Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05301

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05300 and MPMX19_05301 are separated by 58 nucleotidesMPMX19_05301 and MPMX19_05302 overlap by 4 nucleotides MPMX19_05300: MPMX19_05300 - Signal transduction histidine-protein kinase AtoS, at 835,117 to 836,472 _05300 MPMX19_05301: MPMX19_05301 - Protein AaeX, at 836,531 to 836,740 _05301 MPMX19_05302: MPMX19_05302 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 836,737 to 838,836 _05302 Position (kb) 836 837Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 835.765 kb on + strand, within MPMX19_05300at 835.765 kb on + strand, within MPMX19_05300at 835.765 kb on + strand, within MPMX19_05300at 835.765 kb on + strand, within MPMX19_05300at 835.765 kb on + strand, within MPMX19_05300at 835.765 kb on + strand, within MPMX19_05300at 835.765 kb on + strand, within MPMX19_05300at 835.766 kb on - strand, within MPMX19_05300at 835.766 kb on - strand, within MPMX19_05300at 835.770 kb on - strand, within MPMX19_05300at 835.790 kb on + strand, within MPMX19_05300at 835.791 kb on - strand, within MPMX19_05300at 835.817 kb on + strand, within MPMX19_05300at 835.817 kb on + strand, within MPMX19_05300at 836.021 kb on + strand, within MPMX19_05300at 836.022 kb on - strand, within MPMX19_05300at 836.369 kb on + strandat 836.369 kb on + strandat 836.369 kb on + strandat 836.369 kb on + strandat 836.369 kb on + strandat 836.370 kb on - strandat 836.370 kb on - strandat 836.370 kb on - strandat 836.370 kb on - strandat 836.370 kb on - strandat 836.484 kb on + strandat 836.484 kb on + strandat 836.484 kb on + strandat 836.484 kb on + strandat 836.484 kb on + strandat 836.484 kb on + strandat 836.484 kb on + strandat 836.484 kb on + strandat 836.484 kb on + strandat 836.484 kb on + strandat 836.485 kb on - strandat 836.485 kb on - strandat 836.485 kb on - strandat 836.485 kb on - strandat 836.485 kb on - strandat 836.485 kb on - strandat 836.485 kb on - strandat 836.485 kb on - strandat 836.485 kb on - strandat 836.485 kb on - strandat 836.485 kb on - strandat 836.485 kb on - strandat 836.485 kb on - strandat 836.583 kb on + strand, within MPMX19_05301at 836.583 kb on + strand, within MPMX19_05301at 836.583 kb on + strand, within MPMX19_05301at 836.583 kb on + strand, within MPMX19_05301at 836.583 kb on + strand, within MPMX19_05301at 836.583 kb on + strand, within MPMX19_05301at 836.583 kb on + strand, within MPMX19_05301at 836.583 kb on + strand, within MPMX19_05301at 836.583 kb on + strand, within MPMX19_05301at 836.583 kb on + strand, within MPMX19_05301at 836.583 kb on + strand, within MPMX19_05301at 836.583 kb on + strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.584 kb on - strand, within MPMX19_05301at 836.625 kb on + strand, within MPMX19_05301at 836.625 kb on + strand, within MPMX19_05301at 836.625 kb on + strand, within MPMX19_05301at 836.625 kb on + strand, within MPMX19_05301at 836.626 kb on - strand, within MPMX19_05301at 836.718 kb on + strand, within MPMX19_05301at 836.718 kb on + strand, within MPMX19_05301at 836.718 kb on + strand, within MPMX19_05301at 836.718 kb on + strand, within MPMX19_05301at 836.718 kb on + strand, within MPMX19_05301at 836.718 kb on + strand, within MPMX19_05301at 836.719 kb on - strand, within MPMX19_05301at 836.719 kb on - strand, within MPMX19_05301at 836.719 kb on - strand, within