Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05507

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05505 and MPMX19_05506 are separated by 60 nucleotidesMPMX19_05506 and MPMX19_05507 are separated by 3 nucleotidesMPMX19_05507 and MPMX19_05508 are separated by 53 nucleotides MPMX19_05505: MPMX19_05505 - Leucine-responsive regulatory protein, at 209,799 to 210,380 _05505 MPMX19_05506: MPMX19_05506 - Leucine efflux protein, at 210,441 to 211,085 _05506 MPMX19_05507: MPMX19_05507 - Transcriptional regulatory protein DegU, at 211,089 to 211,820 _05507 MPMX19_05508: MPMX19_05508 - Sensor histidine kinase RcsC, at 211,874 to 215,416 _05508 Position (kb) 211 212Strain fitness (log2 ratio) -2 -1 0 1at 210.145 kb on + strand, within MPMX19_05505at 210.145 kb on + strand, within MPMX19_05505at 210.146 kb on - strand, within MPMX19_05505at 210.146 kb on - strand, within MPMX19_05505at 210.315 kb on + strand, within MPMX19_05505at 210.316 kb on - strand, within MPMX19_05505at 210.363 kb on + strandat 210.363 kb on + strandat 210.363 kb on + strandat 210.404 kb on + strandat 210.405 kb on - strandat 210.405 kb on - strandat 210.405 kb on - strandat 210.405 kb on - strandat 210.440 kb on + strandat 210.440 kb on + strandat 210.440 kb on + strandat 210.440 kb on + strandat 210.440 kb on + strandat 210.440 kb on + strandat 210.440 kb on + strandat 210.440 kb on + strandat 210.440 kb on + strandat 210.441 kb on - strandat 210.441 kb on - strandat 210.441 kb on - strandat 210.441 kb on - strandat 210.483 kb on + strandat 210.483 kb on + strandat 210.483 kb on + strandat 210.483 kb on + strandat 210.484 kb on - strandat 210.678 kb on + strand, within MPMX19_05506at 210.678 kb on + strand, within MPMX19_05506at 210.678 kb on + strand, within MPMX19_05506at 210.678 kb on + strand, within MPMX19_05506at 210.678 kb on + strand, within MPMX19_05506at 210.679 kb on - strand, within MPMX19_05506at 210.679 kb on - strand, within MPMX19_05506at 210.679 kb on - strand, within MPMX19_05506at 210.679 kb on - strand, within MPMX19_05506at 210.679 kb on - strand, within MPMX19_05506at 210.679 kb on - strand, within MPMX19_05506at 210.685 kb on + strand, within MPMX19_05506at 210.685 kb on + strand, within MPMX19_05506at 210.685 kb on + strand, within MPMX19_05506at 210.686 kb on - strand, within MPMX19_05506at 210.780 kb on + strand, within MPMX19_05506at 210.780 kb on + strand, within MPMX19_05506at 210.780 kb on + strand, within MPMX19_05506at 210.780 kb on + strand, within MPMX19_05506at 210.781 kb on - strand, within MPMX19_05506at 210.781 kb on - strand, within MPMX19_05506at 210.954 kb on + strand, within MPMX19_05506at 210.954 kb on + strand, within MPMX19_05506at 210.954 kb on + strand, within MPMX19_05506at 210.954 kb on + strand, within MPMX19_05506at 210.954 kb on + strand, within MPMX19_05506at 210.954 kb on + strand, within MPMX19_05506at 210.954 kb on + strand, within MPMX19_05506at 210.954 kb on + strand, within MPMX19_05506at 210.954 kb on + strand, within MPMX19_05506at 210.954 kb on + strand, within MPMX19_05506at 210.954 kb on + strand, within MPMX19_05506at 210.954 kb on + strand, within MPMX19_05506at 210.954 kb on + strand, within MPMX19_05506at 210.955 kb on - strand, within MPMX19_05506at 210.955 kb on - strand, within MPMX19_05506at 210.955 kb on - strand, within MPMX19_05506at 210.955 kb on - strand, within MPMX19_05506at 210.955 kb on - strand, within MPMX19_05506at 210.955 kb on - strand, within