Strain Fitness in Variovorax sp. SCN45 around GFF1353

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1352 and GFF1353 are separated by 110 nucleotidesGFF1353 and GFF1354 are separated by 14 nucleotidesGFF1354 and GFF1355 are separated by 138 nucleotides GFF1352 - Probable glutathione s-transferase protein (EC 2.5.1.18), at 695,374 to 696,312 GFF1352 GFF1353 - Short-chain dehydrogenase/reductase SDR, at 696,423 to 697,328 GFF1353 GFF1354 - FMN-dependent NADH-azoreductase (EC 1.7.1.6), at 697,343 to 698,014 GFF1354 GFF1355 - Transcriptional regulator, LysR family, at 698,153 to 699,058 GFF1355 Position (kb) 696 697 698Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 695.560 kb on + strand, within GFF1352at 695.560 kb on + strand, within GFF1352at 695.560 kb on + strand, within GFF1352at 695.560 kb on + strand, within GFF1352at 695.560 kb on + strand, within GFF1352at 695.560 kb on + strand, within GFF1352at 695.561 kb on - strand, within GFF1352at 695.561 kb on - strand, within GFF1352at 695.561 kb on - strand, within GFF1352at 695.561 kb on - strand, within GFF1352at 695.561 kb on - strand, within GFF1352at 695.561 kb on - strand, within GFF1352at 695.561 kb on - strand, within GFF1352at 695.561 kb on - strand, within GFF1352at 695.836 kb on + strand, within GFF1352at 695.837 kb on - strand, within GFF1352at 695.837 kb on - strand, within GFF1352at 695.846 kb on - strand, within GFF1352at 695.846 kb on - strand, within GFF1352at 695.846 kb on - strand, within GFF1352at 695.926 kb on + strand, within GFF1352at 695.927 kb on - strand, within GFF1352at 695.942 kb on - strand, within GFF1352at 696.223 kb on + strandat 696.224 kb on - strandat 696.287 kb on - strandat 696.367 kb on + strandat 696.375 kb on + strandat 696.376 kb on - strandat 696.376 kb on - strandat 696.840 kb on + strand, within GFF1353at 696.841 kb on - strand, within GFF1353at 696.906 kb on + strand, within GFF1353at 696.906 kb on + strand, within GFF1353at 696.906 kb on + strand, within GFF1353at 696.907 kb on - strand, within GFF1353at 696.907 kb on - strand, within GFF1353at 696.907 kb on - strand, within GFF1353at 696.907 kb on - strand, within GFF1353at 696.907 kb on - strand, within GFF1353at 696.951 kb on + strand, within GFF1353at 696.951 kb on + strand, within GFF1353at 696.952 kb on - strand, within GFF1353at 696.952 kb on - strand, within GFF1353at 697.005 kb on + strand, within GFF1353at 697.049 kb on + strand, within GFF1353at 697.049 kb on + strand, within GFF1353at 697.049 kb on + strand, within GFF1353at 697.188 kb on + strand, within GFF1353at 697.188 kb on + strand, within GFF1353at 697.189 kb on - strand, within GFF1353at 697.189 kb on - strand, within GFF1353at 697.189 kb on - strand, within GFF1353at 697.189 kb on - strand, within GFF1353at 697.571 kb on + strand, within GFF1354at 697.572 kb on - strand, within GFF1354at 697.572 kb on - strand, within GFF1354at 697.608 kb on + strand, within GFF1354at 697.608 kb on + strand, within GFF1354at 697.609 kb on - strand, within GFF1354at 697.609 kb on - strand, within GFF1354at 697.609 kb on - strand, within GFF1354at 697.609 kb on - strand, within GFF1354at 697.609 kb on - strand, within GFF1354at 697.609 kb on - strand, within GFF1354at 697.609 kb on - strand, within GFF1354at 697.704 kb on + strand, within GFF1354at 697.704 kb on + strand, within GFF1354at 697.704 kb