Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05029 and MPMX19_05030 are separated by 10 nucleotides MPMX19_05030 and MPMX19_05031 are separated by 90 nucleotides MPMX19_05031 and MPMX19_05032 overlap by 4 nucleotides
MPMX19_05029: MPMX19_05029 - Putative xanthine dehydrogenase molybdenum-binding subunit XdhA, at 515,012 to 517,402
_05029
MPMX19_05030: MPMX19_05030 - hypothetical protein, at 517,413 to 518,276
_05030
MPMX19_05031: MPMX19_05031 - ATP synthase gamma chain, at 518,367 to 519,209
_05031
MPMX19_05032: MPMX19_05032 - ATP synthase subunit alpha, at 519,206 to 520,735
_05032
Position (kb) 517
518
519 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 516.434 kb on + strand, within MPMX19_05029 at 516.434 kb on + strand, within MPMX19_05029 at 516.434 kb on + strand, within MPMX19_05029 at 516.434 kb on + strand, within MPMX19_05029 at 516.434 kb on + strand, within MPMX19_05029 at 516.434 kb on + strand, within MPMX19_05029 at 516.435 kb on - strand, within MPMX19_05029 at 516.464 kb on + strand, within MPMX19_05029 at 516.464 kb on + strand, within MPMX19_05029 at 516.464 kb on + strand, within MPMX19_05029 at 516.464 kb on + strand, within MPMX19_05029 at 516.464 kb on + strand, within MPMX19_05029 at 516.464 kb on + strand, within MPMX19_05029 at 516.465 kb on - strand, within MPMX19_05029 at 516.465 kb on - strand, within MPMX19_05029 at 516.465 kb on - strand, within MPMX19_05029 at 516.465 kb on - strand, within MPMX19_05029 at 516.465 kb on - strand, within MPMX19_05029 at 516.465 kb on - strand, within MPMX19_05029 at 516.521 kb on + strand, within MPMX19_05029 at 516.521 kb on + strand, within MPMX19_05029 at 516.521 kb on + strand, within MPMX19_05029 at 516.521 kb on + strand, within MPMX19_05029 at 516.521 kb on + strand, within MPMX19_05029 at 516.522 kb on - strand, within MPMX19_05029 at 516.522 kb on - strand, within MPMX19_05029 at 516.522 kb on - strand, within MPMX19_05029 at 516.655 kb on + strand, within MPMX19_05029 at 516.655 kb on + strand, within MPMX19_05029 at 516.655 kb on + strand, within MPMX19_05029 at 516.812 kb on + strand, within MPMX19_05029 at 516.812 kb on + strand, within MPMX19_05029 at 516.812 kb on + strand, within MPMX19_05029 at 516.812 kb on + strand, within MPMX19_05029 at 516.812 kb on + strand, within MPMX19_05029 at 516.812 kb on + strand, within MPMX19_05029 at 516.812 kb on + strand, within MPMX19_05029 at 516.813 kb on - strand, within MPMX19_05029 at 516.813 kb on - strand, within MPMX19_05029 at 516.813 kb on - strand, within MPMX19_05029 at 516.813 kb on - strand, within MPMX19_05029 at 516.813 kb on - strand, within MPMX19_05029 at 516.813 kb on - strand, within MPMX19_05029 at 516.813 kb on - strand, within MPMX19_05029 at 516.813 kb on - strand, within MPMX19_05029 at 516.813 kb on - strand, within MPMX19_05029 at 516.813 kb on - strand, within MPMX19_05029 at 516.813 kb on - strand, within MPMX19_05029 at 516.813 kb on - strand, within MPMX19_05029 at 516.813 kb on - strand, within MPMX19_05029 at 516.813 kb on - strand, within MPMX19_05029 at 516.813 kb on - strand, within MPMX19_05029 at 516.848 kb on + strand, within MPMX19_05029 at 516.848 kb on + strand, within MPMX19_05029 at 516.848 kb on + strand, within MPMX19_05029 at 516.848 kb on + strand, within MPMX19_05029 at 516.848 kb on + strand, within MPMX19_05029 at 516.848 kb on + strand, within MPMX19_05029 at 516.848 kb on + strand, within MPMX19_05029 at 516.848 kb on + strand, within MPMX19_05029 at 516.848 kb on + strand, within MPMX19_05029 at 516.848 kb on + strand, within MPMX19_05029 at 516.849 kb on - strand, within MPMX19_05029 at 516.849 kb on - strand, within MPMX19_05029 at 516.849 kb on - strand, within MPMX19_05029 at 516.902 kb on + strand, within MPMX19_05029 at 516.902 kb on + strand, within MPMX19_05029 at 516.902 kb on + strand, within MPMX19_05029 at 516.902 kb on + strand, within MPMX19_05029 at 516.902 kb on + strand, within MPMX19_05029 at 516.902 kb on + strand, within MPMX19_05029 at 516.902 kb on + strand, within MPMX19_05029 at 516.903 kb on - strand, within MPMX19_05029 at 516.903 kb on - strand, within MPMX19_05029 at 516.903 kb on - strand, within MPMX19_05029 at 516.903 kb on - strand, within MPMX19_05029 at 516.903 kb on - strand, within MPMX19_05029 at 516.903 kb on - strand, within MPMX19_05029 at 516.905 kb on + strand, within MPMX19_05029 at 516.905 kb on + strand, within MPMX19_05029 at 516.906 kb on - strand, within MPMX19_05029 at 516.906 kb on - strand, within MPMX19_05029 at 516.915 kb on - strand, within MPMX19_05029 at 516.962 kb on + strand, within MPMX19_05029 at 516.962 kb on + strand, within MPMX19_05029 at 516.962 kb on + strand, within MPMX19_05029 at 516.962 kb on + strand, within MPMX19_05029 at 516.962 kb on + strand, within MPMX19_05029 at 516.962 kb on + strand, within MPMX19_05029 at 516.962 kb on + strand, within MPMX19_05029 at 516.962 kb on + strand, within MPMX19_05029 at 516.962 kb on + strand, within MPMX19_05029 at 516.962 kb on + strand, within MPMX19_05029 at 516.962 kb on + strand, within MPMX19_05029 at 516.963 kb on - strand, within MPMX19_05029 at 516.963 kb on - strand, within MPMX19_05029 at 516.963 kb on - strand, within MPMX19_05029 at 516.963 kb on - strand, within MPMX19_05029 at 516.963 kb on - strand, within MPMX19_05029 at 516.963 kb on - strand, within MPMX19_05029 at 516.963 kb on - strand, within MPMX19_05029 at 516.963 kb on - strand, within MPMX19_05029 at 516.963 kb on - strand, within MPMX19_05029 at 516.963 kb on - strand, within MPMX19_05029 at 516.974 kb on - strand, within MPMX19_05029 at 517.130 kb on + strand, within MPMX19_05029 at 517.130 kb on + strand, within MPMX19_05029 at 517.130 kb on + strand, within MPMX19_05029 at 517.130 kb on + strand, within MPMX19_05029 at 517.130 kb on + strand, within MPMX19_05029 at 517.130 kb on + strand, within MPMX19_05029 at 517.131 kb on - strand, within MPMX19_05029 at 517.131 kb on - strand, within MPMX19_05029 at 517.131 kb on - strand, within MPMX19_05029 at 517.131 kb on - strand, within MPMX19_05029 at 517.131 kb on - strand, within MPMX19_05029 at 517.131 kb on - strand, within MPMX19_05029 at 517.131 kb on - strand, within MPMX19_05029 at 517.131 kb on - strand, within MPMX19_05029 at 517.131 kb on - strand, within MPMX19_05029 at 517.131 kb on - strand, within MPMX19_05029 at 517.131 kb on - strand, within MPMX19_05029 at 517.131 kb on - strand, within MPMX19_05029 at 517.901 kb on + strand, within MPMX19_05030 at 517.901 kb on + strand, within MPMX19_05030 at 517.902 kb on - strand, within MPMX19_05030 at 517.956 kb on + strand, within MPMX19_05030 at 517.956 kb on + strand, within MPMX19_05030 at 517.957 kb on - strand, within MPMX19_05030 at 517.957 kb on - strand, within MPMX19_05030 at 518.031 kb on + strand, within MPMX19_05030 at 518.031 kb on + strand, within MPMX19_05030 at 518.031 kb on + strand, within MPMX19_05030 at 518.031 kb on + strand, within MPMX19_05030 at 518.031 kb on + strand, within MPMX19_05030 at 518.031 kb on + strand, within MPMX19_05030 at 518.031 kb on + strand, within MPMX19_05030 at 518.031 kb on + strand, within MPMX19_05030 at 518.031 kb on + strand, within MPMX19_05030 at 518.032 kb on - strand, within MPMX19_05030 at 518.032 kb on - strand, within MPMX19_05030 at 518.032 kb on - strand, within MPMX19_05030 at 518.032 kb on - strand, within MPMX19_05030 at 518.032 kb on - strand, within MPMX19_05030 at 518.285 kb on + strand at 518.285 kb on + strand at 518.285 kb on + strand at 518.285 kb on + strand at 518.566 kb on + strand, within MPMX19_05031 at 518.566 kb on + strand, within MPMX19_05031 at 518.566 kb on + strand, within MPMX19_05031 at 518.566 kb on + strand, within MPMX19_05031 at 518.566 kb on + strand, within MPMX19_05031 at 518.566 kb on + strand, within MPMX19_05031 at 518.566 kb on + strand, within MPMX19_05031 at 518.566 kb on + strand, within MPMX19_05031 at 518.566 kb on + strand, within MPMX19_05031 at 518.566 kb on + strand, within MPMX19_05031 at 518.567 kb on - strand, within MPMX19_05031 at 518.567 kb on - strand, within MPMX19_05031 at 518.567 kb on - strand, within MPMX19_05031 at 518.567 kb on - strand, within MPMX19_05031 at 518.567 kb on - strand, within MPMX19_05031 at 518.567 kb on - strand, within MPMX19_05031 at 518.567 kb on - strand, within MPMX19_05031 at 518.567 kb on - strand, within MPMX19_05031 at 518.567 kb on - strand, within MPMX19_05031 at 518.567 kb on - strand, within MPMX19_05031 at 518.567 kb on - strand, within MPMX19_05031 at 518.567 kb on - strand, within MPMX19_05031 at 518.647 kb on - strand, within MPMX19_05031 at 518.710 kb on + strand, within MPMX19_05031 at 518.710 kb on + strand, within MPMX19_05031 at 518.711 kb on - strand, within MPMX19_05031 at 518.711 kb on - strand, within MPMX19_05031 at 519.073 kb on + strand, within MPMX19_05031 at 519.073 kb on + strand, within MPMX19_05031 at 519.073 kb on + strand, within MPMX19_05031 at 519.073 kb on + strand, within MPMX19_05031 at 519.074 kb on - strand, within MPMX19_05031
