Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04980 and MPMX19_04981 are separated by 10 nucleotides MPMX19_04981 and MPMX19_04982 are separated by 13 nucleotides MPMX19_04982 and MPMX19_04983 are separated by 7 nucleotides
MPMX19_04980: MPMX19_04980 - hypothetical protein, at 452,613 to 454,451
_04980
MPMX19_04981: MPMX19_04981 - hypothetical protein, at 454,462 to 455,157
_04981
MPMX19_04982: MPMX19_04982 - hypothetical protein, at 455,171 to 456,856
_04982
MPMX19_04983: MPMX19_04983 - hypothetical protein, at 456,864 to 460,361
_04983
Position (kb) 455
456
457 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 454.242 kb on + strand, within MPMX19_04980 at 454.242 kb on + strand, within MPMX19_04980 at 454.242 kb on + strand, within MPMX19_04980 at 454.242 kb on + strand, within MPMX19_04980 at 454.242 kb on + strand, within MPMX19_04980 at 454.243 kb on - strand, within MPMX19_04980 at 454.243 kb on - strand, within MPMX19_04980 at 454.243 kb on - strand, within MPMX19_04980 at 454.329 kb on + strand at 454.329 kb on + strand at 454.330 kb on - strand at 454.330 kb on - strand at 454.330 kb on - strand at 454.330 kb on - strand at 454.330 kb on - strand at 454.330 kb on - strand at 454.345 kb on - strand at 454.345 kb on - strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.356 kb on + strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.357 kb on - strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.437 kb on + strand at 454.438 kb on - strand at 454.438 kb on - strand at 454.438 kb on - strand at 454.438 kb on - strand at 454.438 kb on - strand at 454.438 kb on - strand at 454.438 kb on - strand at 454.449 kb on + strand at 454.449 kb on + strand at 454.450 kb on - strand at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.699 kb on + strand, within MPMX19_04981 at 454.700 kb on - strand, within MPMX19_04981 at 454.700 kb on - strand, within MPMX19_04981 at 454.700 kb on - strand, within MPMX19_04981 at 454.700 kb on - strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.708 kb on + strand, within MPMX19_04981 at 454.709 kb on - strand, within MPMX19_04981 at 454.709 kb on - strand, within MPMX19_04981 at 454.709 kb on - strand, within MPMX19_04981 at 454.709 kb on - strand, within MPMX19_04981 at 454.709 kb on - strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.837 kb on + strand, within MPMX19_04981 at 454.838 kb on - strand, within MPMX19_04981 at 454.838 kb on - strand, within MPMX19_04981 at 454.838 kb on - strand, within MPMX19_04981 at 454.838 kb on - strand, within MPMX19_04981 at 454.838 kb on - strand, within MPMX19_04981 at 454.838 kb on - strand, within MPMX19_04981 at 454.934 kb on - strand, within MPMX19_04981 at 454.939 kb on + strand, within MPMX19_04981 at 454.939 kb on + strand, within MPMX19_04981 at 454.939 kb on + strand, within MPMX19_04981 at 454.939 kb on + strand, within MPMX19_04981 at 454.939 kb on + strand, within MPMX19_04981 at 454.939 kb on + strand, within MPMX19_04981 at 454.940 kb on - strand, within MPMX19_04981 at 454.940 kb on - strand, within