Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05838 and MPMX19_05839 are separated by 69 nucleotides MPMX19_05839 and MPMX19_05840 are separated by 161 nucleotides MPMX19_05840 and MPMX19_05841 are separated by 151 nucleotides
MPMX19_05838: MPMX19_05838 - hypothetical protein, at 569,370 to 570,341
_05838
MPMX19_05839: MPMX19_05839 - Chemoreceptor glutamine deamidase CheD, at 570,411 to 571,061
_05839
MPMX19_05840: MPMX19_05840 - hypothetical protein, at 571,223 to 572,704
_05840
MPMX19_05841: MPMX19_05841 - hypothetical protein, at 572,856 to 574,739
_05841
Position (kb) 571
572
573 Strain fitness (log2 ratio) -2
-1
0
1
2 at 570.409 kb on + strand at 570.410 kb on - strand at 570.410 kb on - strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.773 kb on - strand, within MPMX19_05839 at 570.856 kb on + strand, within MPMX19_05839 at 570.856 kb on + strand, within MPMX19_05839 at 570.856 kb on + strand, within MPMX19_05839 at 570.856 kb on + strand, within MPMX19_05839 at 570.856 kb on + strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.976 kb on + strand, within MPMX19_05839 at 570.977 kb on - strand, within MPMX19_05839 at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.136 kb on - strand at 571.208 kb on + strand at 571.208 kb on + strand at 571.209 kb on - strand at 571.209 kb on - strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.228 kb on - strand at 571.228 kb on - strand at 571.228 kb on - strand at 571.228 kb on - strand at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.811 kb on + strand, within MPMX19_05840 at 571.811 kb on + strand, within MPMX19_05840 at 571.811 kb on + strand, within MPMX19_05840 at 571.811 kb on + strand, within MPMX19_05840 at 571.812 kb on - strand, within MPMX19_05840 at 571.812 kb on - strand, within MPMX19_05840 at 571.812 kb on - strand, within MPMX19_05840 at 571.812 kb on - strand, within MPMX19_05840 at 571.812 kb on - strand, within MPMX19_05840 at 572.124 kb on + strand, within MPMX19_05840 at 572.124 kb on + strand, within MPMX19_05840 at 572.124 kb on + strand, within MPMX19_05840 at 572.124 kb on + strand, within MPMX19_05840 at 572.124 kb on + strand, within MPMX19_05840 at 572.125 kb on - strand, within MPMX19_05840 at 572.125 kb on - strand, within MPMX19_05840 at 572.125 kb on - strand, within MPMX19_05840 at 572.125 kb on - strand, within MPMX19_05840 at 572.125 kb on - strand, within MPMX19_05840 at 572.125 kb on - strand, within MPMX19_05840 at 572.125 kb on - strand, within MPMX19_05840 at 572.125 kb on - strand, within MPMX19_05840 at 572.157 kb on + strand, within MPMX19_05840 at 572.157 kb on + strand, within MPMX19_05840 at 572.157 kb on + strand, within MPMX19_05840 at 572.157 kb on + strand, within MPMX19_05840 at 572.157 kb on + strand, within MPMX19_05840 at 572.157 kb on + strand, within MPMX19_05840 at 572.157 kb on + strand, within