MPMX19_05301at 836.890 kb on + strandat 836.890 kb on + strandat 836.891 kb on - strandat 836.891 kb on - strandat 836.891 kb on - strandat 837.527 kb on + strand, within MPMX19_05302at 837.527 kb on + strand, within MPMX19_05302at 837.527 kb on + strand, within MPMX19_05302at 837.527 kb on + strand, within MPMX19_05302at 837.527 kb on + strand, within MPMX19_05302at 837.527 kb on + strand, within MPMX19_05302at 837.527 kb on + strand, within MPMX19_05302at 837.527 kb on + strand, within MPMX19_05302at 837.527 kb on + strand, within MPMX19_05302at 837.527 kb on + strand, within MPMX19_05302at 837.527 kb on + strand, within MPMX19_05302at 837.527 kb on + strand, within MPMX19_05302at 837.528 kb on - strand, within MPMX19_05302at 837.528 kb on - strand, within MPMX19_05302at 837.528 kb on - strand, within MPMX19_05302at 837.528 kb on - strand, within MPMX19_05302at 837.528 kb on - strand, within MPMX19_05302at 837.528 kb on - strand, within MPMX19_05302at 837.528 kb on - strand, within MPMX19_05302at 837.528 kb on - strand, within MPMX19_05302at 837.558 kb on + strand, within MPMX19_05302at 837.558 kb on + strand, within MPMX19_05302at 837.558 kb on + strand, within MPMX19_05302at 837.558 kb on + strand, within MPMX19_05302at 837.558 kb on + strand, within MPMX19_05302at 837.558 kb on + strand, within MPMX19_05302at 837.558 kb on + strand, within MPMX19_05302at 837.558 kb on + strand, within MPMX19_05302at 837.558 kb on + strand, within MPMX19_05302at 837.558 kb on + strand, within MPMX19_05302at 837.558 kb on + strand, within MPMX19_05302at 837.558 kb on + strand, within MPMX19_05302at 837.559 kb on - strand, within MPMX19_05302at 837.559 kb on - strand, within MPMX19_05302at 837.559 kb on - strand, within MPMX19_05302at 837.559 kb on - strand, within MPMX19_05302at 837.559 kb on - strand, within MPMX19_05302at 837.559 kb on - strand, within MPMX19_05302at 837.559 kb on - strand, within MPMX19_05302at 837.559 kb on - strand, within MPMX19_05302at 837.559 kb on - strand, within MPMX19_05302at 837.560 kb on + strand, within MPMX19_05302at 837.560 kb on + strand, within MPMX19_05302at 837.560 kb on + strand, within MPMX19_05302at 837.560 kb on + strand, within MPMX19_05302at 837.561 kb on - strand, within MPMX19_05302at 837.561 kb on - strand, within MPMX19_05302at 837.561 kb on - strand, within MPMX19_05302at 837.561 kb on - strand, within MPMX19_05302at 837.561 kb on - strand, within MPMX19_05302at 837.561 kb on - strand, within MPMX19_05302at 837.561 kb on - strand, within MPMX19_05302at 837.737 kb on + strand, within MPMX19_05302

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
remove
835,765 + MPMX19_05300 0.48 +0.2
835,765 + MPMX19_05300 0.48 -0.3
835,765 + MPMX19_05300 0.48 -0.5
835,765 + MPMX19_05300 0.48 -1.9
835,765 + MPMX19_05300 0.48 +0.6
835,765 + MPMX19_05300 0.48 +0.1
835,765 + MPMX19_05300 0.48 +0.5
835,766 - MPMX19_05300 0.48 -1.1
835,766 - MPMX19_05300 0.48 -0.1
835,770 - MPMX19_05300 0.48 +0.2
835,790 + MPMX19_05300 0.50 -1.3
835,791 - MPMX19_05300 0.50 -1.5
835,817 + MPMX19_05300 0.52 +1.5
835,817 + MPMX19_05300 0.52 +0.5
836,021 + MPMX19_05300 0.67 -1.1
836,022 - MPMX19_05300 0.67 -0.9
836,369 + -1.0
836,369 + +0.2
836,369 + -0.6
836,369 + +0.8
836,369 + +0.2
836,370 - -0.7
836,370 - -0.4
836,370 - -0.5
836,370 - -1.0
836,370 - -0.3
836,484 + -0.5
836,484 + -1.3
836,484 + +0.9
836,484 + +1.5
836,484 + +0.2
836,484 + -0.3