MPMX19_04981 at 454.940 kb on - strand, within MPMX19_04981 at 455.155 kb on + strand at 455.155 kb on + strand at 455.155 kb on + strand at 455.155 kb on + strand at 455.155 kb on + strand at 455.155 kb on + strand at 455.156 kb on - strand at 455.182 kb on - strand at 455.249 kb on + strand at 455.249 kb on + strand at 455.249 kb on + strand at 455.249 kb on + strand at 455.250 kb on - strand at 455.250 kb on - strand at 455.469 kb on + strand, within MPMX19_04982 at 455.469 kb on + strand, within MPMX19_04982 at 455.469 kb on + strand, within MPMX19_04982 at 455.469 kb on + strand, within MPMX19_04982 at 455.469 kb on + strand, within MPMX19_04982 at 455.594 kb on + strand, within MPMX19_04982 at 455.594 kb on + strand, within MPMX19_04982 at 455.595 kb on - strand, within MPMX19_04982 at 455.595 kb on - strand, within MPMX19_04982 at 455.621 kb on + strand, within MPMX19_04982 at 455.621 kb on + strand, within MPMX19_04982 at 455.621 kb on + strand, within MPMX19_04982 at 455.621 kb on + strand, within MPMX19_04982 at 455.621 kb on - strand, within MPMX19_04982 at 455.622 kb on - strand, within MPMX19_04982 at 455.622 kb on - strand, within MPMX19_04982 at 455.622 kb on - strand, within MPMX19_04982 at 455.657 kb on + strand, within MPMX19_04982 at 455.658 kb on - strand, within MPMX19_04982 at 455.658 kb on - strand, within MPMX19_04982 at 455.658 kb on - strand, within MPMX19_04982 at 455.702 kb on + strand, within MPMX19_04982 at 455.702 kb on + strand, within MPMX19_04982 at 455.703 kb on - strand, within MPMX19_04982 at 455.987 kb on + strand, within MPMX19_04982 at 455.987 kb on + strand, within MPMX19_04982 at 455.987 kb on + strand, within MPMX19_04982 at 455.988 kb on - strand, within MPMX19_04982 at 455.988 kb on - strand, within MPMX19_04982 at 455.988 kb on - strand, within MPMX19_04982 at 455.997 kb on - strand, within MPMX19_04982 at 456.029 kb on + strand, within MPMX19_04982 at 456.029 kb on + strand, within MPMX19_04982 at 456.030 kb on - strand, within MPMX19_04982 at 456.030 kb on - strand, within MPMX19_04982 at 456.314 kb on - strand, within MPMX19_04982 at 456.314 kb on - strand, within MPMX19_04982 at 456.449 kb on + strand, within MPMX19_04982 at 456.449 kb on + strand, within MPMX19_04982 at 456.449 kb on + strand, within MPMX19_04982 at 456.449 kb on + strand, within MPMX19_04982 at 456.449 kb on + strand, within MPMX19_04982 at 456.449 kb on + strand, within MPMX19_04982 at 456.449 kb on + strand, within MPMX19_04982 at 456.449 kb on + strand, within MPMX19_04982 at 456.449 kb on + strand, within MPMX19_04982 at 456.449 kb on + strand, within MPMX19_04982 at 456.449 kb on + strand, within MPMX19_04982 at 456.449 kb on + strand, within MPMX19_04982 at 456.450 kb on - strand, within MPMX19_04982 at 456.450 kb on - strand, within MPMX19_04982 at 456.450 kb on - strand, within MPMX19_04982 at 456.450 kb on - strand, within MPMX19_04982 at 456.450 kb on - strand, within MPMX19_04982 at 456.450 kb on - strand, within MPMX19_04982 at 456.452 kb on + strand, within MPMX19_04982 at 456.452 kb