Strain Fitness in Variovorax sp. SCN45 around GFF1389

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1387 and GFF1388 overlap by 4 nucleotidesGFF1388 and GFF1389 overlap by 4 nucleotidesGFF1389 and GFF1390 overlap by 4 nucleotidesGFF1390 and GFF1391 are separated by 137 nucleotides GFF1387 - Paraquat-inducible protein A, at 734,137 to 734,763 GFF1387 GFF1388 - Paraquat-inducible protein A, at 734,760 to 735,506 GFF1388 GFF1389 - Paraquat-inducible protein B, at 735,503 to 737,149 GFF1389 GFF1390 - ortholog of Bordetella pertussis (BX470248) BP2750, at 737,146 to 737,775 GFF1390 GFF1391 - Uncharacterized MFS-type transporter, at 737,913 to 739,493 GFF1391 Position (kb) 735 736 737 738Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 735.003 kb on + strand, within GFF1388at 735.003 kb on + strand, within GFF1388at 735.003 kb on + strand, within GFF1388at 735.003 kb on + strand, within GFF1388at 735.003 kb on + strand, within GFF1388at 735.003 kb on + strand, within GFF1388at 735.003 kb on + strand, within GFF1388at 735.003 kb on + strand, within GFF1388at 735.003 kb on + strand, within GFF1388at 735.003 kb on + strand, within GFF1388at 735.003 kb on + strand, within GFF1388at 735.003 kb on + strand, within GFF1388at 735.003 kb on + strand, within GFF1388at 735.003 kb on + strand, within GFF1388at 735.003 kb on + strand, within GFF1388at 735.003 kb on + strand, within GFF1388at 735.003 kb on + strand, within GFF1388at 735.003 kb on + strand, within GFF1388at 735.003 kb on + strand, within GFF1388at 735.003 kb on + strand, within GFF1388at 735.003 kb on + strand, within GFF1388at 735.003 kb on + strand, within GFF1388at 735.004 kb on - strand, within GFF1388at 735.004 kb on - strand, within GFF1388at 735.004 kb on - strand, within GFF1388at 735.004 kb on - strand, within GFF1388at 735.004 kb on - strand, within GFF1388at 735.004 kb on - strand, within GFF1388at 735.004 kb on - strand, within GFF1388at 735.004 kb on - strand, within GFF1388at 735.004 kb on - strand, within GFF1388at 735.004 kb on - strand, within GFF1388at 735.004 kb on - strand, within GFF1388at 735.004 kb on - strand, within GFF1388at 735.004 kb on - strand, within GFF1388at 735.004 kb on - strand, within GFF1388at 735.004 kb on - strand, within GFF1388at 735.007 kb on + strand, within GFF1388at 735.008 kb on - strand, within GFF1388at 735.060 kb on + strand, within GFF1388at 735.061 kb on - strand, within GFF1388at 735.061 kb on - strand, within GFF1388at 735.061 kb on - strand, within GFF1388at 735.087 kb on + strand, within GFF1388at 735.088 kb on - strand, within GFF1388at 735.088 kb on - strand, within GFF1388at 735.088 kb on - strand, within GFF1388at 735.088 kb on - strand, within GFF1388at 735.109 kb on - strand, within GFF1388at 735.237 kb on + strand, within GFF1388at 735.238 kb on - strand, within