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 516,434 + MPMX19_05029 0.59 -1.1 516,434 + MPMX19_05029 0.59 -1.0 516,434 + MPMX19_05029 0.59 +0.6 516,434 + MPMX19_05029 0.59 -0.4 516,434 + MPMX19_05029 0.59 -1.7 516,434 + MPMX19_05029 0.59 +0.5 516,435 - MPMX19_05029 0.60 -0.6 516,464 + MPMX19_05029 0.61 -0.0 516,464 + MPMX19_05029 0.61 +0.5 516,464 + MPMX19_05029 0.61 +1.0 516,464 + MPMX19_05029 0.61 -0.1 516,464 + MPMX19_05029 0.61 -0.6 516,464 + MPMX19_05029 0.61 -0.7 516,465 - MPMX19_05029 0.61 +0.0 516,465 - MPMX19_05029 0.61 -0.2 516,465 - MPMX19_05029 0.61 +0.8 516,465 - MPMX19_05029 0.61 -1.3 516,465 - MPMX19_05029 0.61 +0.3 516,465 - MPMX19_05029 0.61 -1.3 516,521 + MPMX19_05029 0.63 +0.5 516,521 + MPMX19_05029 0.63 -0.8 516,521 + MPMX19_05029 0.63 -1.3 516,521 + MPMX19_05029 0.63 +0.1 516,521 + MPMX19_05029 0.63 -0.6 516,522 - MPMX19_05029 0.63 +0.2 516,522 - MPMX19_05029 0.63 -0.8 516,522 - MPMX19_05029 0.63 -1.5 516,655 + MPMX19_05029 0.69 +0.2 516,655 + MPMX19_05029 0.69 -1.3 516,655 + MPMX19_05029 0.69 +0.2 516,812 + MPMX19_05029 0.75 -1.3 516,812 + MPMX19_05029 0.75 -0.8 516,812 + MPMX19_05029 0.75 -0.3 516,812 + MPMX19_05029 0.75 -0.3 516,812 + MPMX19_05029 0.75 -0.2 516,812 + MPMX19_05029 0.75 -0.6 516,812 + MPMX19_05029 0.75 +0.7 516,813 - MPMX19_05029 0.75 +0.9 516,813 - MPMX19_05029 0.75 -0.8 516,813 - MPMX19_05029 0.75 +0.1 516,813 - MPMX19_05029 0.75 -1.1 516,813 - MPMX19_05029 0.75 +0.1 516,813 - MPMX19_05029 0.75 +2.1 516,813 - MPMX19_05029 0.75 +1.1 516,813 - MPMX19_05029 0.75 -1.3 516,813 - MPMX19_05029 0.75 -1.5 516,813 - MPMX19_05029 0.75 -0.0 516,813 - MPMX19_05029 0.75 -1.0 516,813 - MPMX19_05029 0.75 -1.3 516,813 - MPMX19_05029 0.75 -0.5 516,813 - MPMX19_05029 0.75 -1.9 516,813 - MPMX19_05029 0.75 -3.2 516,848 + MPMX19_05029 0.77 -0.5 516,848 + MPMX19_05029 0.77 +2.1 516,848 + MPMX19_05029 0.77 -0.0 516,848 + MPMX19_05029 0.77 -0.5 516,848 + MPMX19_05029 0.77 +0.7 516,848 + MPMX19_05029 0.77 -0.5 516,848 + MPMX19_05029 0.77 +0.2 516,848 + MPMX19_05029 0.77 -0.8 516,848 + MPMX19_05029 0.77 -0.2 516,848 + MPMX19_05029 0.77 -1.3 516,849 - MPMX19_05029 0.77 -1.7 516,849 - MPMX19_05029 0.77 +0.8 516,849 - MPMX19_05029 0.77 +0.1 516,902 + MPMX19_05029 0.79 -1.2 516,902 + MPMX19_05029 0.79 -1.3 516,902 + MPMX19_05029 0.79 +0.2 516,902 + MPMX19_05029 0.79 +0.3 516,902 + MPMX19_05029 0.79 +0.7 516,902 + MPMX19_05029 0.79 +0.7 516,902 + MPMX19_05029 0.79 -0.0 516,903 - MPMX19_05029 0.79 -0.1 516,903 - MPMX19_05029 0.79 -0.2 516,903 - MPMX19_05029 0.79 -0.6 516,903 - MPMX19_05029 0.79 -0.8 516,903 - MPMX19_05029 0.79 -0.5 516,903 - MPMX19_05029 0.79 -0.1 516,905 + MPMX19_05029 0.79 -1.0 516,905 + MPMX19_05029 0.79 -0.0 516,906 - MPMX19_05029 0.79 +0.9 516,906 - MPMX19_05029 0.79 -0.2 516,915 - MPMX19_05029 0.80 -0.2 516,962 + MPMX19_05029 0.82 -0.2 516,962 + MPMX19_05029 0.82 -0.0 516,962 + MPMX19_05029 0.82 -0.0 516,962 + MPMX19_05029 0.82 -0.2 516,962 + MPMX19_05029 0.82 +1.2 