Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06373 and MPMX19_06374 are separated by 133 nucleotides MPMX19_06374 and MPMX19_06375 are separated by 76 nucleotides MPMX19_06375 and MPMX19_06376 are separated by 576 nucleotides
MPMX19_06373: MPMX19_06373 - Lipoprotein signal peptidase, at 141,220 to 141,708
_06373
MPMX19_06374: MPMX19_06374 - HTH-type transcriptional regulator HmrR, at 141,842 to 142,264
_06374
MPMX19_06375: MPMX19_06375 - Zinc/cadmium/lead-transporting P-type ATPase, at 142,341 to 144,602
_06375
MPMX19_06376: MPMX19_06376 - Apolipoprotein N-acyltransferase, at 145,179 to 146,573
_06376
Position (kb) 142
143
144
145 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 141.606 kb on + strand, within MPMX19_06373 at 141.606 kb on + strand, within MPMX19_06373 at 141.606 kb on + strand, within MPMX19_06373 at 141.607 kb on - strand, within MPMX19_06373 at 141.607 kb on - strand, within MPMX19_06373 at 141.607 kb on - strand, within MPMX19_06373 at 141.664 kb on - strand at 141.664 kb on - strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.677 kb on + strand at 141.678 kb on - strand at 141.678 kb on - strand at 141.678 kb on - strand at 141.678 kb on - strand at 141.678 kb on - strand at 141.678 kb on - strand at 141.678 kb on - strand at 141.678 kb on - strand at 141.678 kb on - strand at 141.777 kb on + strand at 141.777 kb on + strand at 141.778 kb on - strand at 141.782 kb on + strand at 141.782 kb on + strand at 141.782 kb on + strand at 141.783 kb on - strand at 141.783 kb on - strand at 141.783 kb on - strand at 141.783 kb on - strand at 141.830 kb on + strand at 141.830 kb on + strand at 141.830 kb on + strand at 141.831 kb on - strand at 141.831 kb on - strand at 141.831 kb on - strand at 141.831 kb on - strand at 142.140 kb on + strand, within MPMX19_06374 at 142.140 kb on + strand, within MPMX19_06374 at 142.140 kb on + strand, within MPMX19_06374 at 142.140 kb on + strand, within MPMX19_06374 at 142.141 kb on - strand, within MPMX19_06374 at 142.141 kb on - strand, within MPMX19_06374 at 142.141 kb on - strand, within MPMX19_06374 at 142.141 kb on - strand, within MPMX19_06374 at 142.141 kb on - strand, within MPMX19_06374 at 142.141 kb on - strand, within MPMX19_06374 at 142.141 kb on - strand, within MPMX19_06374 at 142.197 kb on + strand, within MPMX19_06374 at 142.197 kb on + strand, within MPMX19_06374 at 142.197 kb on + strand, within MPMX19_06374 at 142.197 kb on + strand, within MPMX19_06374 at 142.197 kb on + strand, within MPMX19_06374 at 142.197 kb on + strand, within MPMX19_06374 at 142.197 kb on + strand, within MPMX19_06374 at 142.197 kb on + strand, within MPMX19_06374 at 142.198 kb on - strand, within MPMX19_06374 at 142.198 kb on - strand, within MPMX19_06374 at 142.198 kb on - strand, within MPMX19_06374 at 142.198 kb on - strand, within MPMX19_06374 at 142.198 kb on - strand, within MPMX19_06374 at 142.198 kb on - strand, within MPMX19_06374 at 142.200 kb on + strand, within MPMX19_06374 at 142.305 kb on + strand at 142.307 kb on - strand at 142.341 kb on - strand at 142.341 kb on - strand at 142.623 kb on - strand, within MPMX19_06375 at 142.623 kb on - strand, within MPMX19_06375 at 142.644 kb on + strand, within MPMX19_06375 at 142.645 kb on - strand, within MPMX19_06375 at 142.809 kb on + strand, within MPMX19_06375 at 142.809 kb on + strand, within MPMX19_06375 at 142.809 kb on + strand, within MPMX19_06375 at 142.809 