Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06523

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06521 and MPMX19_06522 overlap by 1 nucleotidesMPMX19_06522 and MPMX19_06523 are separated by 34 nucleotidesMPMX19_06523 and MPMX19_06524 are separated by 23 nucleotides MPMX19_06521: MPMX19_06521 - Putative aliphatic sulfonates-binding protein, at 306,183 to 307,202 _06521 MPMX19_06522: MPMX19_06522 - Putative aliphatic sulfonates transport permease protein SsuC, at 307,202 to 307,945 _06522 MPMX19_06523: MPMX19_06523 - hypothetical protein, at 307,980 to 310,343 _06523 MPMX19_06524: MPMX19_06524 - hypothetical protein, at 310,367 to 311,845 _06524 Position (kb) 307 308 309 310 311Strain fitness (log2 ratio) -2 -1 0 1 2at 307.179 kb on + strandat 307.179 kb on + strandat 307.179 kb on + strandat 307.179 kb on + strandat 307.179 kb on + strandat 307.179 kb on + strandat 307.217 kb on + strandat 307.217 kb on + strandat 307.217 kb on + strandat 307.218 kb on - strandat 307.283 kb on + strand, within MPMX19_06522at 307.283 kb on + strand, within MPMX19_06522at 307.283 kb on + strand, within MPMX19_06522at 307.283 kb on + strand, within MPMX19_06522at 307.283 kb on + strand, within MPMX19_06522at 307.283 kb on + strand, within MPMX19_06522at 307.691 kb on + strand, within MPMX19_06522at 307.691 kb on + strand, within MPMX19_06522at 307.691 kb on + strand, within MPMX19_06522at 307.691 kb on + strand, within MPMX19_06522at 308.028 kb on + strandat 308.028 kb on + strandat 308.028 kb on + strandat 308.028 kb on + strandat 308.121 kb on + strandat 308.121 kb on + strandat 308.229 kb on + strand, within MPMX19_06523at 308.229 kb on + strand, within MPMX19_06523at 308.230 kb on - strand, within MPMX19_06523at 308.230 kb on - strand, within MPMX19_06523at 308.230 kb on - strand, within MPMX19_06523at 308.230 kb on - strand, within MPMX19_06523at 308.230 kb on - strand, within MPMX19_06523at 308.230 kb on - strand, within MPMX19_06523at 308.230 kb on - strand, within MPMX19_06523at 308.244 kb on + strand, within MPMX19_06523at 308.244 kb on + strand, within MPMX19_06523at 308.244 kb on + strand, within MPMX19_06523at 308.244 kb on + strand, within MPMX19_06523at 308.245 kb on - strand, within MPMX19_06523at 308.245 kb on - strand, within MPMX19_06523at 308.335 kb on - strand, within MPMX19_06523at 308.370 kb on + strand, within MPMX19_06523at 308.370 kb on + strand, within MPMX19_06523at 308.370 kb on + strand, within MPMX19_06523at 308.736 kb on + strand, within MPMX19_06523at 308.736 kb on + strand, within MPMX19_06523at 308.737 kb on - strand, within MPMX19_06523at 308.737 kb on - strand, within MPMX19_06523at 308.765 kb on + strand, within MPMX19_06523at 308.765 kb on + strand, within MPMX19_06523at 308.765 kb on + strand, within MPMX19_06523at 308.765 kb on + strand, within MPMX19_06523at 308.766 kb on - strand, within MPMX19_06523at 308.766 kb on - strand, within MPMX19_06523at 308.766 kb on - strand, within MPMX19_06523at 308.862 kb on + strand, within MPMX19_06523at 308.862 kb on + strand, within