Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06750 and MPMX19_06751 are separated by 10 nucleotides MPMX19_06751 and MPMX19_06752 are separated by 17 nucleotides MPMX19_06752 and MPMX19_06753 are separated by 38 nucleotides
MPMX19_06750: MPMX19_06750 - Aliphatic sulfonates import ATP-binding protein SsuB, at 16,227 to 17,006
_06750
MPMX19_06751: MPMX19_06751 - Putative aliphatic sulfonates transport permease protein SsuC, at 17,017 to 17,811
_06751
MPMX19_06752: MPMX19_06752 - hypothetical protein, at 17,829 to 18,836
_06752
MPMX19_06753: MPMX19_06753 - Guanidinopropionase, at 18,875 to 19,891
_06753
Position (kb) 17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 17.018 kb on + strand at 17.018 kb on + strand at 17.159 kb on + strand, within MPMX19_06751 at 17.159 kb on + strand, within MPMX19_06751 at 17.160 kb on - strand, within MPMX19_06751 at 17.160 kb on - strand, within MPMX19_06751 at 17.204 kb on + strand, within MPMX19_06751 at 17.204 kb on + strand, within MPMX19_06751 at 17.204 kb on + strand, within MPMX19_06751 at 17.204 kb on + strand, within MPMX19_06751 at 17.204 kb on + strand, within MPMX19_06751 at 17.205 kb on - strand, within MPMX19_06751 at 17.205 kb on - strand, within MPMX19_06751 at 17.205 kb on - strand, within MPMX19_06751 at 17.205 kb on - strand, within MPMX19_06751 at 17.205 kb on - strand, within MPMX19_06751 at 17.238 kb on + strand, within MPMX19_06751 at 17.312 kb on + strand, within MPMX19_06751 at 17.313 kb on - strand, within MPMX19_06751 at 17.313 kb on - strand, within MPMX19_06751 at 17.471 kb on + strand, within MPMX19_06751 at 17.471 kb on + strand, within MPMX19_06751 at 17.471 kb on + strand, within MPMX19_06751 at 17.471 kb on + strand, within MPMX19_06751 at 17.471 kb on + strand, within MPMX19_06751 at 17.471 kb on + strand, within MPMX19_06751 at 17.472 kb on - strand, within MPMX19_06751 at 17.472 kb on - strand, within MPMX19_06751 at 17.472 kb on - strand, within MPMX19_06751 at 17.472 kb on - strand, within MPMX19_06751 at 17.472 kb on - strand, within MPMX19_06751 at 17.472 kb on - strand, within MPMX19_06751 at 17.472 kb on - strand, within MPMX19_06751 at 17.699 kb on + strand, within MPMX19_06751 at 17.699 kb on + strand, within MPMX19_06751 at 17.700 kb on - strand, within MPMX19_06751 at 17.983 kb on + strand, within MPMX19_06752 at 18.119 kb on - strand, within MPMX19_06752 at 18.505 kb on + strand, within MPMX19_06752 at 18.505 kb on + strand, within MPMX19_06752 at 18.505 kb on + strand, within MPMX19_06752 at 18.505 kb on + strand, within MPMX19_06752 at 18.506 kb on - strand, within MPMX19_06752 at 18.506 kb on - strand, within MPMX19_06752 at 18.506 kb on - strand, within MPMX19_06752 at 18.506 kb on - strand, within MPMX19_06752 at 18.676 kb on + strand, within MPMX19_06752 at 18.676 kb on + strand, within MPMX19_06752 at 18.676 kb on + strand, within MPMX19_06752 at 18.676 kb on + strand, within MPMX19_06752 at 18.676 kb on + strand, within MPMX19_06752 at 18.677 kb on - strand, within MPMX19_06752 at 18.850 kb on + strand at 18.851 kb on - strand at 18.851 kb on - strand at 19.134 kb on + strand, within MPMX19_06753 at 19.134 kb on + strand, within MPMX19_06753 at 19.134 kb on + strand, within MPMX19_06753 at 19.135 kb on - strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.312 kb on - strand, within MPMX19_06753 at 19.312 kb on - strand, within MPMX19_06753 at 19.353 kb on + strand, within MPMX19_06753 at 19.353 kb on + strand, within MPMX19_06753 at 19.354 kb on - strand, within