kb on + strand, within MPMX19_06375 at 142.809 kb on + strand, within MPMX19_06375 at 142.810 kb on - strand, within MPMX19_06375 at 142.810 kb on - strand, within MPMX19_06375 at 142.810 kb on - strand, within MPMX19_06375 at 142.810 kb on - strand, within MPMX19_06375 at 142.810 kb on - strand, within MPMX19_06375 at 143.445 kb on + strand, within MPMX19_06375 at 143.445 kb on + strand, within MPMX19_06375 at 143.445 kb on + strand, within MPMX19_06375 at 143.445 kb on + strand, within MPMX19_06375 at 143.445 kb on + strand, within MPMX19_06375 at 143.446 kb on - strand, within MPMX19_06375 at 143.529 kb on + strand, within MPMX19_06375 at 143.529 kb on + strand, within MPMX19_06375 at 143.529 kb on + strand, within MPMX19_06375 at 143.529 kb on + strand, within MPMX19_06375 at 143.529 kb on + strand, within MPMX19_06375 at 143.529 kb on + strand, within MPMX19_06375 at 143.529 kb on + strand, within MPMX19_06375 at 143.529 kb on + strand, within MPMX19_06375 at 143.529 kb on + strand, within MPMX19_06375 at 143.529 kb on + strand, within MPMX19_06375 at 143.529 kb on + strand, within MPMX19_06375 at 143.529 kb on + strand, within MPMX19_06375 at 143.530 kb on - strand, within MPMX19_06375 at 143.530 kb on - strand, within MPMX19_06375 at 143.530 kb on - strand, within MPMX19_06375 at 143.530 kb on - strand, within MPMX19_06375 at 143.530 kb on - strand, within MPMX19_06375 at 143.530 kb on - strand, within MPMX19_06375 at 143.530 kb on - strand, within MPMX19_06375 at 143.530 kb on - strand, within MPMX19_06375 at 143.530 kb on - strand, within MPMX19_06375 at 143.530 kb on - strand, within MPMX19_06375 at 143.530 kb on - strand, within MPMX19_06375 at 143.530 kb on - strand, within MPMX19_06375 at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.675 kb on + strand at 144.676 kb on - strand at 144.676 kb on - strand at 144.676 kb on - strand at 144.676 kb on - strand at 144.676 kb on - strand at 144.676 kb on - strand at 144.676 kb on - strand at 144.676 kb on - strand at 144.676 kb on - strand at 144.676 kb on - strand at 144.676 kb on - strand at 144.676 kb on - strand at 144.676 kb on - strand at 144.676 kb on - strand at 144.676 kb on - strand at 144.676 kb on - strand at 144.676 kb on - strand at 144.676 kb on - strand at 144.676 kb on - strand at 144.676 kb on - strand at 144.734 kb on + strand at 144.734 kb on + strand at 144.734 kb on + strand at 144.734 kb on + strand at 144.756 kb on + strand at 144.756 kb on + strand at 144.757 kb on - strand at 144.757 kb on - strand at 144.806 kb on + strand at 144.807 kb on - strand at 144.841 kb on + strand at 144.841 kb on + strand at 144.841 kb on + strand at 144.842 kb on - strand at 144.842 kb on - strand at 144.983 kb on + strand at 144.983 kb on + strand at 144.983 kb on + strand at 144.983 kb on + strand at 144.983 kb on + strand at 144.983 kb on + strand at 144.983 kb on + strand at 144.983 kb on + strand at 144.983 kb on + strand at 144.983 kb on + strand at 144.983 kb on + strand at 144.983 kb on + strand at 144.983 kb on + strand at 144.983 kb on + strand at 144.983 kb on + strand at 144.983 kb on + strand at 144.983 kb on + strand at 144.983 kb on + strand at 144.983 kb on + strand at 144.983 kb on + strand at 144.984 kb on - strand at 144.984 kb on - strand at 144.984 kb on - strand at 144.984 kb on - strand at 144.984 kb on - strand at 144.984 kb on - strand at 144.984 kb on - strand at 144.984 kb on - strand