on + strand, within MPMX19_04982 at 456.452 kb on + strand, within MPMX19_04982 at 456.452 kb on + strand, within MPMX19_04982 at 456.453 kb on - strand, within MPMX19_04982 at 456.453 kb on - strand, within MPMX19_04982 at 456.453 kb on - strand, within MPMX19_04982 at 456.453 kb on - strand, within MPMX19_04982 at 456.453 kb on - strand, within MPMX19_04982 at 456.453 kb on - strand, within MPMX19_04982 at 456.453 kb on - strand, within MPMX19_04982 at 456.677 kb on + strand, within MPMX19_04982 at 456.698 kb on + strand at 456.698 kb on + strand at 456.699 kb on - strand at 456.699 kb on - strand at 456.699 kb on - strand at 456.699 kb on - strand at 456.699 kb on - strand at 456.700 kb on + strand at 456.759 kb on - strand at 456.759 kb on - strand at 456.759 kb on - strand at 457.054 kb on + strand at 457.055 kb on - strand at 457.055 kb on - strand at 457.096 kb on + strand at 457.097 kb on - strand at 457.202 kb on - strand at 457.202 kb on - strand at 457.324 kb on + strand, within MPMX19_04983 at 457.324 kb on + strand, within MPMX19_04983 at 457.324 kb on + strand, within MPMX19_04983 at 457.324 kb on + strand, within MPMX19_04983 at 457.324 kb on + strand, within MPMX19_04983 at 457.325 kb on - strand, within MPMX19_04983 at 457.325 kb on - strand, within MPMX19_04983 at 457.325 kb on - strand, within MPMX19_04983 at 457.325 kb on - strand, within MPMX19_04983 at 457.325 kb on - strand, within MPMX19_04983 at 457.325 kb on - strand, within MPMX19_04983 at 457.325 kb on - strand, within MPMX19_04983 at 457.336 kb on + strand, within MPMX19_04983 at 457.336 kb on + strand, within MPMX19_04983 at 457.336 kb on + strand, within MPMX19_04983 at 457.336 kb on + strand, within MPMX19_04983 at 457.337 kb on - strand, within MPMX19_04983 at 457.337 kb on - strand, within MPMX19_04983 at 457.337 kb on - strand, within MPMX19_04983 at 457.337 kb on - strand, within MPMX19_04983 at 457.337 kb on - strand, within MPMX19_04983 at 457.337 kb on - strand, within MPMX19_04983 at 457.337 kb on - strand, within MPMX19_04983 at 457.337 kb on - strand, within MPMX19_04983 at 457.453 kb on + strand, within MPMX19_04983 at 457.453 kb on + strand, within MPMX19_04983 at 457.454 kb on - strand, within MPMX19_04983 at 457.468 kb on + strand, within MPMX19_04983 at 457.468 kb on + strand, within MPMX19_04983 at 457.468 kb on + strand, within MPMX19_04983 at 457.469 kb on - strand, within MPMX19_04983
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 454,242 + MPMX19_04980 0.89 -0.3 454,242 + MPMX19_04980 0.89 -0.0 454,242 + MPMX19_04980 0.89 -1.3 454,242 + MPMX19_04980 0.89 -0.9 454,242 + MPMX19_04980 0.89 -0.7 454,243 - MPMX19_04980 0.89 +0.9 454,243 - MPMX19_04980 0.89 -0.5 454,243 - MPMX19_04980 0.89 +0.1 454,329 + +0.0 454,329 + +0.7 454,330 - -1.3 454,330 - -1.4 454,330 - -0.6 454,330 - +0.4 454,330 - +1.6 454,330 - +0.6 454,345 - +0.5 454,345 - +0.2 454,356 + -0.6 454,356 + +1.1 454,356 + +0.1 454,356 + -0.4 454,356 + +1.2 454,356 + -0.3 454,356 + -0.3 454,356 + -0.3 454,356 + -0.6 454,356 + -0.6 454,356 + -0.4 454,356 + -0.3 