MPMX19_05840 at 572.157 kb on + strand, within MPMX19_05840 at 572.157 kb on + strand, within MPMX19_05840 at 572.157 kb on + strand, within MPMX19_05840 at 572.157 kb on + strand, within MPMX19_05840 at 572.158 kb on - strand, within MPMX19_05840 at 572.158 kb on - strand, within MPMX19_05840 at 572.158 kb on - strand, within MPMX19_05840 at 572.158 kb on - strand, within MPMX19_05840 at 572.158 kb on - strand, within MPMX19_05840 at 572.158 kb on - strand, within MPMX19_05840 at 572.158 kb on - strand, within MPMX19_05840 at 572.158 kb on - strand, within MPMX19_05840 at 572.158 kb on - strand, within MPMX19_05840 at 572.158 kb on - strand, within MPMX19_05840 at 572.158 kb on - strand, within MPMX19_05840 at 572.158 kb on - strand, within MPMX19_05840 at 572.220 kb on + strand, within MPMX19_05840 at 572.221 kb on - strand, within MPMX19_05840 at 572.221 kb on - strand, within MPMX19_05840 at 572.221 kb on - strand, within MPMX19_05840 at 572.221 kb on - strand, within MPMX19_05840 at 572.221 kb on - strand, within MPMX19_05840 at 572.221 kb on - strand, within MPMX19_05840 at 572.246 kb on + strand, within MPMX19_05840 at 572.516 kb on - strand, within MPMX19_05840 at 572.516 kb on - strand, within MPMX19_05840 at 572.517 kb on + strand, within MPMX19_05840 at 572.517 kb on + strand, within MPMX19_05840 at 572.518 kb on - strand, within MPMX19_05840 at 572.740 kb on + strand at 572.740 kb on + strand at 572.741 kb on - strand at 572.745 kb on + strand at 572.745 kb on + strand at 572.745 kb on + strand at 572.745 kb on + strand at 572.746 kb on - strand at 572.746 kb on - strand at 572.746 kb on - strand at 572.785 kb on + strand at 572.785 kb on + strand at 572.785 kb on + strand at 572.785 kb on + strand at 572.785 kb on + strand at 572.785 kb on + strand at 572.785 kb on + strand at 572.786 kb on - strand at 572.786 kb on - strand at 572.786 kb on - strand at 572.786 kb on - strand at 572.786 kb on - strand at 573.223 kb on - strand, within MPMX19_05841 at 573.225 kb on + strand, within MPMX19_05841 at 573.226 kb on - strand, within MPMX19_05841 at 573.226 kb on - strand, within MPMX19_05841 at 573.237 kb on + strand, within MPMX19_05841 at 573.238 kb on - strand, within MPMX19_05841 at 573.330 kb on + strand, within MPMX19_05841 at 573.330 kb on + strand, within MPMX19_05841 at 573.330 kb on + strand, within MPMX19_05841 at 573.331 kb on - strand, within MPMX19_05841 at 573.331 kb on - strand, within MPMX19_05841 at 573.331 kb on - strand, within MPMX19_05841 at 573.331 kb on - strand, within MPMX19_05841 at 573.651 kb on + strand, within MPMX19_05841 at 573.652 kb on - strand, within MPMX19_05841 at 573.652 kb on - strand, within MPMX19_05841