GFF1388at 735.735 kb on - strand, within GFF1389at 735.735 kb on - strand, within GFF1389at 735.735 kb on - strand, within GFF1389at 735.735 kb on - strand, within GFF1389at 735.795 kb on + strand, within GFF1389at 735.795 kb on + strand, within GFF1389at 735.795 kb on + strand, within GFF1389at 735.796 kb on - strand, within GFF1389at 735.923 kb on + strand, within GFF1389at 735.923 kb on + strand, within GFF1389at 735.923 kb on + strand, within GFF1389at 735.923 kb on + strand, within GFF1389at 735.924 kb on - strand, within GFF1389at 735.924 kb on - strand, within GFF1389at 735.924 kb on - strand, within GFF1389at 736.073 kb on + strand, within GFF1389at 736.073 kb on + strand, within GFF1389at 736.074 kb on - strand, within GFF1389at 736.074 kb on - strand, within GFF1389at 736.166 kb on + strand, within GFF1389at 736.166 kb on + strand, within GFF1389at 736.166 kb on + strand, within GFF1389at 736.412 kb on + strand, within GFF1389at 736.412 kb on + strand, within GFF1389at 736.413 kb on - strand, within GFF1389at 736.413 kb on - strand, within GFF1389at 736.694 kb on + strand, within GFF1389at 736.694 kb on + strand, within GFF1389at 736.694 kb on + strand, within GFF1389at 736.694 kb on + strand, within GFF1389at 736.695 kb on - strand, within GFF1389at 736.695 kb on - strand, within GFF1389at 736.695 kb on - strand, within GFF1389at 737.093 kb on + strandat 737.093 kb on + strandat 737.094 kb on - strandat 737.094 kb on - strandat 737.227 kb on + strand, within GFF1390at 737.227 kb on + strand, within GFF1390at 737.227 kb on + strand, within GFF1390at 737.227 kb on + strand, within GFF1390at 737.227 kb on + strand, within GFF1390at 737.227 kb on + strand, within GFF1390at 737.228 kb on - strand, within GFF1390at 737.228 kb on - strand, within GFF1390at 737.228 kb on - strand, within GFF1390at 737.228 kb on - strand, within GFF1390at 737.230 kb on + strand, within GFF1390at 737.230 kb on + strand, within GFF1390at 737.230 kb on + strand, within GFF1390at 737.230 kb on + strand, within GFF1390at 737.231 kb on - strand, within GFF1390at 737.299 kb on + strand, within GFF1390at 737.299 kb on + strand, within GFF1390at 737.848 kb on - strandat 737.848 kb on - strandat 737.848 kb on - strandat 738.138 kb on + strand, within GFF1391at 738.138 kb on + strand, within GFF1391at 738.139 kb on - strand, within GFF1391at 738.139 kb on - strand, within GFF1391at 738.139 kb on - strand, within GFF1391

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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735,003 + GFF1388 0.33 +3.5
735,003 + GFF1388 0.33 -0.7
735,003 + GFF1388 0.33 -0.0
735,003 + GFF1388 0.33 +0.8
735,003 + GFF1388 0.33 -0.3
735,003 + GFF1388 0.33 +1.3
735,003 + GFF1388 0.33 +0.3
735,003 + GFF1388 0.33 -1.3
735,003 + GFF1388 0.33 +0.0
735,003 + GFF1388 0.33 +0.2