MPMX19_06753 at 19.354 kb on - strand, within MPMX19_06753 at 19.354 kb on - strand, within MPMX19_06753 at 19.354 kb on - strand, within MPMX19_06753 at 19.354 kb on - strand, within MPMX19_06753 at 19.371 kb on + strand, within MPMX19_06753 at 19.372 kb on - strand, within MPMX19_06753 at 19.372 kb on - strand, within MPMX19_06753 at 19.452 kb on + strand, within MPMX19_06753 at 19.515 kb on + strand, within MPMX19_06753 at 19.515 kb on + strand, within MPMX19_06753 at 19.803 kb on + strand at 19.803 kb on + strand at 19.803 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 17,018 + +1.2 17,018 + -0.3 17,159 + MPMX19_06751 0.18 -1.0 17,159 + MPMX19_06751 0.18 -0.3 17,160 - MPMX19_06751 0.18 -0.3 17,160 - MPMX19_06751 0.18 -1.0 17,204 + MPMX19_06751 0.24 -1.0 17,204 + MPMX19_06751 0.24 +2.0 17,204 + MPMX19_06751 0.24 -2.5 17,204 + MPMX19_06751 0.24 +2.0 17,204 + MPMX19_06751 0.24 -0.6 17,205 - MPMX19_06751 0.24 -1.0 17,205 - MPMX19_06751 0.24 -0.6 17,205 - MPMX19_06751 0.24 +0.2 17,205 - MPMX19_06751 0.24 -0.3 17,205 - MPMX19_06751 0.24 -0.0 17,238 + MPMX19_06751 0.28 -1.0 17,312 + MPMX19_06751 0.37 -1.2 17,313 - MPMX19_06751 0.37 -1.5 17,313 - MPMX19_06751 0.37 -1.8 17,471 + MPMX19_06751 0.57 +0.7 17,471 + MPMX19_06751 0.57 -1.0 17,471 + MPMX19_06751 0.57 +1.5 17,471 + MPMX19_06751 0.57 -1.5 17,471 + MPMX19_06751 0.57 -1.0 17,471 + MPMX19_06751 0.57 -0.0 17,472 - MPMX19_06751 0.57 +1.2 17,472 - MPMX19_06751 0.57 -0.0 17,472 - MPMX19_06751 0.57 +1.1 17,472 - MPMX19_06751 0.57 +1.5 17,472 - MPMX19_06751 0.57 -0.5 17,472 - MPMX19_06751 0.57 +0.2 17,472 - MPMX19_06751 0.57 -1.3 17,699 + MPMX19_06751 0.86 +0.5 17,699 + MPMX19_06751 0.86 -0.9 17,700 - MPMX19_06751 0.86 -0.3 17,983 + MPMX19_06752 0.15 +0.4 18,119 - MPMX19_06752 0.29 -1.0 18,505 + MPMX19_06752 0.67 +0.2 18,505 + MPMX19_06752 0.67 -1.3 18,505 + MPMX19_06752 0.67 -1.0 18,505 + MPMX19_06752 0.67 -0.7 18,506 - MPMX19_06752 0.67 +0.2 18,506 - MPMX19_06752 0.67 -0.2 18,506 - MPMX19_06752 0.67 -1.9 18,506 - MPMX19_06752 0.67 +0.3 18,676 + MPMX19_06752 0.84 -1.9 18,676 + MPMX19_06752 0.84 -0.4 18,676 + MPMX19_06752 0.84 -0.0 18,676 + MPMX19_06752 0.84 +0.3 18,676 + MPMX19_06752 0.84 -1.9 18,677 - MPMX19_06752 0.84 -0.9 18,850 + -0.2 18,851 - -0.5 18,851 - +0.5 19,134 + MPMX19_06753 0.25 -0.4 19,134 + MPMX19_06753 0.25 +0.1 19,134 + MPMX19_06753 0.25 +0.4 19,135 - MPMX19_06753 0.26 +0.7 19,263 + MPMX19_06753 0.38 -0.5 19,263 + MPMX19_06753 0.38 -1.3 19,263 + MPMX19_06753 0.38 -0.8 19,263 + MPMX19_06753 0.38 +0.5 19,263 + MPMX19_06753 0.38 -0.8 19,263 + MPMX19_06753 0.38 -0.4 19,263 + MPMX19_06753 0.38 -1.3 19,263 + MPMX19_06753 0.38 -0.2 19,263 + MPMX19_06753 0.38 -0.1 19,263 + MPMX19_06753 0.38 -0.8 19,264 - MPMX19_06753 0.38 +0.5 19,264 - MPMX19_06753 0.38 -0.3 19,264 - MPMX19_06753 0.38 -0.8 19,264 - MPMX19_06753 0.38 -0.2 19,264 - MPMX19_06753 0.38 -2.2 19,264 - MPMX19_06753 0.38 -1.1 19,264 - MPMX19_06753 0.38 +1.0 19,264 - MPMX19_06753 0.38 -1.0 19,312 - MPMX19_06753 0.43 -1.9 19,312 - MPMX19_06753 0.43 -1.0 19,353 + MPMX19_06753 0.47 -0.5 19,353 + MPMX19_06753 0.47 +1.2 19,354 - MPMX19_06753 0.47 +0.1 19,354 - MPMX19_06753 0.47 -0.6 19,354 - MPMX19_06753 0.47 -0.5 19,354 - MPMX19_06753 0.47 +0.3 19,354 - MPMX19_06753 0.47 -0.0 19,371 + MPMX19_06753 0.49 -0.8 19,372 - MPMX19_06753 0.49 -3.0 19,372 - MPMX19_06753 0.49 -0.7 19,452 + MPMX19_06753 0.57 +1.4 19,515 + MPMX19_06753 0.63 -0.4 19,515 + MPMX19_06753 0.63 -0.6 19,803 + +0.2 19,803 + +0.6 19,803 + +0.1
Or see this region's nucleotide sequence