MPMX19_05506at 210.955 kb on - strand, within MPMX19_05506at 210.955 kb on - strand, within MPMX19_05506at 210.955 kb on - strand, within MPMX19_05506at 210.955 kb on - strand, within MPMX19_05506at 210.955 kb on - strand, within MPMX19_05506at 210.955 kb on - strand, within MPMX19_05506at 210.955 kb on - strand, within MPMX19_05506at 211.083 kb on + strandat 211.083 kb on + strandat 211.083 kb on + strandat 211.083 kb on + strandat 211.084 kb on - strandat 211.084 kb on - strandat 211.084 kb on - strandat 211.084 kb on - strandat 211.084 kb on - strandat 211.084 kb on - strandat 211.084 kb on - strandat 211.090 kb on + strandat 211.090 kb on + strandat 211.090 kb on + strandat 211.091 kb on - strandat 211.091 kb on - strandat 211.091 kb on - strandat 211.091 kb on - strandat 211.426 kb on + strand, within MPMX19_05507at 211.426 kb on + strand, within MPMX19_05507at 211.426 kb on + strand, within MPMX19_05507at 211.426 kb on + strand, within MPMX19_05507at 211.426 kb on + strand, within MPMX19_05507at 211.426 kb on + strand, within MPMX19_05507at 211.426 kb on + strand, within MPMX19_05507at 211.426 kb on + strand, within MPMX19_05507at 211.426 kb on + strand, within MPMX19_05507at 211.426 kb on + strand, within MPMX19_05507at 211.427 kb on - strand, within MPMX19_05507at 211.427 kb on - strand, within MPMX19_05507at 211.427 kb on - strand, within MPMX19_05507at 211.427 kb on - strand, within MPMX19_05507at 211.427 kb on - strand, within MPMX19_05507at 211.427 kb on - strand, within MPMX19_05507at 211.427 kb on - strand, within MPMX19_05507at 211.427 kb on - strand, within MPMX19_05507at 211.441 kb on + strand, within MPMX19_05507at 211.441 kb on + strand, within MPMX19_05507at 211.441 kb on + strand, within MPMX19_05507at 211.441 kb on + strand, within MPMX19_05507at 211.442 kb on - strand, within MPMX19_05507at 211.442 kb on - strand, within MPMX19_05507at 211.442 kb on - strand, within MPMX19_05507at 211.442 kb on - strand, within MPMX19_05507at 211.683 kb on + strand, within MPMX19_05507at 211.875 kb on + strandat 211.953 kb on + strandat 211.953 kb on + strandat 211.953 kb on + strandat 211.954 kb on - strandat 211.954 kb on - strandat 211.954 kb on - strandat 211.954 kb on - strandat 211.954 kb on - strandat 211.954 kb on - strandat 211.954 kb on - strandat 212.100 kb on + strandat 212.100 kb on + strandat 212.622 kb on + strand, within MPMX19_05508at 212.623 kb on - strand, within MPMX19_05508at 212.705 kb on + strand, within MPMX19_05508at 212.705 kb on + strand, within MPMX19_05508at 212.705 kb on + strand, within MPMX19_05508at 212.705 kb on + strand, within MPMX19_05508at 212.705 kb on + strand, within MPMX19_05508at 212.706 kb on - strand, within MPMX19_05508at 212.706 kb on - strand, within MPMX19_05508at 212.706 kb on - strand, within MPMX19_05508at 212.706 kb on - strand, within MPMX19_05508at 212.706 kb on - strand, within MPMX19_05508

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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210,145 + MPMX19_05505 0.59 -1.5
210,145 + MPMX19_05505 0.59 -1.7
210,146 - MPMX19_05505 0.60 +0.7
210,146 - MPMX19_05505 0.60 -0.3
210,315 + MPMX19_05505 0.89 +0.3
210,316 - MPMX19_05505 0.89 +0.3
210,363 + -0.3
210,363 + +1.1
210,363 + -1.1
210,404 + -1.8
210,405 - -0.6
210,405 - +0.2
210,405 - -0.2
210,405 - -0.4
210,440 + +1.0
210,440 + -1.0
210,440 + -0.8
210,440 + -1.3
210,440 + -0.8
210,440 + +0.7
210,440 + -0.6
210,440 + -1.2
210,440 + -0.4
210,441 - +0.0
