Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05203 and MPMX19_05204 overlap by 4 nucleotides MPMX19_05204 and MPMX19_05205 are separated by 4 nucleotides MPMX19_05205 and MPMX19_05206 are separated by 482 nucleotides
MPMX19_05203: MPMX19_05203 - hypothetical protein, at 707,604 to 708,515
_05203
MPMX19_05204: MPMX19_05204 - Vitamin B12 import ATP-binding protein BtuD, at 708,512 to 709,348
_05204
MPMX19_05205: MPMX19_05205 - hypothetical protein, at 709,353 to 710,384
_05205
MPMX19_05206: MPMX19_05206 - Toxin RTX-I translocation ATP-binding protein, at 710,867 to 713,029
_05206
Position (kb) 709
710
711 Strain fitness (log2 ratio) -2
-1
0
1 at 708.442 kb on + strand at 708.442 kb on + strand at 708.442 kb on + strand at 708.442 kb on + strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.622 kb on - strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.228 kb on - strand, within MPMX19_05204 at 709.228 kb on - strand, within MPMX19_05204 at 709.228 kb on - strand, within MPMX19_05204 at 709.228 kb on - strand, within MPMX19_05204 at 709.228 kb on - strand, within MPMX19_05204 at 709.228 kb on - strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.332 kb on + strand at 709.333 kb on - strand at 709.390 kb on + strand at 709.390 kb on + strand at 709.390 kb on + strand at 709.390 kb on + strand at 709.391 kb on - strand at 709.391 kb on - strand at 709.391 kb on - strand at 709.391 kb on - strand at 709.391 kb on - strand at 709.628 kb on - strand, within MPMX19_05205 at 709.628 kb on - strand, within MPMX19_05205 at 709.628 kb on - strand, within MPMX19_05205 at 709.705 kb on + strand, within MPMX19_05205 at 709.705 kb on + strand, within MPMX19_05205 at 709.705 kb on + strand, within MPMX19_05205 at 709.706 kb on - strand, within MPMX19_05205 at 709.706 kb on - strand, within MPMX19_05205 at 709.706 kb on - strand, within MPMX19_05205 at 709.751 kb on - strand, within MPMX19_05205 at 709.800 kb on + strand, within MPMX19_05205 at 710.242 kb on + strand, within MPMX19_05205 at 710.254 kb on + strand, within MPMX19_05205 at 710.549 kb on + strand at 710.644 kb on + strand at 710.644 kb on + strand at 710.648 kb on + strand at 710.649 kb on - strand at 710.674 kb on + strand at 710.920 kb on + strand at 710.920 kb on + strand at 710.920 kb on + strand at 710.920 kb on + strand at 710.920 kb on + strand at 710.920 kb on + strand at 710.921 kb on - strand at 710.921 kb on - strand at 710.921 kb on - strand at 711.125 kb on + strand, within MPMX19_05206 at 711.125 kb on + strand, within MPMX19_05206 at 711.125 kb on + strand, within MPMX19_05206 at 711.125 kb on + strand, within MPMX19_05206 at 711.126 kb on - strand, within MPMX19_05206 at 711.126 kb on - strand, within MPMX19_05206 at 711.320 kb on + strand, within MPMX19_05206 at 711.320 kb on + strand, within MPMX19_05206 at 711.320 kb on + strand, within MPMX19_05206
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 708,442 + -0.1 708,442 + -1.6 708,442 + -0.3 708,442 + -0.3 708,443 - +0.3 708,443 - -1.7 708,443 - -0.4 708,443 - +0.0 708,443 - +0.9 708,443 - -1.0 708,443 - +0.1 708,622 - MPMX19_05204 0.13 -0.7 709,191 + MPMX19_05204 0.81 -0.1 709,191 + MPMX19_05204 0.81 -0.5 709,191 + MPMX19_05204 0.81 -1.0 709,191 + MPMX19_05204 0.81 -1.0 709,191 + MPMX19_05204 0.81 +0.1 709,191 + MPMX19_05204 0.81 +0.3 709,191 + MPMX19_05204 0.81 -2.0 709,191 + MPMX19_05204 0.81 +1.5 709,191 + MPMX19_05204 0.81 +0.5 709,191 + MPMX19_05204 0.81 +0.4 709,191 + MPMX19_05204 0.81 +0.1 709,191 + MPMX19_05204 0.81 -1.3 709,191 + MPMX19_05204 0.81 -1.7 709,191 + MPMX19_05204 0.81 +0.2 709,191 + MPMX19_05204 0.81 -0.5 709,191 + MPMX19_05204 0.81 +0.7 709,228 - MPMX19_05204 0.86 +0.5 709,228 - MPMX19_05204 0.86 -0.6 709,228 - MPMX19_05204 0.86 -0.2 709,228 - MPMX19_05204 0.86 -0.9 709,228 - MPMX19_05204 0.86 -1.0 709,228 - MPMX19_05204 0.86 -0.4 709,260 + MPMX19_05204 0.89 -0.1 709,260 + MPMX19_05204 0.89 +0.0 709,260 + MPMX19_05204 0.89 -0.5 709,260 + MPMX19_05204 0.89 -0.1 709,260 + MPMX19_05204 0.89 +0.3 709,260 + MPMX19_05204 0.89 +1.1 709,260 + MPMX19_05204 0.89 +0.8 709,260 + MPMX19_05204 0.89 -0.9 709,260 + MPMX19_05204 0.89 -0.3 709,260 + MPMX19_05204 0.89 -1.0 709,260 + MPMX19_05204 0.89 -0.5 709,260 + MPMX19_05204 0.89 -0.4 709,332 + +1.1 709,333 - +1.1 709,390 + +1.0 709,390 + +0.5 709,390 + +1.5 709,390 + -0.1 709,391 - +0.3 709,391 - -0.4 709,391 - -1.2 709,391 - -0.9 709,391 - -0.3 709,628 - MPMX19_05205 0.27 -2.1 709,628 - MPMX19_05205 0.27 -0.9 709,628 - MPMX19_05205 0.27 -0.3 709,705 + MPMX19_05205 0.34 -0.7 709,705 + MPMX19_05205 0.34 -1.1 709,705 + MPMX19_05205 0.34 -0.5 709,706 - MPMX19_05205 0.34 -1.0 709,706 - MPMX19_05205 0.34 +1.5 709,706 - MPMX19_05205 0.34 +1.1 709,751 - MPMX19_05205 0.39 -1.9 709,800 + MPMX19_05205 0.43 -0.9 710,242 + MPMX19_05205 0.86 -0.1 710,254 + MPMX19_05205 0.87 -2.2 710,549 + -1.6 710,644 + -0.8 710,644 + -0.3 710,648 + +0.8 710,649 - +0.7 710,674 + +0.9 710,920 + -1.9 710,920 + -1.2 710,920 + -0.4 710,920 + -0.2 710,920 + +0.1 710,920 + -1.6 710,921 - +0.4 710,921 - +0.3 710,921 - -0.3 711,125 + MPMX19_05206 0.12 +0.1 711,125 + MPMX19_05206 0.12 -0.8 711,125 + MPMX19_05206 0.12 -1.1 711,125 + MPMX19_05206 0.12 -2.0 711,126 - MPMX19_05206 0.12 +0.7 711,126 - MPMX19_05206 0.12 +1.5 711,320 + MPMX19_05206 0.21 -0.3 711,320 + MPMX19_05206 0.21 -0.9 711,320 + MPMX19_05206 0.21 -0.6
Or see this region's nucleotide sequence