MPMX19_06523at 308.863 kb on - strand, within MPMX19_06523at 308.863 kb on - strand, within MPMX19_06523at 308.863 kb on - strand, within MPMX19_06523at 308.863 kb on - strand, within MPMX19_06523at 308.863 kb on - strand, within MPMX19_06523at 308.866 kb on - strand, within MPMX19_06523at 308.967 kb on + strand, within MPMX19_06523at 308.967 kb on + strand, within MPMX19_06523at 309.241 kb on - strand, within MPMX19_06523at 309.241 kb on - strand, within MPMX19_06523at 309.241 kb on - strand, within MPMX19_06523at 309.382 kb on - strand, within MPMX19_06523at 309.382 kb on - strand, within MPMX19_06523at 309.382 kb on - strand, within MPMX19_06523at 309.382 kb on - strand, within MPMX19_06523at 309.705 kb on + strand, within MPMX19_06523at 309.705 kb on + strand, within MPMX19_06523at 309.705 kb on + strand, within MPMX19_06523at 309.706 kb on - strand, within MPMX19_06523at 309.706 kb on - strand, within MPMX19_06523at 309.706 kb on - strand, within MPMX19_06523at 309.706 kb on - strand, within MPMX19_06523at 309.706 kb on - strand, within MPMX19_06523at 309.706 kb on - strand, within MPMX19_06523at 309.706 kb on - strand, within MPMX19_06523at 309.822 kb on + strand, within MPMX19_06523at 310.030 kb on - strand, within MPMX19_06523at 310.030 kb on - strand, within MPMX19_06523at 310.030 kb on - strand, within MPMX19_06523at 310.030 kb on - strand, within MPMX19_06523at 310.030 kb on - strand, within MPMX19_06523at 310.030 kb on - strand, within MPMX19_06523at 310.114 kb on + strandat 310.114 kb on + strandat 310.114 kb on + strandat 310.114 kb on + strandat 310.114 kb on + strandat 310.114 kb on + strandat 310.114 kb on + strandat 310.115 kb on - strandat 310.115 kb on - strandat 310.115 kb on - strandat 310.115 kb on - strandat 310.115 kb on - strandat 310.115 kb on - strandat 310.115 kb on - strandat 310.115 kb on - strandat 310.674 kb on + strand, within MPMX19_06524at 310.674 kb on + strand, within MPMX19_06524at 310.674 kb on + strand, within MPMX19_06524at 310.674 kb on + strand, within MPMX19_06524at 310.674 kb on + strand, within MPMX19_06524at 310.674 kb on + strand, within MPMX19_06524at 310.674 kb on + strand, within MPMX19_06524at 310.675 kb on - strand, within MPMX19_06524at 310.675 kb on - strand, within MPMX19_06524at 310.675 kb on - strand, within MPMX19_06524at 310.675 kb on - strand, within MPMX19_06524at 310.675 kb on - strand, within MPMX19_06524at 310.675 kb on - strand, within MPMX19_06524at 310.675 kb on - strand, within MPMX19_06524at 310.675 kb on - strand, within MPMX19_06524

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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307,179 + -0.9
307,179 + -1.6
307,179 + -0.8
307,179 + -0.1
307,179 + +0.2
307,179 + +0.4
307,217 + -0.7
307,217 + +1.2
307,217 + -0.2
307,218 - +0.5
307,283 + MPMX19_06522 0.11 +0.1
307,283 + MPMX19_06522 0.11 +0.2
307,283 + MPMX19_06522 0.11 -0.9
307,283 + MPMX19_06522 0.11 -0.3
307,283 + MPMX19_06522 0.11 -0.0
307,283 + MPMX19_06522 0.11 -0.3
307,691 + MPMX19_06522 0.66 -1.2