at 144.984 kb on - strand at 144.984 kb on - strand at 144.984 kb on - strand at 144.984 kb on - strand at 144.984 kb on - strand at 144.984 kb on - strand at 144.984 kb on - strand at 144.984 kb on - strand at 144.984 kb on - strand at 144.984 kb on - strand at 144.984 kb on - strand at 144.984 kb on - strand at 144.984 kb on - strand at 144.984 kb on - strand at 144.984 kb on - strand at 144.984 kb on - strand at 144.984 kb on - strand at 144.984 kb on - strand at 145.273 kb on - strand at 145.273 kb on - strand at 145.273 kb on - strand at 145.273 kb on - strand at 145.318 kb on + strand at 145.318 kb on + strand at 145.318 kb on - strand at 145.319 kb on - strand, within MPMX19_06376 at 145.319 kb on - strand, within MPMX19_06376 at 145.319 kb on - strand, within MPMX19_06376 at 145.319 kb on - strand, within MPMX19_06376 at 145.319 kb on - strand, within MPMX19_06376 at 145.319 kb on - strand, within MPMX19_06376 at 145.402 kb on + strand, within MPMX19_06376 at 145.600 kb on + strand, within MPMX19_06376 at 145.600 kb on + strand, within MPMX19_06376 at 145.600 kb on + strand, within MPMX19_06376 at 145.600 kb on + strand, within MPMX19_06376 at 145.601 kb on - strand, within MPMX19_06376 at 145.601 kb on - strand, within MPMX19_06376 at 145.601 kb on - strand, within MPMX19_06376 at 145.601 kb on - strand, within MPMX19_06376
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 141,606 + MPMX19_06373 0.79 -2.0 141,606 + MPMX19_06373 0.79 -0.2 141,606 + MPMX19_06373 0.79 -0.6 141,607 - MPMX19_06373 0.79 +0.7 141,607 - MPMX19_06373 0.79 -0.2 141,607 - MPMX19_06373 0.79 -0.3 141,664 - +2.0 141,664 - +0.1 141,677 + +0.4 141,677 + -0.5 141,677 + -1.3 141,677 + +0.7 141,677 + -0.1 141,677 + -1.6 141,677 + +0.1 141,677 + -0.7 141,677 + -0.0 141,677 + -0.8 141,677 + -1.7 141,677 + -0.1 141,677 + -0.9 141,677 + -1.5 141,678 - +0.7 141,678 - -0.6 141,678 - -0.6 141,678 - -1.1 141,678 - -1.4 141,678 - -0.0 141,678 - -1.3 141,678 - -0.6 141,678 - -0.8 141,777 + -0.3 141,777 + -1.5 141,778 - -0.9 141,782 + -0.6 141,782 + +0.7 141,782 + +0.5 141,783 - -1.2 141,783 - +1.3 141,783 - -0.9 141,783 - -1.2 141,830 + -1.5 141,830 + -0.9 141,830 + -1.1 141,831 - +1.1 141,831 - -0.1 141,831 - -0.6 141,831 - +0.3 142,140 + MPMX19_06374 0.70 -0.3 142,140 + MPMX19_06374 0.70 -0.4 142,140 + MPMX19_06374 0.70 -0.2 142,140 + MPMX19_06374 0.70 +0.9 142,141 - MPMX19_06374 0.71 -0.3 142,141 - MPMX19_06374 0.71 -0.6 142,141 - MPMX19_06374 0.71 -0.6 142,141 - MPMX19_06374 0.71 -1.9 142,141 - MPMX19_06374 0.71 -2.3 142,141 - MPMX19_06374 0.71 -0.0 142,141 - MPMX19_06374 0.71 +0.9 142,197 + MPMX19_06374 0.84 +0.4 142,197 + MPMX19_06374 0.84 +0.1 142,197 + MPMX19_06374 0.84 +0.4 142,197 + MPMX19_06374 0.84 -1.6 142,197 + MPMX19_06374 0.84 -0.2 142,197 + MPMX19_06374 0.84 +0.7 142,197 + MPMX19_06374 0.84 +1.5 142,197 + MPMX19_06374 0.84 +0.2 142,198 - MPMX19_06374 0.84 -0.1 142,198 - MPMX19_06374 0.84 +0.3 142,198 - MPMX19_06374 0.84 -0.6 142,198 - MPMX19_06374 0.84 -1.1 142,198 - MPMX19_06374 0.84 +0.3 142,198 - MPMX19_06374 0.84 -0.2 142,200 + MPMX19_06374 0.85 -0.8 142,305 + -0.9 142,307 - +0.4 142,341 - +0.0 142,341 - -0.5 142,623 - MPMX19_06375 0.12 -1.9 142,623 - MPMX19_06375 0.12 -0.8 142,644 + MPMX19_06375 0.13 -0.9 142,645 - MPMX19_06375 0.13 -0.9 142,809 + MPMX19_06375 0.21 +0.7 142,809 + MPMX19_06375 0.21 +0.1 142,809 + MPMX19_06375 0.21 +0.3 142,809 + MPMX19_06375 0.21 -1.5 142,809 + MPMX19_06375 