on + strand, within GFF1354at 697.704 kb on + strand, within GFF1354at 697.704 kb on + strand, within GFF1354at 697.704 kb on + strand, within GFF1354at 697.705 kb on - strand, within GFF1354at 697.705 kb on - strand, within GFF1354at 697.705 kb on - strand, within GFF1354at 697.705 kb on - strand, within GFF1354at 697.705 kb on - strand, within GFF1354at 697.816 kb on - strand, within GFF1354at 697.816 kb on - strand, within GFF1354at 698.055 kb on + strandat 698.055 kb on + strandat 698.055 kb on + strandat 698.056 kb on - strandat 698.056 kb on - strandat 698.056 kb on - strandat 698.056 kb on - strandat 698.056 kb on - strandat 698.089 kb on + strandat 698.089 kb on + strandat 698.089 kb on + strandat 698.089 kb on + strandat 698.089 kb on + strandat 698.089 kb on + strandat 698.090 kb on - strandat 698.090 kb on - strandat 698.090 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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695,560 + GFF1352 0.20 -0.0
695,560 + GFF1352 0.20 -0.9
695,560 + GFF1352 0.20 +0.5
695,560 + GFF1352 0.20 -2.9
695,560 + GFF1352 0.20 -0.1
695,560 + GFF1352 0.20 -1.4
695,561 - GFF1352 0.20 -1.3
695,561 - GFF1352 0.20 +0.2
695,561 - GFF1352 0.20 -0.5
695,561 - GFF1352 0.20 -0.7
695,561 - GFF1352 0.20 -0.1
695,561 - GFF1352 0.20 -0.0
695,561 - GFF1352 0.20 -0.1
695,561 - GFF1352 0.20 -0.4
695,836 + GFF1352 0.49 +0.6
695,837 - GFF1352 0.49 -2.2
695,837 - GFF1352 0.49 -0.2
695,846 - GFF1352 0.50 -0.5
695,846 - GFF1352 0.50 +0.4
695,846 - GFF1352 0.50 -0.8
695,926 + GFF1352 0.59 -0.8
695,927 - GFF1352 0.59 -0.6
695,942 - GFF1352 0.60 -0.4
696,223 + +0.7
696,224 - -0.1
696,287 - -0.9
696,367 + -1.1
696,375 + +0.3
696,376 - -1.1
696,376 - -0.1
696,840 + GFF1353 0.46 -0.4
696,841 - GFF1353 0.46 -0.3
696,906 + GFF1353 0.53 +0.2
696,906 + GFF1353 0.53 +0.5
696,906 + GFF1353 0.53 +0.1
696,907 - GFF1353 0.53 +0.3
696,907 - GFF1353 0.53 +0.1
696,907 - GFF1353 0.53 +0.7
696,907 - GFF1353 0.53 +2.2
696,907 - GFF1353 0.53 +0.0
696,951 + GFF1353 0.58 +1.8
696,951 + GFF1353 0.58 +1.5
696,952 - GFF1353 0.58 +0.1
696,952 - GFF1353 0.58 -0.1
697,005 + GFF1353 0.64 -0.5
697,049 + GFF1353 0.69 -0.4
697,049 + GFF1353 0.69 +0.4
697,049 + GFF1353 0.69 +0.9
697,188 + GFF1353 0.84 +1.1
697,188 + GFF1353 0.84 +0.5
697,189 - GFF1353 0.85 -1.2
697,189 - GFF1353 0.85 -1.8
697,189 - GFF1353 0.85 +0.5
697,189 - GFF1353 0.85 -0.3
697,571 + GFF1354 0.34 -0.9
697,572 - GFF1354 0.34 +1.0
697,572 - GFF1354 0.34 +0.1
697,608 + GFF1354 0.39 -0.9
697,608 + GFF1354 0.39 -1.1
697,609 - GFF1354 0.40 -0.8
697,609 - GFF1354 0.40 -0.7
697,609 - GFF1354 0.40 +0.1
697,609 - GFF1354 0.40 +0.7
697,609 - GFF1354 0.40 +0.7
697,609 - GFF1354 0.40 +0.7
697,609 - GFF1354 0.40 +0.2
697,704 + GFF1354 0.54 -0.7
697,704 + GFF1354 0.54 -1.1
697,704 + GFF1354 0.54 -1.1
697,704 + GFF1354 0.54 +0.2
697,704 + GFF1354 0.54 -1.1
697,704 + GFF1354 0.54 +1.0
697,705 - GFF1354 0.54 -0.2
697,705 - GFF1354 0.54 +0.1
697,705 - GFF1354 0.54 +0.6
697,705 - GFF1354 0.54 +1.0
697,705 - GFF1354 0.54 +0.5
697,816 - GFF1354 0.70 -1.7
697,816 - GFF1354 0.70 -0.9
698,055 + +0.6
698,055 + +0.1
698,055 + -2.1
698,056 - +0.0
698,056 - -0.2
698,056 - +1.1
698,056 - +0.2
698,056 - -3.1
698,089 + -0.9
698,089 + -0.2
698,089 + +0.7
698,089 + -1.5
698,089 + -0.9
698,089 + -0.1
698,090 - -0.5
698,090 - +0.5
698,090 - -0.3

Or see this region's nucleotide sequence