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 570,409 + -1.4 570,410 - -0.5 570,410 - -1.4 570,463 + -2.7 570,463 + -1.6 570,463 + +0.0 570,463 + -1.6 570,463 + -0.8 570,463 + -1.6 570,463 + -2.7 570,463 + +0.3 570,464 - -0.4 570,464 - +0.0 570,464 - -2.2 570,464 - -1.1 570,464 - +0.5 570,464 - -0.5 570,464 - +0.4 570,464 - -1.0 570,464 - -0.3 570,464 - +0.0 570,464 - -1.5 570,613 + MPMX19_05839 0.31 +0.0 570,613 + MPMX19_05839 0.31 -0.7 570,613 + MPMX19_05839 0.31 +0.0 570,613 + MPMX19_05839 0.31 -1.4 570,613 + MPMX19_05839 0.31 -1.1 570,613 + MPMX19_05839 0.31 -0.4 570,613 + MPMX19_05839 0.31 -1.9 570,613 + MPMX19_05839 0.31 -1.0 570,613 + MPMX19_05839 0.31 +0.3 570,613 + MPMX19_05839 0.31 -0.2 570,613 + MPMX19_05839 0.31 -0.8 570,614 - MPMX19_05839 0.31 +0.5 570,614 - MPMX19_05839 0.31 +0.2 570,614 - MPMX19_05839 0.31 +0.2 570,614 - MPMX19_05839 0.31 -0.9 570,614 - MPMX19_05839 0.31 +0.6 570,614 - MPMX19_05839 0.31 -0.4 570,773 - MPMX19_05839 0.56 -0.5 570,856 + MPMX19_05839 0.68 -0.7 570,856 + MPMX19_05839 0.68 +1.5 570,856 + MPMX19_05839 0.68 -1.4 570,856 + MPMX19_05839 0.68 -1.1 570,856 + MPMX19_05839 0.68 -0.1 570,857 - MPMX19_05839 0.69 -0.9 570,857 - MPMX19_05839 0.69 -0.2 570,857 - MPMX19_05839 0.69 -0.1 570,857 - MPMX19_05839 0.69 -1.5 570,857 - MPMX19_05839 0.69 +0.6 570,857 - MPMX19_05839 0.69 -0.7 570,976 + MPMX19_05839 0.87 -0.3 570,977 - MPMX19_05839 0.87 -1.2 571,097 + +0.0 571,097 + -1.6 571,097 + +0.0 571,097 + -0.0 571,097 + -1.0 571,097 + -1.4 571,097 + -1.4 571,097 + +0.2 571,097 + -0.4 571,097 + +0.2 571,098 - +0.1 571,098 - -2.2 571,098 - +0.3 571,098 - +0.8 571,098 - -0.7 571,098 - +0.2 571,098 - +0.6 571,098 - -0.7 571,098 - -1.1 571,098 - +0.6 571,098 - +0.2 571,098 - +0.7 571,136 - -0.1 571,208 + -1.7 571,208 + -2.2 571,209 - -0.6 571,209 - +1.1 571,215 + -1.2 571,215 + -2.2 571,215 + -1.2 571,215 + -0.4 571,215 + -0.6 571,215 + +1.8 571,215 + -1.6 571,215 + -1.0 571,215 + +0.9 571,215 + -0.3 571,215 + -1.2 571,215 + -0.9 571,215 + -0.3 571,215 + -0.4 571,215 + -0.3 571,215 + -1.2 571,215 + -1.9 571,215 + +1.5 571,216 - -0.2 571,216 - +0.0 571,216 - -1.4 571,216 - -1.7 571,216 - +0.1 571,216 - -0.6 571,216 - -0.1 571,216 - -1.0 571,216 - -0.5 571,216 - +0.2 571,216 - -1.4 571,216 - -1.5 571,227 + -0.8 571,227 + +0.7 571,227 + +0.1 571,227 + -1.4 571,227 + -0.2 571,227 + +1.6 571,227 + -0.3 571,227 + +0.7 571,227 + -0.9 571,227 + +1.3 571,227 + -1.2 571,227 + -0.3 571,227 + +1.6 571,228 - -0.7 571,228 - -0.4 571,228 - -0.3 571,228 - +0.8 571,431 + MPMX19_05840 0.14 -1.4 571,431 + MPMX19_05840 0.14 -1.4 571,431 + MPMX19_05840 0.14 +1.0 571,431 + MPMX19_05840 0.14 +0.9 571,431 + MPMX19_05840 0.14 +0.1 571,431 + MPMX19_05840 0.14 -0.4 571,431 + MPMX19_05840 0.14 +0.1 571,431 + MPMX19_05840 0.14 -0.8 571,431 + MPMX19_05840 0.14 +0.2 571,431 + MPMX19_05840 0.14 +0.3 571,431 + MPMX19_05840 0.14 -0.3 571,432 - MPMX19_05840 0.14 -1.6 571,432 - MPMX19_05840 0.14 +1.3 571,432 - MPMX19_05840 0.14 -0.5 571,432 - MPMX19_05840 0.14 +1.6 571,432 - MPMX19_05840 0.14 -0.5 