0.21 -1.4 142,810 - MPMX19_06375 0.21 +0.4 142,810 - MPMX19_06375 0.21 -0.8 142,810 - MPMX19_06375 0.21 -0.7 142,810 - MPMX19_06375 0.21 -1.6 142,810 - MPMX19_06375 0.21 -0.3 143,445 + MPMX19_06375 0.49 -0.2 143,445 + MPMX19_06375 0.49 -1.0 143,445 + MPMX19_06375 0.49 -1.7 143,445 + MPMX19_06375 0.49 +0.1 143,445 + MPMX19_06375 0.49 +0.8 143,446 - MPMX19_06375 0.49 -0.6 143,529 + MPMX19_06375 0.53 -0.6 143,529 + MPMX19_06375 0.53 -2.3 143,529 + MPMX19_06375 0.53 -2.0 143,529 + MPMX19_06375 0.53 -0.4 143,529 + MPMX19_06375 0.53 -1.1 143,529 + MPMX19_06375 0.53 -0.3 143,529 + MPMX19_06375 0.53 +0.1 143,529 + MPMX19_06375 0.53 -1.5 143,529 + MPMX19_06375 0.53 -0.9 143,529 + MPMX19_06375 0.53 -0.8 143,529 + MPMX19_06375 0.53 -0.6 143,529 + MPMX19_06375 0.53 -2.5 143,530 - MPMX19_06375 0.53 +0.7 143,530 - MPMX19_06375 0.53 -0.9 143,530 - MPMX19_06375 0.53 -1.1 143,530 - MPMX19_06375 0.53 +0.0 143,530 - MPMX19_06375 0.53 -0.0 143,530 - MPMX19_06375 0.53 -0.3 143,530 - MPMX19_06375 0.53 -1.2 143,530 - MPMX19_06375 0.53 -1.6 143,530 - MPMX19_06375 0.53 +1.7 143,530 - MPMX19_06375 0.53 -0.6 143,530 - MPMX19_06375 0.53 -0.2 143,530 - MPMX19_06375 0.53 -0.6 144,675 + +0.3 144,675 + -0.7 144,675 + -0.9 144,675 + +0.4 144,675 + -0.2 144,675 + -0.0 144,675 + -2.5 144,675 + +2.7 144,675 + +2.1 144,675 + -0.5 144,675 + -0.6 144,675 + -1.3 144,675 + +1.7 144,675 + +0.0 144,675 + -0.5 144,675 + +0.1 144,675 + -1.4 144,675 + +0.5 144,675 + +0.1 144,675 + +0.4 144,675 + -0.3 144,675 + -1.4 144,675 + -1.0 144,675 + -1.1 144,675 + +0.7 144,675 + +0.1 144,675 + -0.3 144,675 + -0.1 144,676 - -0.1 144,676 - -0.1 144,676 - -0.6 144,676 - -1.5 144,676 - -0.6 144,676 - -0.1 144,676 - -0.9 144,676 - -0.0 144,676 - +0.0 144,676 - -1.6 144,676 - -0.1 144,676 - +0.4 144,676 - +1.4 144,676 - -0.9 144,676 - -2.1 144,676 - +0.3 144,676 - -0.6 144,676 - +0.1 144,676 - -1.9 144,676 - +0.1 144,734 + +0.3 144,734 + +0.3 144,734 + +0.8 144,734 + -0.4 144,756 + -2.0 144,756 + -0.8 144,757 - -1.6 144,757 - +0.1 144,806 + -1.6 144,807 - +1.5 144,841 + -1.0 144,841 + +1.3 144,841 + -1.9 144,842 - +1.4 144,842 - -0.6 144,983 + +0.9 144,983 + -1.1 144,983 + -1.6 144,983 + +0.7 144,983 + -0.0 144,983 + -0.3 144,983 + -0.7 144,983 + -1.3 144,983 + -1.0 144,983 + -0.8 144,983 + +0.7 144,983 + -0.1 144,983 + +0.0 144,983 + +0.9 144,983 + -0.4 144,983 + -0.7 144,983 + +0.1 144,983 + +0.5 144,983 + -0.4 144,983 + -2.5 144,984 - +0.3 144,984 - +0.2 144,984 - -1.6 144,984 - -1.5 144,984 - -0.9 144,984 - -1.5 144,984 - -0.9 144,984 - +0.7 144,984 - -1.0 144,984 - -2.3 144,984 - -0.6 144,984 - +0.9 144,984 - -0.6 144,984 - +0.3 144,984 - +0.8 144,984 - +0.2 144,984 - -2.1 144,984 - -1.8 144,984 - -2.5 144,984 - -0.4 144,984 - -2.5 144,984 - +0.2 144,984 - -1.2 144,984 - +1.0 144,984 - -1.1 144,984 - -1.0 145,273 - -0.6 145,273 - +1.7 145,273 - +1.6 145,273 - -1.0 145,318 + -0.6 145,318 + -2.2 145,318 - -0.2 145,319 - MPMX19_06376 0.10 -0.1 145,319 - MPMX19_06376 0.10 -0.4 145,319 - MPMX19_06376 0.10 +0.2 145,319 - MPMX19_06376 0.10 -0.3 145,319 - MPMX19_06376 0.10 +0.9 145,319 - MPMX19_06376 0.10 -0.4 145,402 + MPMX19_06376 0.16 -0.2 145,600 + MPMX19_06376 0.30 -0.3 145,600 + MPMX19_06376 0.30 -0.6 145,600 + MPMX19_06376 0.30 -0.9 145,600 + MPMX19_06376 0.30 -0.6 145,601 - MPMX19_06376 0.30 +0.3 145,601 - MPMX19_06376 0.30 -0.2 145,601 - MPMX19_06376 0.30 -3.1 145,601 - MPMX19_06376 0.30 -0.8
Or see this region's nucleotide sequence