516,962 + MPMX19_05029 0.82 -1.5 516,962 + MPMX19_05029 0.82 -0.0 516,962 + MPMX19_05029 0.82 +1.1 516,962 + MPMX19_05029 0.82 +0.2 516,962 + MPMX19_05029 0.82 -0.3 516,962 + MPMX19_05029 0.82 +0.2 516,963 - MPMX19_05029 0.82 +2.0 516,963 - MPMX19_05029 0.82 -0.1 516,963 - MPMX19_05029 0.82 +0.2 516,963 - MPMX19_05029 0.82 -0.7 516,963 - MPMX19_05029 0.82 -1.0 516,963 - MPMX19_05029 0.82 -0.1 516,963 - MPMX19_05029 0.82 -0.0 516,963 - MPMX19_05029 0.82 -1.6 516,963 - MPMX19_05029 0.82 -0.0 516,963 - MPMX19_05029 0.82 -1.8 516,974 - MPMX19_05029 0.82 -1.8 517,130 + MPMX19_05029 0.89 +0.5 517,130 + MPMX19_05029 0.89 -1.5 517,130 + MPMX19_05029 0.89 +0.4 517,130 + MPMX19_05029 0.89 +0.5 517,130 + MPMX19_05029 0.89 +0.5 517,130 + MPMX19_05029 0.89 -0.0 517,131 - MPMX19_05029 0.89 -1.5 517,131 - MPMX19_05029 0.89 -0.3 517,131 - MPMX19_05029 0.89 -2.2 517,131 - MPMX19_05029 0.89 -1.6 517,131 - MPMX19_05029 0.89 -0.2 517,131 - MPMX19_05029 0.89 +0.2 517,131 - MPMX19_05029 0.89 +0.1 517,131 - MPMX19_05029 0.89 -0.0 517,131 - MPMX19_05029 0.89 +0.5 517,131 - MPMX19_05029 0.89 +0.3 517,131 - MPMX19_05029 0.89 -0.0 517,131 - MPMX19_05029 0.89 -0.0 517,901 + MPMX19_05030 0.56 +0.4 517,901 + MPMX19_05030 0.56 -0.6 517,902 - MPMX19_05030 0.57 +0.6 517,956 + MPMX19_05030 0.63 -1.1 517,956 + MPMX19_05030 0.63 +0.1 517,957 - MPMX19_05030 0.63 -0.5 517,957 - MPMX19_05030 0.63 -0.2 518,031 + MPMX19_05030 0.72 -1.3 518,031 + MPMX19_05030 0.72 -0.9 518,031 + MPMX19_05030 0.72 -1.8 518,031 + MPMX19_05030 0.72 -1.4 518,031 + MPMX19_05030 0.72 -0.6 518,031 + MPMX19_05030 0.72 -1.3 518,031 + MPMX19_05030 0.72 +0.2 518,031 + MPMX19_05030 0.72 -1.4 518,031 + MPMX19_05030 0.72 +0.2 518,032 - MPMX19_05030 0.72 -0.3 518,032 - MPMX19_05030 0.72 -0.8 518,032 - MPMX19_05030 0.72 -3.2 518,032 - MPMX19_05030 0.72 -1.8 518,032 - MPMX19_05030 0.72 -0.5 518,285 + -0.1 518,285 + -1.6 518,285 + +0.4 518,285 + -0.1 518,566 + MPMX19_05031 0.24 -0.5 518,566 + MPMX19_05031 0.24 -0.6 518,566 + MPMX19_05031 0.24 +0.5 518,566 + MPMX19_05031 0.24 +1.9 518,566 + MPMX19_05031 0.24 -1.0 518,566 + MPMX19_05031 0.24 -0.5 518,566 + MPMX19_05031 0.24 -2.5 518,566 + MPMX19_05031 0.24 +0.7 518,566 + MPMX19_05031 0.24 -1.8 518,566 + MPMX19_05031 0.24 +0.5 518,567 - MPMX19_05031 0.24 -0.8 518,567 - MPMX19_05031 0.24 +0.1 518,567 - MPMX19_05031 0.24 -0.6 518,567 - MPMX19_05031 0.24 -1.0 518,567 - MPMX19_05031 0.24 +0.9 518,567 - MPMX19_05031 0.24 -0.6 518,567 - MPMX19_05031 0.24 -0.8 518,567 - MPMX19_05031 0.24 +0.1 518,567 - MPMX19_05031 0.24 +0.5 518,567 - MPMX19_05031 0.24 -1.5 518,567 - MPMX19_05031 0.24 -0.2 518,567 - MPMX19_05031 0.24 -0.3 518,647 - MPMX19_05031 0.33 -0.2 518,710 + MPMX19_05031 0.41 -0.5 518,710 + MPMX19_05031 0.41 -0.2 518,711 - MPMX19_05031 0.41 -1.6 518,711 - MPMX19_05031 0.41 -0.0 519,073 + MPMX19_05031 0.84 -1.5 519,073 + MPMX19_05031 0.84 -0.9 519,073 + MPMX19_05031 0.84 +0.2 519,073 + MPMX19_05031 0.84 -0.7 519,074 - MPMX19_05031 0.84 -0.3
Or see this region's nucleotide sequence