Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05731 and MPMX19_05732 are separated by 43 nucleotides MPMX19_05732 and MPMX19_05733 overlap by 4 nucleotides MPMX19_05733 and MPMX19_05734 are separated by 5 nucleotides
MPMX19_05731: MPMX19_05731 - hypothetical protein, at 449,226 to 450,509
_05731
MPMX19_05732: MPMX19_05732 - hypothetical protein, at 450,553 to 451,422
_05732
MPMX19_05733: MPMX19_05733 - Biopolymer transport protein ExbD, at 451,419 to 451,847
_05733
MPMX19_05734: MPMX19_05734 - Tol-Pal system protein TolQ, at 451,853 to 452,806
_05734
Position (kb) 450
451
452 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 449.737 kb on + strand, within MPMX19_05731 at 449.737 kb on + strand, within MPMX19_05731 at 449.738 kb on - strand, within MPMX19_05731 at 449.738 kb on - strand, within MPMX19_05731 at 449.738 kb on - strand, within MPMX19_05731 at 449.738 kb on - strand, within MPMX19_05731 at 449.738 kb on - strand, within MPMX19_05731 at 449.738 kb on - strand, within MPMX19_05731 at 450.470 kb on - strand at 450.786 kb on - strand, within MPMX19_05732 at 451.465 kb on + strand, within MPMX19_05733 at 451.465 kb on + strand, within MPMX19_05733 at 451.510 kb on + strand, within MPMX19_05733 at 451.855 kb on - strand at 451.855 kb on - strand at 452.037 kb on + strand, within MPMX19_05734 at 452.037 kb on + strand, within MPMX19_05734 at 452.037 kb on + strand, within MPMX19_05734 at 452.037 kb on + strand, within MPMX19_05734 at 452.037 kb on + strand, within MPMX19_05734 at 452.037 kb on + strand, within MPMX19_05734 at 452.037 kb on + strand, within MPMX19_05734 at 452.037 kb on + strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 449,737 + MPMX19_05731 0.40 +0.3 449,737 + MPMX19_05731 0.40 +0.1 449,738 - MPMX19_05731 0.40 -0.4 449,738 - MPMX19_05731 0.40 -0.8 449,738 - MPMX19_05731 0.40 +0.3 449,738 - MPMX19_05731 0.40 +1.3 449,738 - MPMX19_05731 0.40 -0.5 449,738 - MPMX19_05731 0.40 -0.3 450,470 - +0.3 450,786 - MPMX19_05732 0.27 -0.6 451,465 + MPMX19_05733 0.11 +1.0 451,465 + MPMX19_05733 0.11 +0.7 451,510 + MPMX19_05733 0.21 -1.4 451,855 - +0.4 451,855 - -1.2 452,037 + MPMX19_05734 0.19 -0.4 452,037 + MPMX19_05734 0.19 -0.0 452,037 + MPMX19_05734 0.19 +0.0 452,037 + MPMX19_05734 0.19 -0.0 452,037 + MPMX19_05734 0.19 -0.6 452,037 + MPMX19_05734 0.19 +0.5 452,037 + MPMX19_05734 0.19 -0.7 452,037 + MPMX19_05734 0.19 -0.6 452,038 - MPMX19_05734 0.19 -1.2 452,038 - MPMX19_05734 0.19 -1.6 452,038 - MPMX19_05734 0.19 -1.6 452,038 - MPMX19_05734 0.19 -0.2 452,038 - MPMX19_05734 0.19 -1.4 452,038 - MPMX19_05734 0.19 +0.1 452,038 - MPMX19_05734 0.19 +0.0 452,038 - MPMX19_05734 0.19 -0.8 452,038 - MPMX19_05734 0.19 +0.9 452,038 - MPMX19_05734 0.19 -3.0 452,038 - MPMX19_05734 0.19 +0.7
Or see this region's nucleotide sequence