210,441 - +0.1
210,441 - -0.4
210,441 - +0.1
210,483 + +1.0
210,483 + -0.0
210,483 + -0.4
210,483 + -2.1
210,484 - -2.2
210,678 + MPMX19_05506 0.37 -0.9
210,678 + MPMX19_05506 0.37 +0.1
210,678 + MPMX19_05506 0.37 +0.3
210,678 + MPMX19_05506 0.37 +0.7
210,678 + MPMX19_05506 0.37 -1.1
210,679 - MPMX19_05506 0.37 +0.4
210,679 - MPMX19_05506 0.37 +1.3
210,679 - MPMX19_05506 0.37 -2.6
210,679 - MPMX19_05506 0.37 -2.0
210,679 - MPMX19_05506 0.37 +0.8
210,679 - MPMX19_05506 0.37 -0.9
210,685 + MPMX19_05506 0.38 -1.6
210,685 + MPMX19_05506 0.38 -1.2
210,685 + MPMX19_05506 0.38 -0.9
210,686 - MPMX19_05506 0.38 +0.7
210,780 + MPMX19_05506 0.53 +1.0
210,780 + MPMX19_05506 0.53 +0.1
210,780 + MPMX19_05506 0.53 -0.1
210,780 + MPMX19_05506 0.53 -1.0
210,781 - MPMX19_05506 0.53 -2.0
210,781 - MPMX19_05506 0.53 -0.9
210,954 + MPMX19_05506 0.80 -1.0
210,954 + MPMX19_05506 0.80 -1.8
210,954 + MPMX19_05506 0.80 +1.0
210,954 + MPMX19_05506 0.80 +0.1
210,954 + MPMX19_05506 0.80 -0.4
210,954 + MPMX19_05506 0.80 -1.2
210,954 + MPMX19_05506 0.80 -0.6
210,954 + MPMX19_05506 0.80 -1.3
210,954 + MPMX19_05506 0.80 -0.9
210,954 + MPMX19_05506 0.80 -0.9
210,954 + MPMX19_05506 0.80 -0.0
210,954 + MPMX19_05506 0.80 +0.3
210,954 + MPMX19_05506 0.80 +0.6
210,955 - MPMX19_05506 0.80 -0.4
210,955 - MPMX19_05506 0.80 -0.2
210,955 - MPMX19_05506 0.80 +0.1
210,955 - MPMX19_05506 0.80 +0.2
210,955 - MPMX19_05506 0.80 -1.5
210,955 - MPMX19_05506 0.80 +0.7
210,955 - MPMX19_05506 0.80 -0.9
210,955 - MPMX19_05506 0.80 -2.1
210,955 - MPMX19_05506 0.80 +0.4
210,955 - MPMX19_05506 0.80 +0.2
210,955 - MPMX19_05506 0.80 +0.8
210,955 - MPMX19_05506 0.80 -1.7
210,955 - MPMX19_05506 0.80 -0.5
211,083 + -0.2
211,083 + -0.1
211,083 + +0.2
211,083 + -0.9
211,084 - +0.6
211,084 - -0.4
211,084 - -0.9
211,084 - +0.4
211,084 - +0.1
211,084 - -0.6
211,084 - -0.9
211,090 + -1.0
211,090 + +0.4
211,090 + +0.1
211,091 - -0.2
211,091 - -0.4
211,091 - +0.9
211,091 - +1.2
211,426 + MPMX19_05507 0.46 -1.9
211,426 + MPMX19_05507 0.46 -0.6
211,426 + MPMX19_05507 0.46 +0.1
211,426 + MPMX19_05507 0.46 -0.2
211,426 + MPMX19_05507 0.46 -1.1
211,426 + MPMX19_05507 0.46 -1.6
211,426 + MPMX19_05507 0.46 -0.5
211,426 + MPMX19_05507 0.46 -1.4
211,426 + MPMX19_05507 0.46 -0.1
211,426 + MPMX19_05507 0.46 +0.4
211,427 - MPMX19_05507 0.46 +0.9
211,427 - MPMX19_05507 0.46 -1.0
211,427 - MPMX19_05507 0.46 -0.0
211,427 - MPMX19_05507 0.46 -0.6
211,427 - MPMX19_05507 0.46 -1.1
211,427 - MPMX19_05507 0.46 -0.9
211,427 - MPMX19_05507 0.46 -2.2
211,427 - MPMX19_05507 0.46 -0.6
211,441 + MPMX19_05507 0.48 +0.6
211,441 + MPMX19_05507 0.48 +1.0
211,441 + MPMX19_05507 0.48 +0.1
211,441 + MPMX19_05507 0.48 -1.4
211,442 - MPMX19_05507 0.48 -1.3
211,442 - MPMX19_05507 0.48 -1.1
211,442 - MPMX19_05507 0.48 -2.0
211,442 - MPMX19_05507 0.48 +0.1
211,683 + MPMX19_05507 0.81 -1.1
211,875 + -2.6
211,953 + -2.4
211,953 + +0.4
211,953 + -0.7
211,954 - +0.5
211,954 - -0.3
211,954 - -0.2
211,954 - -0.6
211,954 - -1.0
211,954 - +0.2
211,954 - -0.8
212,100 + -0.5
212,100 + +0.3
212,622 + MPMX19_05508 0.21 -0.5
212,623 - MPMX19_05508 0.21 +0.5
212,705 + MPMX19_05508 0.23 -1.5
212,705 + MPMX19_05508 0.23 +0.1
212,705 + MPMX19_05508 0.23 -0.1
212,705 + MPMX19_05508 0.23 -1.8
212,705 + MPMX19_05508 0.23 +0.7
212,706 - MPMX19_05508 0.23 -1.7
212,706 - MPMX19_05508 0.23 -1.2
212,706 - MPMX19_05508 0.23 +0.3
212,706 - MPMX19_05508 0.23 -0.5
212,706 - MPMX19_05508 0.23 +1.0

Or see this region's nucleotide sequence