836,484 + -0.3
836,484 + -0.1
836,484 + -0.9
836,484 + +0.5
836,485 - -0.5
836,485 - -0.9
836,485 - -0.2
836,485 - +0.1
836,485 - -0.3
836,485 - -1.0
836,485 - -0.3
836,485 - +0.8
836,485 - -0.7
836,485 - -0.2
836,485 - -1.1
836,485 - +0.1
836,485 - -0.1
836,583 + MPMX19_05301 0.25 -1.9
836,583 + MPMX19_05301 0.25 -0.4
836,583 + MPMX19_05301 0.25 -0.7
836,583 + MPMX19_05301 0.25 -1.1
836,583 + MPMX19_05301 0.25 -1.5
836,583 + MPMX19_05301 0.25 +1.4
836,583 + MPMX19_05301 0.25 +0.3
836,583 + MPMX19_05301 0.25 +1.2
836,583 + MPMX19_05301 0.25 -0.8
836,583 + MPMX19_05301 0.25 -2.1
836,583 + MPMX19_05301 0.25 -0.4
836,583 + MPMX19_05301 0.25 -0.3
836,584 - MPMX19_05301 0.25 +0.1
836,584 - MPMX19_05301 0.25 -0.2
836,584 - MPMX19_05301 0.25 -0.5
836,584 - MPMX19_05301 0.25 -0.7
836,584 - MPMX19_05301 0.25 -0.0
836,584 - MPMX19_05301 0.25 -0.0
836,584 - MPMX19_05301 0.25 -1.1
836,584 - MPMX19_05301 0.25 +1.7
836,584 - MPMX19_05301 0.25 -0.1
836,584 - MPMX19_05301 0.25 +0.6
836,584 - MPMX19_05301 0.25 +0.9
836,584 - MPMX19_05301 0.25 -0.1
836,584 - MPMX19_05301 0.25 -0.2
836,625 + MPMX19_05301 0.45 +0.0
836,625 + MPMX19_05301 0.45 -1.1
836,625 + MPMX19_05301 0.45 +0.2
836,625 + MPMX19_05301 0.45 +0.1
836,626 - MPMX19_05301 0.45 -0.5
836,718 + MPMX19_05301 0.89 -0.6
836,718 + MPMX19_05301 0.89 +1.2
836,718 + MPMX19_05301 0.89 +1.1
836,718 + MPMX19_05301 0.89 +0.5
836,718 + MPMX19_05301 0.89 -0.5
836,718 + MPMX19_05301 0.89 -0.2
836,719 - MPMX19_05301 0.90 +0.2
836,719 - MPMX19_05301 0.90 +0.7
836,719 - MPMX19_05301 0.90 +0.0
836,890 + -2.0
836,890 + -0.9
836,891 - -0.7
836,891 - -1.5
836,891 - -0.9
837,527 + MPMX19_05302 0.38 -0.1
837,527 + MPMX19_05302 0.38 +0.5
837,527 + MPMX19_05302 0.38 -1.2
837,527 + MPMX19_05302 0.38 -1.1
837,527 + MPMX19_05302 0.38 +0.1
837,527 + MPMX19_05302 0.38 -0.3
837,527 + MPMX19_05302 0.38 +0.4
837,527 + MPMX19_05302 0.38 -0.0
837,527 + MPMX19_05302 0.38 -0.7
837,527 + MPMX19_05302 0.38 -0.5
837,527 + MPMX19_05302 0.38 -1.7
837,527 + MPMX19_05302 0.38 -1.0
837,528 - MPMX19_05302 0.38 -0.9
837,528 - MPMX19_05302 0.38 -1.3
837,528 - MPMX19_05302 0.38 +0.2
837,528 - MPMX19_05302 0.38 +0.7
837,528 - MPMX19_05302 0.38 -0.4
837,528 - MPMX19_05302 0.38 -1.9
837,528 - MPMX19_05302 0.38 -0.5
837,528 - MPMX19_05302 0.38 +0.3
837,558 + MPMX19_05302 0.39 -0.2
837,558 + MPMX19_05302 0.39 -1.7
837,558 + MPMX19_05302 0.39 -1.7
837,558 + MPMX19_05302 0.39 -0.6
837,558 + MPMX19_05302 0.39 -0.9
837,558 + MPMX19_05302 0.39 -0.3
837,558 + MPMX19_05302 0.39 -0.2
837,558 + MPMX19_05302 0.39 -1.2
837,558 + MPMX19_05302 0.39 +1.2
837,558 + MPMX19_05302 0.39 -0.3
837,558 + MPMX19_05302 0.39 +2.5
837,558 + MPMX19_05302 0.39 -2.0
837,559 - MPMX19_05302 0.39 -0.9
837,559 - MPMX19_05302 0.39 +0.0
837,559 - MPMX19_05302 0.39 +0.2
837,559 - MPMX19_05302 0.39 -0.7
837,559 - MPMX19_05302 0.39 +0.8
837,559 - MPMX19_05302 0.39 -1.0
837,559 - MPMX19_05302 0.39 +0.4
837,559 - MPMX19_05302 0.39 -2.0
837,559 - MPMX19_05302 0.39 -0.4
837,560 + MPMX19_05302 0.39 -0.5
837,560 + MPMX19_05302 0.39 -0.0
837,560 + MPMX19_05302 0.39 -2.5
837,560 + MPMX19_05302 0.39 -0.0
837,561 - MPMX19_05302 0.39 -0.8
837,561 - MPMX19_05302 0.39 +0.7
837,561 - MPMX19_05302 0.39 -1.9
837,561 - MPMX19_05302 0.39 -2.9
837,561 - MPMX19_05302 0.39 +0.1
837,561 - MPMX19_05302 0.39 -1.3
837,561 - MPMX19_05302 0.39 -2.6
837,737 + MPMX19_05302 0.48 -0.1

Or see this region's nucleotide sequence