454,356 + -0.1 454,356 + +1.6 454,356 + -0.8 454,356 + -0.8 454,356 + -0.3 454,357 - +1.0 454,357 - -0.4 454,357 - -0.0 454,357 - -1.4 454,357 - +0.6 454,357 - -1.5 454,357 - -0.6 454,357 - -1.6 454,357 - +0.2 454,357 - -2.1 454,357 - +0.2 454,357 - -0.9 454,357 - +0.2 454,357 - +0.3 454,437 + -0.3 454,437 + -0.3 454,437 + +0.6 454,437 + -1.3 454,437 + -0.4 454,437 + -0.4 454,437 + -0.2 454,437 + +0.1 454,437 + -0.6 454,437 + -0.6 454,437 + -2.1 454,437 + +0.8 454,437 + -0.4 454,437 + -1.0 454,438 - +0.9 454,438 - -0.6 454,438 - -2.4 454,438 - -1.6 454,438 - -0.1 454,438 - -0.5 454,438 - -0.8 454,449 + -1.3 454,449 + -0.4 454,450 - -1.4 454,699 + MPMX19_04981 0.34 +0.2 454,699 + MPMX19_04981 0.34 -1.1 454,699 + MPMX19_04981 0.34 +1.6 454,699 + MPMX19_04981 0.34 +0.6 454,699 + MPMX19_04981 0.34 +1.3 454,699 + MPMX19_04981 0.34 -1.9 454,699 + MPMX19_04981 0.34 -0.8 454,699 + MPMX19_04981 0.34 -1.3 454,699 + MPMX19_04981 0.34 -1.7 454,699 + MPMX19_04981 0.34 -1.0 454,700 - MPMX19_04981 0.34 -0.3 454,700 - MPMX19_04981 0.34 +0.2 454,700 - MPMX19_04981 0.34 -0.6 454,700 - MPMX19_04981 0.34 -2.8 454,708 + MPMX19_04981 0.35 -1.0 454,708 + MPMX19_04981 0.35 +1.0 454,708 + MPMX19_04981 0.35 -2.8 454,708 + MPMX19_04981 0.35 +1.0 454,708 + MPMX19_04981 0.35 +0.4 454,708 + MPMX19_04981 0.35 -2.1 454,708 + MPMX19_04981 0.35 -0.4 454,709 - MPMX19_04981 0.35 +0.1 454,709 - MPMX19_04981 0.35 -0.3 454,709 - MPMX19_04981 0.35 -0.4 454,709 - MPMX19_04981 0.35 +0.3 454,709 - MPMX19_04981 0.35 +0.7 454,837 + MPMX19_04981 0.54 -1.0 454,837 + MPMX19_04981 0.54 -1.3 454,837 + MPMX19_04981 0.54 -2.3 454,837 + MPMX19_04981 0.54 -0.8 454,837 + MPMX19_04981 0.54 -0.4 454,837 + MPMX19_04981 0.54 -0.6 454,837 + MPMX19_04981 0.54 -1.0 454,837 + MPMX19_04981 0.54 -0.1 454,837 + MPMX19_04981 0.54 +0.3 454,837 + MPMX19_04981 0.54 -1.1 454,837 + MPMX19_04981 0.54 -0.2 454,838 - MPMX19_04981 0.54 -1.1 454,838 - MPMX19_04981 0.54 -2.0 454,838 - MPMX19_04981 0.54 -2.3 454,838 - MPMX19_04981 0.54 +1.6 454,838 - MPMX19_04981 0.54 -0.2 454,838 - MPMX19_04981 0.54 -0.5 454,934 - MPMX19_04981 0.68 -0.8 454,939 + MPMX19_04981 0.69 +0.1 454,939 + MPMX19_04981 0.69 -0.0 454,939 + MPMX19_04981 0.69 -1.4 454,939 + MPMX19_04981 0.69 -0.4 454,939 + MPMX19_04981 0.69 -0.4 454,939 + MPMX19_04981 0.69 +0.1 454,940 - MPMX19_04981 0.69 -0.4 454,940 - MPMX19_04981 0.69 +0.3 454,940 - MPMX19_04981 0.69 +0.0 455,155 + -2.3 455,155 + -0.4 455,155 + -1.0 455,155 + -1.0 455,155 + -2.4 455,155 + -1.4 455,156 - +1.6 455,182 - -0.3 455,249 + +1.4 455,249 + -0.1 455,249 + -0.9 455,249 + +0.6 455,250 - +0.4 455,250 - -0.0 455,469 + MPMX19_04982 0.18 +0.3 455,469 + MPMX19_04982 0.18 -0.3 455,469 + MPMX19_04982 0.18 +0.1 455,469 + MPMX19_04982 0.18 -0.1 455,469 + MPMX19_04982 0.18 -0.2 455,594 + MPMX19_04982 0.25 -0.3 455,594 + MPMX19_04982 0.25 -1.9 455,595 - MPMX19_04982 0.25 -2.6 455,595 - MPMX19_04982 0.25 -0.9 455,621 + MPMX19_04982 0.27 +1.3 455,621 + MPMX19_04982 0.27 -1.3 455,621 + MPMX19_04982 0.27 -1.0 455,621 + MPMX19_04982 0.27 +0.1 455,621 - MPMX19_04982 0.27 -1.3 455,622 - MPMX19_04982 0.27 -1.0 455,622 - MPMX19_04982 0.27 -0.8 455,622 - MPMX19_04982 0.27 -0.0 455,657 + MPMX19_04982 0.29 -0.2 455,658 - MPMX19_04982 0.29 +0.6 455,658 - MPMX19_04982 0.29 -0.2 455,658 - MPMX19_04982 0.29 -0.5 455,702 + MPMX19_04982 0.31 -0.6 455,702 + MPMX19_04982 0.31 -0.1 455,703 - MPMX19_04982 0.32 -0.0 455,987 + MPMX19_04982 0.48 -0.0 455,987 + MPMX19_04982 0.48 +1.0 455,987 + MPMX19_04982 0.48 -0.4 455,988 - MPMX19_04982 0.48 +1.0 455,988 - MPMX19_04982 0.48 +0.4 455,988 - MPMX19_04982 0.48 -1.9 455,997 - MPMX19_04982 0.49 -1.2 456,029 + MPMX19_04982 0.51 -1.9 456,029 + MPMX19_04982 0.51 -2.1 456,030 - MPMX19_04982 0.51 +0.2 456,030 - MPMX19_04982 0.51 -0.8 456,314 - MPMX19_04982 0.68 -0.9 456,314 - MPMX19_04982 0.68 -0.4 456,449 + MPMX19_04982 0.76 -0.3 456,449 + MPMX19_04982 0.76 -0.8 456,449 + MPMX19_04982 0.76 -1.4 456,449 + MPMX19_04982 0.76 -1.6 456,449 + MPMX19_04982 0.76 +0.4 456,449 + MPMX19_04982 0.76 +0.7 456,449 + MPMX19_04982 0.76 -2.0 456,449 + MPMX19_04982 0.76 -0.5 456,449 + MPMX19_04982 0.76 -1.4 456,449 + MPMX19_04982 0.76 -1.0 456,449 + MPMX19_04982 0.76 -0.8 456,449 + MPMX19_04982 0.76 +1.1 456,450 - MPMX19_04982 0.76 -0.6 456,450 - MPMX19_04982 0.76 -0.2 456,450 - MPMX19_04982 0.76 -0.4 456,450 - MPMX19_04982 0.76 -2.4 456,450 - MPMX19_04982 0.76 -0.3 456,450 - MPMX19_04982 0.76 -0.2 456,452 + MPMX19_04982 0.76 -1.0 456,452 + MPMX19_04982 0.76 +1.0 456,452 + MPMX19_04982 0.76 -1.5 456,452 + MPMX19_04982 0.76 -1.6 456,453 - MPMX19_04982 0.76 +0.4 456,453 - MPMX19_04982 0.76 -1.4 456,453 - MPMX19_04982 0.76 -1.1 456,453 - MPMX19_04982 0.76 -0.0 456,453 - MPMX19_04982 0.76 +0.2 456,453 - MPMX19_04982 0.76 -0.8 456,453 - MPMX19_04982 0.76 +0.2 456,677 + MPMX19_04982 0.89 -0.9 456,698 + -0.4 456,698 + +0.1 456,699 - -0.6 456,699 - -0.9 456,699 - +0.1 456,699 - -0.6 456,699 - +0.5 456,700 + -0.4 456,759 - +0.0 456,759 - -1.2 456,759 - -1.4 457,054 + -2.1 457,055 - -1.3 457,055 - -0.5 457,096 + +0.6 457,097 - -0.3 457,202 - -0.3 457,202 - -1.3 457,324 + MPMX19_04983 0.13 -0.3 457,324 + MPMX19_04983 0.13 -0.3 457,324 + MPMX19_04983 0.13 -1.3 457,324 + MPMX19_04983 0.13 +1.2 457,324 + MPMX19_04983 0.13 +1.6 457,325 - MPMX19_04983 0.13 +0.1 457,325 - MPMX19_04983 0.13 -0.0 457,325 - MPMX19_04983 0.13 -0.8 457,325 - MPMX19_04983 0.13 +0.6 457,325 - MPMX19_04983 0.13 -1.5 457,325 - MPMX19_04983 0.13 -1.9 457,325 - MPMX19_04983 0.13 +0.4 457,336 + MPMX19_04983 0.13 -1.1 457,336 + MPMX19_04983 0.13 +1.0 457,336 + MPMX19_04983 0.13 +1.1 457,336 + MPMX19_04983 0.13 -0.0 457,337 - MPMX19_04983 0.14 -0.6 457,337 - MPMX19_04983 0.14 -1.0 457,337 - MPMX19_04983 0.14 -0.8 457,337 - MPMX19_04983 0.14 +0.2 457,337 - MPMX19_04983 0.14 -0.8 457,337 - MPMX19_04983 0.14 +0.7 457,337 - MPMX19_04983 0.14 +0.8 457,337 - MPMX19_04983 0.14 -0.4 457,453 + MPMX19_04983 0.17 +0.6 457,453 + MPMX19_04983 0.17 -1.1 457,454 - MPMX19_04983 0.17 -1.0 457,468 + MPMX19_04983 0.17 -0.3 457,468 + MPMX19_04983 0.17 -0.4 457,468 + MPMX19_04983 0.17 -0.0 457,469 - MPMX19_04983 0.17 -1.9
Or see this region's nucleotide sequence