1.4
212,727 - GFF181 0.84 +0.2
212,727 - GFF181 0.84 +0.2
212,735 + GFF181 0.84 +0.6
212,736 - GFF181 0.84 -1.0
212,771 + GFF181 0.87 +0.4
212,771 + GFF181 0.87 -0.6
212,771 + GFF181 0.87 +0.0
212,772 - GFF181 0.87 +0.8
212,772 - GFF181 0.87 -0.5
212,772 - GFF181 0.87 -2.0
212,813 + GFF181 0.90 +2.7
212,813 + GFF181 0.90 -0.5
212,813 + GFF181 0.90 -0.3
212,813 + GFF181 0.90 -0.3
212,813 + GFF181 0.90 +1.2
212,813 + GFF181 0.90 -1.4
212,814 - GFF181 0.90 +0.6
212,814 - GFF181 0.90 -1.1
212,814 - GFF181 0.90 +0.4
212,814 - GFF181 0.90 +0.4
212,957 + -1.5
212,957 + -0.5
212,957 + +1.0
212,957 + +0.1
212,957 + -0.1
212,957 + -1.3
212,957 + -0.3
212,957 + +0.3
212,957 + +1.0
212,957 + -0.1
212,957 + +0.9
212,958 - -0.4
212,958 - +1.2
212,958 - +1.9
212,958 - -0.2
212,958 - +0.4
212,958 - -1.2
212,958 - -3.3
212,958 - +1.8
212,958 - -0.4
212,958 - -1.8
212,958 - -0.0
212,958 - -0.2
212,958 - -2.5
212,961 + -0.1
212,961 + +0.2
212,961 + +0.7
212,961 + +0.6
212,961 + -0.1
212,962 - -0.6
212,962 - -0.4
212,962 - -0.2
212,962 - -2.2
212,985 + -0.7
212,986 - -0.1
213,000 + +0.6
213,001 - -1.0
213,001 - -0.3
213,208 - GFF182 0.12 -0.1
213,208 - GFF182 0.12 +2.7
213,271 - GFF182 0.16 -0.3
213,354 + GFF182 0.20 +0.1
213,354 + GFF182 0.20 -0.6
213,354 + GFF182 0.20 -0.6
213,355 - GFF182 0.20 +0.5
213,355 - GFF182 0.20 -0.9
213,355 - GFF182 0.20 +0.4
213,651 + GFF182 0.37 -0.9
213,651 + GFF182 0.37 +0.4
213,651 + GFF182 0.37 -0.7
213,652 - GFF182 0.37 -1.0
213,652 - GFF182 0.37 +0.3
213,652 - GFF182 0.37 -0.2
213,652 - GFF182 0.37 -1.4
213,876 + GFF182 0.49 -0.2
213,876 + GFF182 0.49 +0.2
213,877 - GFF182 0.49 +0.1
213,877 - GFF182 0.49 +0.1
213,877 - GFF182 0.49 -0.1
213,877 - GFF182 0.49 +0.9
213,877 - GFF182 0.49 -0.4
213,896 - GFF182 0.50 -0.3
213,933 + GFF182 0.52 -0.2
213,934 - GFF182 0.52 +1.0

Or see this region's nucleotide sequence