Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06929

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06927 and MPMX19_06928 are separated by 42 nucleotidesMPMX19_06928 and MPMX19_06929 are separated by 308 nucleotidesMPMX19_06929 and MPMX19_06930 are separated by 316 nucleotidesMPMX19_06930 and MPMX19_06931 are separated by 14 nucleotides MPMX19_06927: MPMX19_06927 - FMN-dependent NADH-azoreductase 1, at 202,073 to 202,705 _06927 MPMX19_06928: MPMX19_06928 - hypothetical protein, at 202,748 to 203,020 _06928 MPMX19_06929: MPMX19_06929 - hypothetical protein, at 203,329 to 203,646 _06929 MPMX19_06930: MPMX19_06930 - Sensor kinase CckA, at 203,963 to 204,331 _06930 MPMX19_06931: MPMX19_06931 - hypothetical protein, at 204,346 to 204,669 _06931 Position (kb) 203 204Strain fitness (log2 ratio) -3 -2 -1 0 1at 202.344 kb on + strand, within MPMX19_06927at 202.344 kb on + strand, within MPMX19_06927at 202.344 kb on + strand, within MPMX19_06927at 202.344 kb on + strand, within MPMX19_06927at 202.345 kb on - strand, within MPMX19_06927at 202.345 kb on - strand, within MPMX19_06927at 202.404 kb on - strand, within MPMX19_06927at 202.416 kb on + strand, within MPMX19_06927at 202.416 kb on + strand, within MPMX19_06927at 202.416 kb on + strand, within MPMX19_06927at 202.416 kb on + strand, within MPMX19_06927at 202.416 kb on + strand, within MPMX19_06927at 202.417 kb on - strand, within MPMX19_06927at 202.417 kb on - strand, within MPMX19_06927at 202.417 kb on - strand, within MPMX19_06927at 202.855 kb on + strand, within MPMX19_06928at 202.856 kb on - strand, within MPMX19_06928at 202.918 kb on - strand, within MPMX19_06928at 202.918 kb on - strand, within MPMX19_06928at 202.918 kb on - strand, within MPMX19_06928at 203.221 kb on + strandat 203.221 kb on + strandat 203.378 kb on + strand, within MPMX19_06929at 203.435 kb on + strand, within MPMX19_06929at 203.436 kb on - strand, within MPMX19_06929at 203.436 kb on - strand, within MPMX19_06929at 203.436 kb on - strand, within MPMX19_06929at 203.436 kb on - strand, within MPMX19_06929at 203.436 kb on - strand, within MPMX19_06929at 203.775 kb on + strandat 203.776 kb on - strandat 203.810 kb on + strandat 203.811 kb on - strandat 203.826 kb on + strandat 203.843 kb on - strandat 203.862 kb on + strandat 203.863 kb on - strandat 203.863 kb on - strandat 204.030 kb on + strand, within MPMX19_06930at 204.030 kb on + strand, within MPMX19_06930at 204.031 kb on - strand, within MPMX19_06930at 204.031 kb on - strand, within MPMX19_06930at 204.405 kb on - strand, within MPMX19_06931

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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202,344 + MPMX19_06927 0.43 -0.2
202,344 + MPMX19_06927 0.43 -1.4
202,344 + MPMX19_06927 0.43 -0.2
202,344 + MPMX19_06927 0.43 -0.9
202,345 - MPMX19_06927 0.43 +0.2
202,345 - MPMX19_06927 0.43 -1.0
202,404 - MPMX19_06927 0.52 +1.3
202,416 + MPMX19_06927 0.54 -0.2
202,416 + MPMX19_06927 0.54 -1.4
202,416 + MPMX19_06927 0.54 -1.8
202,416 + MPMX19_06927 0.54 +0.1
202,416 + MPMX19_06927 0.54 -0.3
202,417 - MPMX19_06927 0.54 +0.0
202,417 - MPMX19_06927 0.54 -0.3
202,417 - MPMX19_06927 0.54 -1.0
202,855 + MPMX19_06928 0.39 -0.3
202,856 - MPMX19_06928 0.40 -0.0
202,918 - MPMX19_06928 0.62 -1.1
202,918 - MPMX19_06928 0.62 -0.5
202,918 - MPMX19_06928 0.62 +0.2
203,221 + -0.1
203,221 + -0.5
203,378 + MPMX19_06929 0.15 -1.1
203,435 + MPMX19_06929 0.33 -0.5
203,436 - MPMX19_06929 0.34 -2.5
203,436 - MPMX19_06929 0.34 -1.0
203,436 - MPMX19_06929 0.34 -1.1
203,436 - MPMX19_06929 0.34 -0.8
203,436 - MPMX19_06929 0.34 +0.4
203,775 + +1.3
203,776 - -1.0
203,810 + -0.5
203,811 - -0.9
203,826 + -1.5
203,843 - +1.7
203,862 + -1.3
203,863 - -1.3
203,863 - +0.1
204,030 + MPMX19_06930 0.18 -1.9
204,030 + MPMX19_06930 0.18 +0.7
204,031 - MPMX19_06930 0.18 -2.8
204,031 - MPMX19_06930 0.18 -1.4
204,405 - MPMX19_06931 0.18 -2.2

Or see this region's nucleotide sequence