571,432 - MPMX19_05840 0.14 +0.3 571,432 - MPMX19_05840 0.14 +0.9 571,811 + MPMX19_05840 0.40 -0.1 571,811 + MPMX19_05840 0.40 -0.9 571,811 + MPMX19_05840 0.40 +0.4 571,811 + MPMX19_05840 0.40 -0.8 571,812 - MPMX19_05840 0.40 +0.6 571,812 - MPMX19_05840 0.40 -2.2 571,812 - MPMX19_05840 0.40 -0.7 571,812 - MPMX19_05840 0.40 +0.4 571,812 - MPMX19_05840 0.40 +0.4 572,124 + MPMX19_05840 0.61 -0.5 572,124 + MPMX19_05840 0.61 -1.1 572,124 + MPMX19_05840 0.61 -1.4 572,124 + MPMX19_05840 0.61 +0.4 572,124 + MPMX19_05840 0.61 -0.4 572,125 - MPMX19_05840 0.61 -1.0 572,125 - MPMX19_05840 0.61 -0.5 572,125 - MPMX19_05840 0.61 +1.1 572,125 - MPMX19_05840 0.61 +0.8 572,125 - MPMX19_05840 0.61 -0.8 572,125 - MPMX19_05840 0.61 -1.3 572,125 - MPMX19_05840 0.61 -0.1 572,125 - MPMX19_05840 0.61 -0.3 572,157 + MPMX19_05840 0.63 +0.4 572,157 + MPMX19_05840 0.63 -0.7 572,157 + MPMX19_05840 0.63 -0.9 572,157 + MPMX19_05840 0.63 +0.0 572,157 + MPMX19_05840 0.63 -0.5 572,157 + MPMX19_05840 0.63 +0.3 572,157 + MPMX19_05840 0.63 -1.6 572,157 + MPMX19_05840 0.63 -0.7 572,157 + MPMX19_05840 0.63 +0.3 572,157 + MPMX19_05840 0.63 +1.0 572,157 + MPMX19_05840 0.63 -0.7 572,158 - MPMX19_05840 0.63 -0.7 572,158 - MPMX19_05840 0.63 +0.6 572,158 - MPMX19_05840 0.63 -1.6 572,158 - MPMX19_05840 0.63 +0.1 572,158 - MPMX19_05840 0.63 -2.3 572,158 - MPMX19_05840 0.63 +1.2 572,158 - MPMX19_05840 0.63 -0.9 572,158 - MPMX19_05840 0.63 +1.0 572,158 - MPMX19_05840 0.63 -0.2 572,158 - MPMX19_05840 0.63 -0.4 572,158 - MPMX19_05840 0.63 +0.4 572,158 - MPMX19_05840 0.63 -0.3 572,220 + MPMX19_05840 0.67 -1.5 572,221 - MPMX19_05840 0.67 +0.5 572,221 - MPMX19_05840 0.67 +0.6 572,221 - MPMX19_05840 0.67 -0.3 572,221 - MPMX19_05840 0.67 -0.3 572,221 - MPMX19_05840 0.67 -1.5 572,221 - MPMX19_05840 0.67 -0.2 572,246 + MPMX19_05840 0.69 +1.3 572,516 - MPMX19_05840 0.87 +0.1 572,516 - MPMX19_05840 0.87 -0.7 572,517 + MPMX19_05840 0.87 -1.8 572,517 + MPMX19_05840 0.87 +1.0 572,518 - MPMX19_05840 0.87 -0.5 572,740 + -1.3 572,740 + -0.8 572,741 - -0.9 572,745 + -1.1 572,745 + +0.2 572,745 + -0.9 572,745 + -0.5 572,746 - -0.5 572,746 - -0.6 572,746 - -0.8 572,785 + -0.4 572,785 + -1.9 572,785 + +0.8 572,785 + -0.4 572,785 + -1.0 572,785 + +0.0 572,785 + +1.9 572,786 - -0.7 572,786 - +0.3 572,786 - -0.4 572,786 - -0.7 572,786 - -1.7 573,223 - MPMX19_05841 0.19 +0.9 573,225 + MPMX19_05841 0.20 -2.3 573,226 - MPMX19_05841 0.20 +0.6 573,226 - MPMX19_05841 0.20 +0.1 573,237 + MPMX19_05841 0.20 -0.7 573,238 - MPMX19_05841 0.20 -0.4 573,330 + MPMX19_05841 0.25 +0.3 573,330 + MPMX19_05841 0.25 -1.4 573,330 + MPMX19_05841 0.25 -0.9 573,331 - MPMX19_05841 0.25 -0.2 573,331 - MPMX19_05841 0.25 -1.0 573,331 - MPMX19_05841 0.25 -0.7 573,331 - MPMX19_05841 0.25 -0.2 573,651 + MPMX19_05841 0.42 -0.5 573,652 - MPMX19_05841 0.42 -0.7 573,652 - MPMX19_05841 0.42 -0.1
Or see this region's nucleotide sequence