735,003 + GFF1388 0.33 -0.1
735,003 + GFF1388 0.33 +0.0
735,003 + GFF1388 0.33 -0.3
735,003 + GFF1388 0.33 -0.5
735,003 + GFF1388 0.33 -1.3
735,003 + GFF1388 0.33 +0.4
735,003 + GFF1388 0.33 -0.3
735,003 + GFF1388 0.33 -1.2
735,003 + GFF1388 0.33 +0.9
735,003 + GFF1388 0.33 +0.1
735,003 + GFF1388 0.33 +0.3
735,003 + GFF1388 0.33 +0.5
735,004 - GFF1388 0.33 -0.4
735,004 - GFF1388 0.33 +0.0
735,004 - GFF1388 0.33 -0.5
735,004 - GFF1388 0.33 +0.1
735,004 - GFF1388 0.33 -0.3
735,004 - GFF1388 0.33 -0.2
735,004 - GFF1388 0.33 -0.1
735,004 - GFF1388 0.33 -0.5
735,004 - GFF1388 0.33 -0.2
735,004 - GFF1388 0.33 -0.8
735,004 - GFF1388 0.33 -0.2
735,004 - GFF1388 0.33 +0.6
735,004 - GFF1388 0.33 -0.1
735,004 - GFF1388 0.33 +1.3
735,004 - GFF1388 0.33 +0.5
735,007 + GFF1388 0.33 -0.0
735,008 - GFF1388 0.33 +0.9
735,060 + GFF1388 0.40 +0.5
735,061 - GFF1388 0.40 +0.1
735,061 - GFF1388 0.40 -1.3
735,061 - GFF1388 0.40 +0.0
735,087 + GFF1388 0.44 +0.7
735,088 - GFF1388 0.44 -1.9
735,088 - GFF1388 0.44 -2.1
735,088 - GFF1388 0.44 -0.1
735,088 - GFF1388 0.44 -0.5
735,109 - GFF1388 0.47 -0.3
735,237 + GFF1388 0.64 +1.5
735,238 - GFF1388 0.64 -0.4
735,735 - GFF1389 0.14 +1.0
735,735 - GFF1389 0.14 -1.3
735,735 - GFF1389 0.14 +0.0
735,735 - GFF1389 0.14 -0.8
735,795 + GFF1389 0.18 +0.4
735,795 + GFF1389 0.18 +0.1
735,795 + GFF1389 0.18 +0.1
735,796 - GFF1389 0.18 -1.2
735,923 + GFF1389 0.26 -0.1
735,923 + GFF1389 0.26 +0.1
735,923 + GFF1389 0.26 -0.7
735,923 + GFF1389 0.26 -0.3
735,924 - GFF1389 0.26 +1.5
735,924 - GFF1389 0.26 +0.4
735,924 - GFF1389 0.26 -0.0
736,073 + GFF1389 0.35 +1.1
736,073 + GFF1389 0.35 -1.2
736,074 - GFF1389 0.35 +0.1
736,074 - GFF1389 0.35 +0.6
736,166 + GFF1389 0.40 -0.3
736,166 + GFF1389 0.40 -0.5
736,166 + GFF1389 0.40 +0.1
736,412 + GFF1389 0.55 -0.5
736,412 + GFF1389 0.55 -0.1
736,413 - GFF1389 0.55 -0.3
736,413 - GFF1389 0.55 -0.3
736,694 + GFF1389 0.72 +0.1
736,694 + GFF1389 0.72 +0.2
736,694 + GFF1389 0.72 +1.4
736,694 + GFF1389 0.72 +0.1
736,695 - GFF1389 0.72 -0.6
736,695 - GFF1389 0.72 -0.1
736,695 - GFF1389 0.72 +1.5
737,093 + -1.9
737,093 + -1.9
737,094 - -0.5
737,094 - -0.0
737,227 + GFF1390 0.13 -0.3
737,227 + GFF1390 0.13 -0.1
737,227 + GFF1390 0.13 +0.2
737,227 + GFF1390 0.13 -1.1
737,227 + GFF1390 0.13 -1.7
737,227 + GFF1390 0.13 -2.1
737,228 - GFF1390 0.13 +0.4
737,228 - GFF1390 0.13 +1.2
737,228 - GFF1390 0.13 -1.0
737,228 - GFF1390 0.13 +1.3
737,230 + GFF1390 0.13 +1.1
737,230 + GFF1390 0.13 -0.1
737,230 + GFF1390 0.13 +1.2
737,230 + GFF1390 0.13 +0.5
737,231 - GFF1390 0.13 -0.4
737,299 + GFF1390 0.24 +2.9
737,299 + GFF1390 0.24 -1.4
737,848 - +0.0
737,848 - -0.7
737,848 - +2.3
738,138 + GFF1391 0.14 +1.0
738,138 + GFF1391 0.14 -2.9
738,139 - GFF1391 0.14 -0.5
738,139 - GFF1391 0.14 +1.1
738,139 - GFF1391 0.14 +0.3

Or see this region's nucleotide sequence