307,691 + MPMX19_06522 0.66 -0.8
307,691 + MPMX19_06522 0.66 -0.4
307,691 + MPMX19_06522 0.66 -0.4
308,028 + -0.0
308,028 + -0.5
308,028 + -1.1
308,028 + -0.5
308,121 + +0.2
308,121 + -0.8
308,229 + MPMX19_06523 0.11 -0.9
308,229 + MPMX19_06523 0.11 +1.1
308,230 - MPMX19_06523 0.11 +0.2
308,230 - MPMX19_06523 0.11 -1.4
308,230 - MPMX19_06523 0.11 -1.8
308,230 - MPMX19_06523 0.11 -1.0
308,230 - MPMX19_06523 0.11 +0.4
308,230 - MPMX19_06523 0.11 +0.7
308,230 - MPMX19_06523 0.11 -1.3
308,244 + MPMX19_06523 0.11 -0.5
308,244 + MPMX19_06523 0.11 +0.0
308,244 + MPMX19_06523 0.11 -0.0
308,244 + MPMX19_06523 0.11 -1.4
308,245 - MPMX19_06523 0.11 -1.6
308,245 - MPMX19_06523 0.11 -1.3
308,335 - MPMX19_06523 0.15 -0.6
308,370 + MPMX19_06523 0.16 -0.2
308,370 + MPMX19_06523 0.16 +0.2
308,370 + MPMX19_06523 0.16 -0.3
308,736 + MPMX19_06523 0.32 -0.6
308,736 + MPMX19_06523 0.32 -1.3
308,737 - MPMX19_06523 0.32 -0.3
308,737 - MPMX19_06523 0.32 -0.1
308,765 + MPMX19_06523 0.33 +0.5
308,765 + MPMX19_06523 0.33 -1.3
308,765 + MPMX19_06523 0.33 -2.7
308,765 + MPMX19_06523 0.33 -0.9
308,766 - MPMX19_06523 0.33 -0.8
308,766 - MPMX19_06523 0.33 +1.0
308,766 - MPMX19_06523 0.33 -0.1
308,862 + MPMX19_06523 0.37 +0.1
308,862 + MPMX19_06523 0.37 -1.4
308,863 - MPMX19_06523 0.37 -1.1
308,863 - MPMX19_06523 0.37 -0.6
308,863 - MPMX19_06523 0.37 -0.4
308,863 - MPMX19_06523 0.37 +0.3
308,863 - MPMX19_06523 0.37 -0.3
308,866 - MPMX19_06523 0.37 -2.3
308,967 + MPMX19_06523 0.42 -2.4
308,967 + MPMX19_06523 0.42 -1.2
309,241 - MPMX19_06523 0.53 -0.5
309,241 - MPMX19_06523 0.53 -1.4
309,241 - MPMX19_06523 0.53 -1.1
309,382 - MPMX19_06523 0.59 +0.5
309,382 - MPMX19_06523 0.59 -0.0
309,382 - MPMX19_06523 0.59 +2.0
309,382 - MPMX19_06523 0.59 -0.9
309,705 + MPMX19_06523 0.73 -1.5
309,705 + MPMX19_06523 0.73 +0.5
309,705 + MPMX19_06523 0.73 +1.1
309,706 - MPMX19_06523 0.73 -0.6
309,706 - MPMX19_06523 0.73 +0.3
309,706 - MPMX19_06523 0.73 -1.9
309,706 - MPMX19_06523 0.73 +0.4
309,706 - MPMX19_06523 0.73 +0.5
309,706 - MPMX19_06523 0.73 -0.7
309,706 - MPMX19_06523 0.73 -0.5
309,822 + MPMX19_06523 0.78 -2.7
310,030 - MPMX19_06523 0.87 +0.9
310,030 - MPMX19_06523 0.87 -0.3
310,030 - MPMX19_06523 0.87 +1.0
310,030 - MPMX19_06523 0.87 -1.5
310,030 - MPMX19_06523 0.87 +0.1
310,030 - MPMX19_06523 0.87 -0.3
310,114 + -0.6
310,114 + -1.1
310,114 + -1.0
310,114 + -0.6
310,114 + +0.8
310,114 + -0.8
310,114 + -1.3
310,115 - +0.7
310,115 - -1.0
310,115 - +1.7
310,115 - -0.6
310,115 - -0.3
310,115 - -2.0
310,115 - -0.1
310,115 - -0.6
310,674 + MPMX19_06524 0.21 -0.6
310,674 + MPMX19_06524 0.21 +1.0
310,674 + MPMX19_06524 0.21 -0.9
310,674 + MPMX19_06524 0.21 -1.4
310,674 + MPMX19_06524 0.21 -0.3
310,674 + MPMX19_06524 0.21 +1.3
310,674 + MPMX19_06524 0.21 +0.7
310,675 - MPMX19_06524 0.21 -0.5
310,675 - MPMX19_06524 0.21 -1.0
310,675 - MPMX19_06524 0.21 +0.3
310,675 - MPMX19_06524 0.21 -0.4
310,675 - MPMX19_06524 0.21 +0.4
310,675 - MPMX19_06524 0.21 +0.2
310,675 - MPMX19_06524 0.21 -0.6
310,675 - MPMX19_06524 0.21 +0.5

Or see this region's nucleotide sequence